Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g18640 Fragaria vesca HOM05D004853 ORTHO05D005865 0.0e+00 1124.0 600 100.0
FAN15G3437 Fragaria x ananassa HOM05D004853 ORTHO05D005865 0.0e+00 1121.7 600 99.7
FAN27G1226 Fragaria x ananassa HOM05D004853 ORTHO05D005865 0.0e+00 1117.4 600 99.2
FAN24G1506 Fragaria x ananassa HOM05D004853 ORTHO05D005865 0.0e+00 1114.4 600 99.0
RcHm_v2.0_Chr6g0284201 Rosa chinensis HOM05D004853 ORTHO05D005865 0.0e+00 1094.0 600 96.3
MD10G1160500 Malus domestica HOM05D004853 ORTHO05D005865 2.8e-279 964.9 597 83.6
MD05G1172300 Malus domestica HOM05D004853 ORTHO05D005865 1.1e-278 963.0 597 83.2
Prupe.8G199700 Prunus persica HOM05D004853 ORTHO05D005865 3.5e-277 958.0 599 83.1
Cfa004377 Carpinus fangiana HOM05D004853 ORTHO05D005865 1.9e-275 952.2 600 83.0
QL09p052469 Quercus lobata HOM05D004853 ORTHO05D005865 4.7e-274 947.6 599 81.1
QL09p051756 Quercus lobata HOM05D004853 ORTHO05D005865 2.3e-273 945.3 599 81.1
TAR623G1093 Trochodendron aralioides HOM05D004853 ORTHO05D005865 5.7e-272 940.6 602 79.4
Haze_15035 Corylus avellana HOM05D004853 ORTHO05D005865 9.8e-272 939.9 592 82.9
TWI36G0697 Tripterygium wilfordii HOM05D004853 ORTHO05D005865 2.2e-271 938.7 600 82.0
Eucgr.H00778 Eucalyptus grandis HOM05D004853 ORTHO05D005865 2.0e-269 932.2 602 81.9
TAR376G0972 Trochodendron aralioides HOM05D004853 ORTHO05D005865 4.5e-269 931.0 602 79.2
CANSAT01G2121 Cannabis sativa HOM05D004853 ORTHO05D005865 2.3e-268 928.7 602 81.7
ClCG09G008800 Citrullus lanatus HOM05D004853 ORTHO05D005865 8.6e-268 926.8 602 79.4
CsaV3_7G026150 Cucumis sativus L. HOM05D004853 ORTHO05D005865 1.1e-267 926.4 602 80.6
MELO3C021058.2 Cucumis melo HOM05D004853 ORTHO05D005865 1.5e-267 926.0 602 80.4
Sed0013559 Sechium edule HOM05D004853 ORTHO05D005865 2.5e-267 925.2 602 79.9
Manes.13G048900 Manihot esculenta HOM05D004853 ORTHO05D005865 5.5e-267 924.1 600 81.2
Potri.015G090600 Populus trichocarpa HOM05D004853 ORTHO05D005865 5.5e-267 924.1 602 81.1
Ciclev10019411m.g Citrus clementina HOM05D004853 ORTHO05D005865 9.5e-267 923.3 602 80.2
Nn7g37081 Nelumbo nucifera HOM05D004853 ORTHO05D005865 2.1e-266 922.2 603 79.3
CiPaw.01G049500 Carya illinoinensis HOM05D004853 ORTHO05D005865 4.0e-265 917.9 602 80.6
CiPaw.02G023000 Carya illinoinensis HOM05D004853 ORTHO05D005865 6.8e-265 917.1 602 77.6
Sabra15G0112700 Salix brachista HOM05D004853 ORTHO05D005865 4.1e-262 907.9 602 79.9
CSS0034871 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 2.9e-260 901.7 603 77.4
Duzib133G1132 Durio zibethinus HOM05D004853 ORTHO05D005865 3.8e-260 901.4 603 78.8
PSO384G4190 Papaver somniferum HOM05D004853 ORTHO05D005865 5.0e-260 901.0 602 79.7
Dinv12655 Davidia involucrata HOM05D004853 ORTHO05D005865 1.5e-259 899.4 602 78.1
MBI19_g34091_MAGBIO Magnolia biondii HOM05D004853 ORTHO05D005865 5.6e-259 897.5 602 77.6
Atru.chr6.1420 Acer truncatum HOM05D004853 ORTHO05D005865 6.1e-258 894.0 603 78.4
Thecc.01G221500 Theobroma cacao HOM05D004853 ORTHO05D005865 6.1e-258 894.0 603 77.1
EL10Ac7g17891 Beta vulgaris HOM05D004853 ORTHO05D005865 1.0e-257 893.3 614 76.1
Gohir.A07G199600 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.8e-257 892.5 603 77.1
Gorai.001G232300 Gossypium raimondii HOM05D004853 ORTHO05D005865 2.3e-257 892.1 603 76.9
Gohir.D07G206000 Gossypium hirsutum HOM05D004853 ORTHO05D005865 3.0e-257 891.7 603 76.9
Hma1.2p1_0226F.1_g095440 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 3.0e-257 891.7 600 78.0
Hma1.2p1_2668F.1_g326580 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 3.0e-257 891.7 600 78.0
COL.COLO4_15628 Corchorus olitorius HOM05D004853 ORTHO05D005865 2.6e-256 888.6 602 78.1
Sc17g0002190 Simmondsia chinensis HOM05D004853 ORTHO05D005865 2.2e-255 885.6 609 75.2
Duzib138G1868 Durio zibethinus HOM05D004853 ORTHO05D005865 2.9e-255 885.2 603 76.8
Rhsim09G0044900 Rhododendron simsii HOM05D004853 ORTHO05D005865 3.7e-255 884.8 603 75.5
Lj3C839T9 Lonicera japonica HOM05D004853 ORTHO05D005865 4.9e-255 884.4 596 75.7
Peaxi162Scf00238g00032 Petunia axillaris HOM05D004853 ORTHO05D005865 8.3e-255 883.6 600 75.7
AUR62043704 Chenopodium quinoa HOM05D004853 ORTHO05D005865 2.4e-254 882.1 614 72.1
AUR62038821 Chenopodium quinoa HOM05D004853 ORTHO05D005865 3.2e-254 881.7 614 72.0
MSTRG.18839 Avicennia marina HOM05D004853 ORTHO05D005865 5.4e-254 880.9 602 76.2
Aqoxy1G00113 Aquilegia oxysepala HOM05D004853 ORTHO05D005865 9.2e-254 880.2 603 75.1
THA.LOC104808789 Tarenaya hassleriana HOM05D004853 ORTHO05D005865 2.0e-253 879.0 610 77.2
Cpa.g.sc43.113 Carica papaya HOM05D004853 ORTHO05D005865 1.3e-252 876.3 611 75.9
Nitab4.5_0000045g0440 Nicotiana tabacum HOM05D004853 ORTHO05D005865 2.3e-252 875.5 602 75.1
Nitab4.5_0007437g0010 Nicotiana tabacum HOM05D004853 ORTHO05D005865 5.0e-252 874.4 602 74.8
Solyc09g059440.1 Solanum lycopersicum HOM05D004853 ORTHO05D005865 6.6e-252 874.0 602 74.9
Sopen09g022590 Solanum pennellii HOM05D004853 ORTHO05D005865 1.1e-251 873.2 602 75.4
PGSC0003DMG400027946 Solanum tuberosum HOM05D004853 ORTHO05D005865 1.9e-251 872.5 602 75.7
Cc01_g16780 Coffea canephora HOM05D004853 ORTHO05D005865 2.5e-251 872.1 602 76.1
Actinidia09471 Actinidia chinensis HOM05D004853 ORTHO05D005865 5.6e-251 870.9 603 75.8
BraA03t13534Z Brassica rapa HOM05D004853 ORTHO05D005865 6.2e-250 867.5 601 75.2
Actinidia23713 Actinidia chinensis HOM05D004853 ORTHO05D005865 8.0e-250 867.1 602 75.2
CARHR101430 Cardamine hirsuta HOM05D004853 ORTHO05D005865 1.8e-249 865.9 602 74.3
Sp3g22680 Schrenkiella parvula HOM05D004853 ORTHO05D005865 1.8e-249 865.9 602 74.4
BcaB06g26724 Brassica carinata HOM05D004853 ORTHO05D005865 5.2e-249 864.4 604 74.7
BcaB08g34434 Brassica carinata HOM05D004853 ORTHO05D005865 8.9e-249 863.6 602 75.6
Oeu037767.1 Olea europaea HOM05D004853 ORTHO05D005865 8.9e-249 863.6 602 74.3
BcaC06g35779 Brassica carinata HOM05D004853 ORTHO05D005865 1.2e-248 863.2 604 73.2
BolC7t41562H Brassica oleracea HOM05D004853 ORTHO05D005865 1.2e-248 863.2 604 73.2
DCAR_004725 Daucus carota HOM05D004853 ORTHO05D005865 4.9e-247 857.8 603 75.1
Gorai.007G156000 Gossypium raimondii HOM05D004853 ORTHO05D005865 6.4e-247 857.4 603 74.6
BcaC01g03244 Brassica carinata HOM05D004853 ORTHO05D005865 2.4e-246 855.5 601 73.9
C03p54420 Brassica napus HOM05D004853 ORTHO05D005865 2.4e-246 855.5 601 73.9
BolC3t17728H Brassica oleracea HOM05D004853 ORTHO05D005865 2.4e-246 855.5 601 73.9
SGA_v2.0_scaffold18G08333 Striga asiatica HOM05D004853 ORTHO05D005865 2.4e-246 855.5 600 73.8
Aa31LG8G11930 Aethionema arabicum HOM05D004853 ORTHO05D005865 1.3e-244 849.7 609 72.1
AL3G40790 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 2.3e-244 849.0 605 73.9
Aa31LG9G4920 Aethionema arabicum HOM05D004853 ORTHO05D005865 3.9e-244 848.2 603 74.1
AT3G25100 Arabidopsis thaliana HOM05D004853 ORTHO05D005865 1.1e-243 846.7 605 73.7
Thhalv10002454m.g Eutrema salsugineum HOM05D004853 ORTHO05D005865 2.5e-243 845.5 603 73.1
CAN.G128.1 Capsicum annuum HOM05D004853 ORTHO05D005865 4.3e-243 844.7 600 73.7
Ah.15g093470 Amaranthus hybridus HOM05D004853 ORTHO05D005865 9.5e-243 843.6 614 72.1
SalBow6G4054 Salvia bowleyana HOM05D004853 ORTHO05D005865 1.2e-242 843.2 600 72.3
CDE07G1728 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 1.5e-240 836.3 593 73.4
BraA07t28514Z Brassica rapa HOM05D004853 ORTHO05D005865 2.0e-240 835.9 605 71.2
HanXRQChr10g0288791 Helianthus annuus HOM05D004853 ORTHO05D005865 3.4e-240 835.1 600 74.0
Carub.0003s2543 Capsella rubella HOM05D004853 ORTHO05D005865 4.4e-240 834.7 605 73.4
A07p07260 Brassica napus HOM05D004853 ORTHO05D005865 7.5e-240 833.9 605 70.7
Lsat_1_v5_gn_8_89600 Lactuca sativa HOM05D004853 ORTHO05D005865 9.9e-240 833.6 607 73.6
HanXRQChr14g0439971 Helianthus annuus HOM05D004853 ORTHO05D005865 1.7e-239 832.8 600 73.3
Psat3g148200 Pisum sativum HOM05D004853 ORTHO05D005865 1.2e-237 826.6 610 71.0
Ca_06554_v3 Cicer arietinum L. HOM05D004853 ORTHO05D005865 1.3e-236 823.2 616 71.1
unitig_899.g15017 Utricularia gibba HOM05D004853 ORTHO05D005865 2.3e-236 822.4 603 71.0
unitig_736.g22343 Utricularia gibba HOM05D004853 ORTHO05D005865 4.3e-235 818.1 603 70.5
Phvul.008G130700 Phaseolus vulgaris HOM05D004853 ORTHO05D005865 9.5e-235 817.0 599 71.8
Glyma.08G349400 Glycine max HOM05D004853 ORTHO05D005865 4.0e-233 811.6 599 71.3
ECA236G0997 Erigeron canadensis HOM05D004853 ORTHO05D005865 2.9e-231 805.4 600 72.3
Migut.D02501 Erythranthe guttata HOM05D004853 ORTHO05D005865 6.4e-231 804.3 601 71.4
Glyma.18G167000 Glycine max HOM05D004853 ORTHO05D005865 2.4e-230 802.4 599 70.6
Medtr7g056153 Medicago truncatula HOM05D004853 ORTHO05D005865 3.2e-230 802.0 605 69.9
Lalb_Chr03g0041521 Lupinus albus HOM05D004853 ORTHO05D005865 2.1e-229 799.3 602 69.9
GSVIVG01000797001 Vitis vinifera HOM05D004853 ORTHO05D005865 2.7e-229 798.9 600 67.8
VMungo1383G0658 Vigna mungo HOM05D004853 ORTHO05D005865 6.6e-228 794.3 599 70.3
CDE04G0889 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 1.1e-227 793.5 602 68.8
A03p44030 Brassica napus HOM05D004853 ORTHO05D005865 1.2e-226 790.0 551 74.2
C07p10970 Brassica napus HOM05D004853 ORTHO05D005865 2.1e-226 789.3 554 71.1
Lj1g0018468 Lotus japonicus HOM05D004853 ORTHO05D005865 1.2e-221 773.5 611 68.4
TPR.G6418 Trifolium pratense HOM05D004853 ORTHO05D005865 1.1e-219 766.9 645 65.4
Gohir.D07G205900 Gossypium hirsutum HOM05D004853 ORTHO05D005865 4.3e-219 765.0 603 68.7
Os11g0128400 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 2.4e-217 759.2 615 66.0
Gohir.A11G139300 Gossypium hirsutum HOM05D004853 ORTHO05D005865 6.9e-217 757.7 603 67.8
Dinv19180 Davidia involucrata HOM05D004853 ORTHO05D005865 9.0e-217 757.3 603 68.2
CAN.G257.5 Capsicum annuum HOM05D004853 ORTHO05D005865 2.0e-216 756.1 529 75.2
Os12g0124700 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 1.7e-215 753.1 615 65.5
Zm00001eb405460 Zea mays HOM05D004853 ORTHO05D005865 3.0e-212 742.3 619 64.1
DCAR_004733 Daucus carota HOM05D004853 ORTHO05D005865 5.6e-211 738.0 602 67.3
SEGI_13565 Sequoiadendron giganteum HOM05D004853 ORTHO05D005865 3.4e-208 728.8 600 65.5
ATR0068G062 Amborella trichopoda HOM05D004853 ORTHO05D005865 7.1e-206 721.1 600 65.7
Gorai.001G232100 Gossypium raimondii HOM05D004853 ORTHO05D005865 2.7e-197 692.6 569 64.9
Gohir.D11G145500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.1e-190 670.6 477 73.8
AL706U10010 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 2.2e-175 619.8 497 69.0
Gohir.A07G199500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 4.7e-173 612.1 603 58.5
CSS0045377 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 2.5e-166 589.7 523 64.4
Pp3c23_19980 Physcomitrium patens HOM05D004853 ORTHO05D005865 4.7e-157 558.9 602 51.5
SMO307G0064 Selaginella moellendorffii HOM05D004853 ORTHO05D005865 5.4e-153 545.4 606 51.7
Mapoly0045s0042 Marchantia polymorpha HOM05D004853 ORTHO05D005865 4.7e-149 532.3 605 52.2
AagrBONN_evm.TU.Sc2ySwM_117.731 Anthoceros agrestis HOM05D004853 ORTHO05D005865 3.9e-135 486.1 616 45.0
arahy.Tifrunner.gnm1.ann1.23GIHT Arachis hypogaea HOM05D004853 ORTHO05D005865 3.3e-134 483.0 598 51.0
CBR_g40148 Chara braunii HOM05D004853 ORTHO05D005865 3.9e-127 459.5 592 45.6
CAN.G186.62 Capsicum annuum HOM05D004853 ORTHO05D005865 2.9e-90 337.0 209 77.0
CSS0030898 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 1.9e-86 324.3 243 65.0
CBR_g23403 Chara braunii HOM05D004853 ORTHO05D005865 7.9e-80 302.4 324 51.5
MCO03G169 Micromonas commoda HOM05D004853 ORTHO05D005865 3.1e-76 290.4 622 36.2
HPP92_007506 Vanilla planifolia HOM05D004853 ORTHO05D005865 5.7e-70 269.6 242 66.1
CSS0009877 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 1.3e-66 258.5 275 54.5
PRCOL_00002078 Prasinoderma coloniale HOM05D004853 ORTHO05D005865 3.8e-58 230.3 593 27.2
Sabra02G0118100 Salix brachista HOM05D004853 ORTHO05D005865 2.0e-51 208.0 148 70.3
Ah.03g146210 Amaranthus hybridus HOM05D004853 ORTHO05D005865 1.0e-47 195.7 151 65.6
AUR62016553 Chenopodium quinoa HOM05D004853 ORTHO05D005865 2.8e-32 144.4 201 44.3
Zm00001eb163660 Zea mays HOM05D004853 ORTHO05D005865 8.0e-32 142.9 98 69.4
Cre06.g270250 Chlamydomonas reinhardtii HOM05D004853 ORTHO05D005865 2.9e-29 134.4 625 25.3
ECA233G3738 Erigeron canadensis HOM05D004853 ORTHO05D005865 1.2e-24 119.0 77 74.0
BraA03t13535Z Brassica rapa HOM05D004853 ORTHO05D005865 1.3e-21 109.0 79 60.8
CAN.G186.61 Capsicum annuum HOM05D004853 ORTHO05D005865 4.9e-21 107.1 216 49.5
A03p44050 Brassica napus HOM05D004853 ORTHO05D005865 1.1e-20 105.9 79 59.5
CBR_g23402 Chara braunii HOM05D004853 ORTHO05D005865 3.9e-18 97.4 121 42.1
Zm00001eb163670 Zea mays HOM05D004853 ORTHO05D005865 1.2e-14 85.9 90 47.8
AUR62016554 Chenopodium quinoa HOM05D004853 ORTHO05D005865 7.1e-12 76.6 59 66.1
Sabra10G0126900 Salix brachista HOM05D004853 ORTHO05D005865 8.9e-07 59.7 102 38.2


User provided reference genes

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