Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g18560 Fragaria vesca HOM05D005604 ORTHO05D006745 0.0e+00 1086.2 552 100.0
FAN24G1841 Fragaria x ananassa HOM05D005604 ORTHO05D006745 0.0e+00 1081.2 552 98.7
FAN15G1583 Fragaria x ananassa HOM05D005604 ORTHO05D006745 0.0e+00 1077.8 552 99.1
FAN27G1924 Fragaria x ananassa HOM05D005604 ORTHO05D006745 1.7e-310 1068.5 553 97.1
RcHm_v2.0_Chr6g0284121 Rosa chinensis HOM05D005604 ORTHO05D006745 1.5e-298 1028.9 552 94.9
Prupe.8G199200 Prunus persica HOM05D005604 ORTHO05D006745 3.8e-262 907.9 553 84.6
MD10G1160100 Malus domestica HOM05D005604 ORTHO05D006745 7.6e-255 883.6 553 83.2
MD05G1171800 Malus domestica HOM05D005604 ORTHO05D006745 2.9e-254 881.7 553 82.8
Thecc.01G220400 Theobroma cacao HOM05D005604 ORTHO05D006745 1.7e-238 829.3 556 78.2
COL.COLO4_15621 Corchorus olitorius HOM05D005604 ORTHO05D006745 1.4e-237 826.2 561 78.1
Dinv12653 Davidia involucrata HOM05D005604 ORTHO05D006745 1.9e-237 825.9 556 79.0
Potri.002G245700 Populus trichocarpa HOM05D005604 ORTHO05D006745 1.3e-233 813.1 556 76.6
CSS0000075 Camellia sinensis var. sinensis HOM05D005604 ORTHO05D006745 1.7e-233 812.8 556 76.8
CANSAT01G1141 Cannabis sativa HOM05D005604 ORTHO05D006745 9.1e-232 807.0 558 76.2
Dinv19175 Davidia involucrata HOM05D005604 ORTHO05D006745 1.2e-231 806.6 557 77.7
Atru.chr6.1423 Acer truncatum HOM05D005604 ORTHO05D006745 2.6e-231 805.4 565 76.3
Gorai.001G231700 Gossypium raimondii HOM05D005604 ORTHO05D006745 3.8e-230 801.6 554 75.3
Cpa.g.sc43.114 Carica papaya HOM05D005604 ORTHO05D006745 5.0e-230 801.2 557 77.2
Gohir.D07G205700 Gossypium hirsutum HOM05D005604 ORTHO05D006745 1.5e-229 799.7 554 75.1
Duzib138G1747 Durio zibethinus HOM05D005604 ORTHO05D006745 2.7e-228 795.4 556 75.7
QL09p051278 Quercus lobata HOM05D005604 ORTHO05D006745 3.6e-228 795.0 554 75.8
CiPaw.01G050300 Carya illinoinensis HOM05D005604 ORTHO05D006745 4.0e-227 791.6 557 74.7
GSVIVG01003930001 Vitis vinifera HOM05D005604 ORTHO05D006745 1.1e-226 790.0 557 76.8
Duzib133G0023 Durio zibethinus HOM05D005604 ORTHO05D006745 2.0e-226 789.3 556 76.1
Gohir.A07G199300 Gossypium hirsutum HOM05D005604 ORTHO05D006745 4.8e-225 784.6 554 74.5
Ciclev10019544m.g Citrus clementina HOM05D005604 ORTHO05D006745 4.1e-224 781.6 559 75.0
CiPaw.02G023400 Carya illinoinensis HOM05D005604 ORTHO05D006745 1.1e-221 773.5 556 75.2
Eucgr.K02139 Eucalyptus grandis HOM05D005604 ORTHO05D006745 2.2e-217 759.2 555 73.3
Actinidia39432 Actinidia chinensis HOM05D005604 ORTHO05D006745 8.3e-217 757.3 556 73.0
TWI36G0921 Tripterygium wilfordii HOM05D005604 ORTHO05D006745 6.5e-214 747.7 558 72.0
Rhsim13G0047500 Rhododendron simsii HOM05D005604 ORTHO05D006745 1.0e-211 740.3 560 72.1
TWI18G0325 Tripterygium wilfordii HOM05D005604 ORTHO05D006745 8.8e-211 737.3 558 72.6
Actinidia30055 Actinidia chinensis HOM05D005604 ORTHO05D006745 2.8e-209 732.3 518 75.7
Haze_15255 Corylus avellana HOM05D005604 ORTHO05D006745 4.9e-209 731.5 648 64.8
Hma1.2p1_0226F.1_g095420 Hydrangea macrophylla HOM05D005604 ORTHO05D006745 1.4e-208 729.9 556 69.6
TAR633G2144 Trochodendron aralioides HOM05D005604 ORTHO05D006745 9.1e-208 727.2 560 69.6
vmacro02782 Vaccinium macrocarpon HOM05D005604 ORTHO05D006745 9.1e-208 727.2 607 65.4
TAR362G0631 Trochodendron aralioides HOM05D005604 ORTHO05D006745 1.6e-207 726.5 562 69.6
Glyma.18G167400 Glycine max HOM05D005604 ORTHO05D006745 2.3e-206 722.6 562 72.2
Lj1g0022594 Lotus japonicus HOM05D005604 ORTHO05D006745 2.5e-205 719.2 538 72.9
PGSC0003DMG400027951 Solanum tuberosum HOM05D005604 ORTHO05D006745 9.5e-205 717.2 557 69.5
VMungo1383G0872 Vigna mungo HOM05D005604 ORTHO05D006745 1.2e-204 716.8 560 70.4
Psat3g148680 Pisum sativum HOM05D005604 ORTHO05D006745 6.1e-204 714.5 562 70.5
CsaV3_7G026370 Cucumis sativus L. HOM05D005604 ORTHO05D006745 1.8e-203 713.0 558 71.0
Solyc09g059470.4 Solanum lycopersicum HOM05D005604 ORTHO05D006745 2.3e-203 712.6 558 68.8
Sopen09g022640 Solanum pennellii HOM05D005604 ORTHO05D006745 5.2e-203 711.4 558 68.5
ClCG09G008600 Citrullus lanatus HOM05D005604 ORTHO05D006745 2.0e-202 709.5 558 70.6
Nitab4.5_0009005g0020 Nicotiana tabacum HOM05D005604 ORTHO05D006745 4.4e-202 708.4 557 67.7
arahy.Tifrunner.gnm1.ann1.6511ZK Arachis hypogaea HOM05D005604 ORTHO05D006745 9.8e-202 707.2 558 71.5
Sopen06g034740 Solanum pennellii HOM05D005604 ORTHO05D006745 6.4e-201 704.5 555 67.4
PGSC0003DMG400020164 Solanum tuberosum HOM05D005604 ORTHO05D006745 2.4e-200 702.6 555 67.6
arahy.Tifrunner.gnm1.ann1.S4VI32 Arachis hypogaea HOM05D005604 ORTHO05D006745 4.1e-200 701.8 557 71.3
Sed0019682 Sechium edule HOM05D005604 ORTHO05D006745 1.6e-199 699.9 556 69.1
Medtr7g056243 Medicago truncatula HOM05D005604 ORTHO05D006745 2.0e-199 699.5 540 70.9
MELO3C021083.2 Cucumis melo HOM05D005604 ORTHO05D006745 3.5e-199 698.7 558 70.1
Glyma.08G349100 Glycine max HOM05D005604 ORTHO05D006745 4.6e-199 698.4 566 69.6
CAN.G874.4 Capsicum annuum HOM05D005604 ORTHO05D006745 5.9e-199 698.0 557 67.3
PSO063G0087 Papaver somniferum HOM05D005604 ORTHO05D006745 3.9e-198 695.3 562 66.9
Solyc06g083370.3 Solanum lycopersicum HOM05D005604 ORTHO05D006745 5.6e-197 691.4 556 66.5
MSTRG.18511 Avicennia marina HOM05D005604 ORTHO05D006745 1.2e-196 690.3 553 66.7
PSO017G3308 Papaver somniferum HOM05D005604 ORTHO05D006745 1.0e-195 687.2 562 66.4
Lalb_Chr13g0291101 Lupinus albus HOM05D005604 ORTHO05D006745 1.4e-195 686.8 566 68.7
Nitab4.5_0003020g0080 Nicotiana tabacum HOM05D005604 ORTHO05D006745 1.8e-195 686.4 576 65.1
Ah.15g093490 Amaranthus hybridus HOM05D005604 ORTHO05D006745 1.3e-193 680.2 585 64.1
Lj1A89T69 Lonicera japonica HOM05D005604 ORTHO05D006745 1.7e-193 679.9 613 63.8
MBI07_g18990_MAGBIO Magnolia biondii HOM05D005604 ORTHO05D006745 3.7e-193 678.7 561 65.4
DCAR_004740 Daucus carota HOM05D005604 ORTHO05D006745 7.0e-192 674.5 558 65.6
Phvul.008G130900 Phaseolus vulgaris HOM05D005604 ORTHO05D006745 1.6e-191 673.3 549 68.1
AUR62001131 Chenopodium quinoa HOM05D005604 ORTHO05D006745 3.5e-191 672.2 575 64.5
Migut.D00766 Erythranthe guttata HOM05D005604 ORTHO05D006745 3.5e-191 672.2 554 68.1
Sabra02G0187000 Salix brachista HOM05D005604 ORTHO05D006745 7.8e-191 671.0 493 73.0
DCAR_012669 Daucus carota HOM05D005604 ORTHO05D006745 5.0e-190 668.3 559 65.7
AUR62016550 Chenopodium quinoa HOM05D005604 ORTHO05D006745 4.3e-189 665.2 575 64.0
PGR044G1204 Punica granatum HOM05D005604 ORTHO05D006745 6.2e-188 661.4 569 66.3
THA.LOC104822492 Tarenaya hassleriana HOM05D005604 ORTHO05D006745 2.6e-186 656.0 566 65.9
HanXRQChr04g0108051 Helianthus annuus HOM05D005604 ORTHO05D006745 5.8e-186 654.8 556 65.1
Nitab4.5_0003317g0030 Nicotiana tabacum HOM05D005604 ORTHO05D006745 2.9e-185 652.5 692 55.1
Nitab4.5_0000045g0530 Nicotiana tabacum HOM05D005604 ORTHO05D006745 1.2e-183 647.1 691 54.6
Cc01_g16720 Coffea canephora HOM05D005604 ORTHO05D006745 5.6e-181 638.3 557 64.5
Manes.13G049200 Manihot esculenta HOM05D005604 ORTHO05D006745 1.4e-179 633.6 452 76.1
Thhalv10020454m.g Eutrema salsugineum HOM05D005604 ORTHO05D006745 4.0e-179 632.1 572 64.0
CARHR081860 Cardamine hirsuta HOM05D005604 ORTHO05D006745 8.9e-179 630.9 580 63.6
EL10Ac7g17895 Beta vulgaris HOM05D005604 ORTHO05D006745 1.5e-178 630.2 581 60.2
Carub.0003s0673 Capsella rubella HOM05D005604 ORTHO05D006745 2.0e-178 629.8 571 64.3
Aa31LG5G17790 Aethionema arabicum HOM05D005604 ORTHO05D006745 1.3e-177 627.1 569 63.6
AT3G07210 Arabidopsis thaliana HOM05D005604 ORTHO05D006745 1.3e-177 627.1 573 63.5
BcaC05g29746 Brassica carinata HOM05D005604 ORTHO05D006745 1.3e-177 627.1 571 63.6
Aqoxy2G03983 Aquilegia oxysepala HOM05D005604 ORTHO05D006745 3.7e-177 625.5 566 62.4
THA.LOC104802659 Tarenaya hassleriana HOM05D005604 ORTHO05D006745 1.1e-176 624.0 577 64.3
ECA236G4946 Erigeron canadensis HOM05D005604 ORTHO05D006745 3.2e-176 622.5 514 65.6
Peaxi162Scf01312g00047 Petunia axillaris HOM05D005604 ORTHO05D006745 9.2e-176 620.9 471 68.8
AL3G18480 Arabidopsis lyrata HOM05D005604 ORTHO05D006745 6.0e-175 618.2 571 63.0
Sp3g06160 Schrenkiella parvula HOM05D005604 ORTHO05D006745 7.8e-175 617.8 573 62.8
Peaxi162Scf00068g02416 Petunia axillaris HOM05D005604 ORTHO05D006745 1.0e-174 617.5 639 56.8
Lsat_1_v5_gn_9_15140 Lactuca sativa HOM05D005604 ORTHO05D006745 3.8e-169 599.0 564 62.1
BcaC05g29850 Brassica carinata HOM05D005604 ORTHO05D006745 3.6e-164 582.4 577 61.7
C05p60150 Brassica napus HOM05D005604 ORTHO05D006745 5.3e-163 578.6 572 61.9
BolC5t34666H Brassica oleracea HOM05D005604 ORTHO05D006745 5.3e-163 578.6 572 61.9
Lsat_1_v5_gn_8_89380 Lactuca sativa HOM05D005604 ORTHO05D006745 1.7e-161 573.5 562 61.0
BraA05t22827Z Brassica rapa HOM05D005604 ORTHO05D006745 2.4e-160 569.7 575 59.7
A05p41000 Brassica napus HOM05D005604 ORTHO05D006745 4.2e-160 568.9 575 59.7
HanXRQChr10g0279511 Helianthus annuus HOM05D005604 ORTHO05D006745 1.1e-155 554.3 561 57.9
unitig_60.g25697 Utricularia gibba HOM05D005604 ORTHO05D006745 3.2e-152 542.7 557 56.0
ECA247G0587 Erigeron canadensis HOM05D005604 ORTHO05D006745 4.2e-152 542.3 529 59.7
unitig_0.g223 Utricularia gibba HOM05D005604 ORTHO05D006745 8.7e-150 534.6 563 57.4
Nn1g07990 Nelumbo nucifera HOM05D005604 ORTHO05D006745 3.7e-148 529.3 432 68.3
ATR0561G172 Amborella trichopoda HOM05D005604 ORTHO05D006745 1.1e-139 501.1 569 53.3
DCAR_004736 Daucus carota HOM05D005604 ORTHO05D006745 1.4e-139 500.7 416 66.8
Hund05575 Selenicereus undatus HOM05D005604 ORTHO05D006745 8.5e-137 491.5 583 50.6
Zm00001eb143450 Zea mays HOM05D005604 ORTHO05D006745 8.5e-137 491.5 569 52.0
Os01g0917200 Oryza sativa ssp. japonica HOM05D005604 ORTHO05D006745 1.8e-131 473.8 568 52.3
HPP92_011784 Vanilla planifolia HOM05D005604 ORTHO05D006745 3.8e-129 466.1 560 52.3
Sc05g0001960 Simmondsia chinensis HOM05D005604 ORTHO05D006745 1.8e-126 457.2 399 61.9
CDE05G2031 Ceratophyllum demersum HOM05D005604 ORTHO05D006745 1.3e-124 451.1 558 48.9
Zm00001eb175070 Zea mays HOM05D005604 ORTHO05D006745 5.0e-97 359.4 562 44.0
Os08g0528800 Oryza sativa ssp. japonica HOM05D005604 ORTHO05D006745 1.6e-90 337.8 553 41.6
SGA_v2.0_scaffold158G37516 Striga asiatica HOM05D005604 ORTHO05D006745 1.6e-90 337.8 466 47.9
TPR.G6488 Trifolium pratense HOM05D005604 ORTHO05D006745 1.7e-89 334.3 305 62.6
CDE05G1628 Ceratophyllum demersum HOM05D005604 ORTHO05D006745 3.3e-80 303.5 361 49.3
CAN.G1432.2 Capsicum annuum HOM05D005604 ORTHO05D006745 9.5e-80 302.0 501 41.5
SEGI_00167 Sequoiadendron giganteum HOM05D005604 ORTHO05D006745 8.9e-54 215.7 264 46.6
DCAR_026186 Daucus carota HOM05D005604 ORTHO05D006745 2.4e-51 207.6 470 37.0
ECA247G2712 Erigeron canadensis HOM05D005604 ORTHO05D006745 7.4e-32 142.9 159 56.6
Manes.12G047141 Manihot esculenta HOM05D005604 ORTHO05D006745 9.0e-30 136.0 86 77.9
Gohir.A05G304001 Gossypium hirsutum HOM05D005604 ORTHO05D006745 2.2e-28 131.3 117 60.7
TPR.G6487 Trifolium pratense HOM05D005604 ORTHO05D006745 2.1e-26 124.8 91 71.4
Oeu057862.1 Olea europaea HOM05D005604 ORTHO05D006745 4.8e-23 113.6 84 66.7
SMO117G0236 Selaginella moellendorffii HOM05D005604 ORTHO05D006745 2.9e-20 104.4 207 30.4
AagrBONN_evm.TU.Sc2ySwM_117.906 Anthoceros agrestis HOM05D005604 ORTHO05D006745 2.3e-17 94.7 237 30.8
Mapoly0029s0037 Marchantia polymorpha HOM05D005604 ORTHO05D006745 3.0e-17 94.4 239 31.8
AagrBONN_evm.TU.Sc2ySwM_362.1199 Anthoceros agrestis HOM05D005604 ORTHO05D006745 5.1e-17 93.6 226 33.2
Hma1.2p1_1324F.1_g275630 Hydrangea macrophylla HOM05D005604 ORTHO05D006745 2.8e-15 87.8 74 59.5
AagrBONN_evm.TU.Sc2ySwM_368.1401 Anthoceros agrestis HOM05D005604 ORTHO05D006745 8.2e-15 86.3 229 27.9
QL09p051399 Quercus lobata HOM05D005604 ORTHO05D006745 4.2e-11 73.9 62 66.1
QL09p051344 Quercus lobata HOM05D005604 ORTHO05D006745 5.3e-06 57.0 47 63.8


User provided reference genes

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