Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g18250 Fragaria vesca HOM05D008330 ORTHO05D010281 6.8e-73 277.3 149 100.0
FAN15G3032 Fragaria x ananassa HOM05D008330 ORTHO05D010281 3.1e-70 268.5 149 97.3
FAN27G1390 Fragaria x ananassa HOM05D000599 ORTHO05D000554 1.3e-68 263.1 143 97.9
RcHm_v2.0_Chr6g0283621 Rosa chinensis HOM05D008330 ORTHO05D010281 9.5e-59 230.3 149 84.6
Prupe.8G195400 Prunus persica HOM05D008330 ORTHO05D010281 1.2e-42 176.8 150 68.0
Prupe.8G195200 Prunus persica HOM05D008330 ORTHO05D010281 2.2e-39 166.0 149 59.7
MD05G1166900 Malus domestica HOM05D008330 ORTHO05D010281 2.1e-37 159.5 153 59.5
RcHm_v2.0_Chr6g0283651 Rosa chinensis HOM05D008330 ORTHO05D010281 3.9e-36 155.2 149 57.7
FvH4_2g18301 Fragaria vesca HOM05D008330 ORTHO05D010281 1.5e-35 153.3 149 57.0
Ciclev10032995m.g Citrus clementina HOM05D008330 ORTHO05D010281 1.2e-34 150.2 150 56.0
Thecc.01G215900 Theobroma cacao HOM05D008330 ORTHO05D010281 8.9e-33 144.1 150 54.7
TAR633G1328 Trochodendron aralioides HOM05D008330 ORTHO05D010281 1.9e-30 136.3 150 51.3
Atru.chr6.1449 Acer truncatum HOM05D008330 ORTHO05D010281 3.2e-30 135.6 150 50.0
Manes.13G051600 Manihot esculenta HOM05D008330 ORTHO05D010281 3.2e-30 135.6 150 51.3
TAR633G1148 Trochodendron aralioides HOM05D008330 ORTHO05D010281 7.1e-30 134.4 150 50.0
COL.COLO4_16118 Corchorus olitorius HOM05D008330 ORTHO05D010281 2.1e-29 132.9 150 50.0
MD10G1156800 Malus domestica HOM05D008330 ORTHO05D010281 2.1e-29 132.9 135 55.6
CiPaw.13G049800 Carya illinoinensis HOM05D008330 ORTHO05D010281 7.8e-29 131.0 150 50.0
Manes.12G050200 Manihot esculenta HOM05D008330 ORTHO05D010281 2.3e-28 129.4 150 48.7
Oeu064646.1 Olea europaea HOM05D008330 ORTHO05D010281 3.9e-28 128.6 148 49.3
Potri.002G247600 Populus trichocarpa HOM05D008330 ORTHO05D010281 1.5e-27 126.7 151 46.4
Actinidia09458 Actinidia chinensis HOM05D000599 ORTHO05D010281 9.6e-27 124.0 144 48.6
Duzib133G0427 Durio zibethinus HOM05D008330 ORTHO05D010281 9.6e-27 124.0 150 50.7
Ca_07505_v3 Cicer arietinum L. HOM05D008330 ORTHO05D010281 1.8e-25 119.8 150 46.0
Gohir.A07G091600 Gossypium hirsutum HOM05D008330 ORTHO05D010281 9.0e-25 117.5 150 45.3
Sabra02G0188500 Salix brachista HOM05D001402 ORTHO05D001302 4.4e-24 115.2 143 46.2
Cfa010412 Carpinus fangiana HOM05D008330 ORTHO05D010281 5.8e-24 114.8 150 45.3
CiPaw.14G039500 Carya illinoinensis HOM05D008330 ORTHO05D010281 1.7e-23 113.2 151 44.4
Haze_03361 Corylus avellana HOM05D008330 ORTHO05D010281 2.9e-23 112.5 150 44.7
Gohir.D07G096300 Gossypium hirsutum HOM05D008330 ORTHO05D010281 9.3e-22 107.5 150 43.3
Gorai.001G103600 Gossypium raimondii HOM05D008330 ORTHO05D010281 9.3e-22 107.5 150 43.3
vmacro02798 Vaccinium macrocarpon HOM05D000599 ORTHO05D000554 3.5e-21 105.5 147 44.2
Sc05g0001880 Simmondsia chinensis HOM05D008330 ORTHO05D010281 4.6e-21 105.1 146 40.4
Cpa.g.sc8.116 Carica papaya HOM05D001402 ORTHO05D001302 3.0e-20 102.4 139 39.6
Ah.08g214800 Amaranthus hybridus HOM05D008330 ORTHO05D010281 4.3e-19 98.6 150 38.7
TPR.G29159 Trifolium pratense HOM05D008330 ORTHO05D010281 4.3e-19 98.6 150 41.3
Migut.D02518 Erythranthe guttata HOM05D008330 ORTHO05D010281 9.6e-19 97.4 148 38.5
TPR.G6400 Trifolium pratense HOM05D008330 ORTHO05D010281 8.1e-18 94.4 150 40.0
Nn1g08172 Nelumbo nucifera HOM05D008330 ORTHO05D010281 1.1e-17 94.0 149 38.9
Lsat_1_v5_gn_8_89060 Lactuca sativa HOM05D008330 ORTHO05D010281 4.0e-17 92.0 147 38.1
Lj1g0017201 Lotus japonicus HOM05D008330 ORTHO05D010281 2.6e-16 89.4 150 41.3
arahy.Tifrunner.gnm1.ann1.02NPIP Arachis hypogaea HOM05D008330 ORTHO05D010281 4.5e-16 88.6 148 37.2
arahy.Tifrunner.gnm1.ann1.P3ZVD3 Arachis hypogaea HOM05D008330 ORTHO05D010281 9.9e-16 87.4 148 36.5
AUR62001154 Chenopodium quinoa HOM05D008330 ORTHO05D010281 4.9e-15 85.1 146 34.9
ATR0561G155 Amborella trichopoda HOM05D008330 ORTHO05D010281 2.4e-14 82.8 147 35.4
Sopen09g020990 Solanum pennellii HOM05D008330 ORTHO05D010281 6.0e-13 78.2 118 40.7
MBI11_g07404_MAGBIO Magnolia biondii HOM05D002127 ORTHO05D002274 7.9e-13 77.8 135 36.3
Carub.0003s2557 Capsella rubella HOM05D014270 ORTHO05D010281 1.5e-11 73.6 145 34.5
Nn1g08173 Nelumbo nucifera HOM05D008330 ORTHO05D010281 1.9e-11 73.2 149 36.9
PGSC0003DMG400008729 Solanum tuberosum HOM05D008330 ORTHO05D010281 1.9e-11 73.2 150 33.3
ECA236G1728 Erigeron canadensis HOM05D008330 ORTHO05D010281 9.6e-11 70.9 148 33.1
AL3G41070 Arabidopsis lyrata HOM05D014270 ORTHO05D010281 1.3e-10 70.5 145 33.8
Nn3g20084 Nelumbo nucifera HOM05D008330 ORTHO05D010281 1.6e-10 70.1 149 35.6
Glyma.18G158600 Glycine max HOM05D008330 ORTHO05D010281 2.8e-10 69.3 148 33.8
AL3G40920 Arabidopsis lyrata HOM05D014270 ORTHO05D010281 8.1e-10 67.8 145 33.1
CARHR101550 Cardamine hirsuta HOM05D014270 ORTHO05D010281 8.1e-10 67.8 141 35.5
Medtr7g053580 Medicago truncatula HOM05D008330 ORTHO05D010281 2.4e-09 66.2 75 45.3
Zm00001eb241320 Zea mays HOM05D008330 ORTHO05D443670 2.4e-09 66.2 144 33.3
BolC7t41540H Brassica oleracea HOM05D014270 ORTHO05D010281 1.5e-08 63.5 145 32.4
C07p10740 Brassica napus HOM05D014270 ORTHO05D010281 2.6e-08 62.8 145 32.4
Thhalv10002922m.g Eutrema salsugineum HOM05D014270 ORTHO05D010281 2.6e-08 62.8 145 32.4
Sp3g22820 Schrenkiella parvula HOM05D014270 ORTHO05D010281 3.4e-08 62.4 148 31.1
vmacro14718 Vaccinium macrocarpon HOM05D000599 ORTHO05D000554 3.4e-08 62.4 104 41.3
Ah.08g214810 Amaranthus hybridus HOM05D008330 ORTHO05D010281 5.8e-08 61.6 152 31.6
A07p07130 Brassica napus HOM05D014270 ORTHO05D010281 9.9e-08 60.8 145 31.7
TWI18G0253 Tripterygium wilfordii HOM05D008330 ORTHO05D010281 1.3e-07 60.5 55 60.0
Rhsim01G0250700 Rhododendron simsii HOM05D000599 ORTHO05D000554 1.7e-07 60.1 112 40.2
Rhsim13G0050400 Rhododendron simsii HOM05D008330 ORTHO05D010281 4.9e-07 58.5 151 32.5
AUR62016522 Chenopodium quinoa HOM05D008330 ORTHO05D010281 5.5e-06 55.1 110 31.8


User provided reference genes

Program Settings