Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g17650 Fragaria vesca HOM05D006548 ORTHO05D008064 2.9e-82 308.5 159 100.0
FAN27G0042 Fragaria x ananassa HOM05D006548 ORTHO05D008064 7.2e-81 303.9 159 98.7
FAN27G0390 Fragaria x ananassa HOM05D006548 ORTHO05D008064 7.2e-81 303.9 159 98.7
FAN24G3284 Fragaria x ananassa HOM05D006548 ORTHO05D008064 6.1e-80 300.8 159 98.7
RcHm_v2.0_Chr6g0282621 Rosa chinensis HOM05D006548 ORTHO05D008064 3.2e-73 278.5 159 89.3
Atru.chr6.3534 Acer truncatum HOM05D006548 ORTHO05D008064 5.7e-62 241.1 166 75.9
Prupe.8G188900 Prunus persica HOM05D006548 ORTHO05D008064 1.3e-61 240.0 166 77.1
TAR362G1118 Trochodendron aralioides HOM05D006548 ORTHO05D008064 8.3e-61 237.3 165 73.3
Lj2P1115T39 Lonicera japonica HOM05D006548 ORTHO05D008064 1.1e-60 236.9 160 75.0
MD10G1150500 Malus domestica HOM05D006548 ORTHO05D008064 1.8e-60 236.1 164 77.4
PGR083G0463 Punica granatum HOM05D006548 ORTHO05D008064 9.1e-60 233.8 154 74.0
Cpa.g.sc8.57 Carica papaya HOM05D004405 ORTHO05D005613 1.2e-59 233.4 162 73.5
COL.COLO4_06931 Corchorus olitorius HOM05D006548 ORTHO05D008064 1.2e-59 233.4 157 70.7
Sed0004612 Sechium edule HOM05D006548 ORTHO05D008064 1.2e-59 233.4 161 73.9
Gorai.007G160300 Gossypium raimondii HOM05D006548 ORTHO05D008064 2.0e-59 232.6 157 73.2
Gohir.A11G143200 Gossypium hirsutum HOM05D006548 ORTHO05D008064 3.5e-59 231.9 157 73.2
Gohir.D11G149500 Gossypium hirsutum HOM05D006548 ORTHO05D008064 3.5e-59 231.9 158 72.8
Sabra02G0182000 Salix brachista HOM05D006548 ORTHO05D008064 3.5e-59 231.9 165 73.9
Potri.002G239000 Populus trichocarpa HOM05D006548 ORTHO05D008064 7.7e-59 230.7 157 74.5
Manes.13G055300 Manihot esculenta HOM05D006548 ORTHO05D008064 1.0e-58 230.3 157 73.9
PSO017G5831 Papaver somniferum HOM05D006548 ORTHO05D008064 1.0e-58 230.3 162 75.3
Nn3g18599 Nelumbo nucifera HOM05D006548 ORTHO05D008064 1.3e-58 229.9 165 73.3
PSO675G8742 Papaver somniferum HOM05D006548 ORTHO05D008064 2.3e-58 229.2 162 76.5
Rhsim13G0053600 Rhododendron simsii HOM05D006548 ORTHO05D008064 3.8e-58 228.4 161 70.8
vmacro02826 Vaccinium macrocarpon HOM05D006548 ORTHO05D008064 6.6e-58 227.6 157 72.0
Manes.12G059600 Manihot esculenta HOM05D006548 ORTHO05D008064 1.1e-57 226.9 157 73.2
CSS0021481 Camellia sinensis var. sinensis HOM05D006548 ORTHO05D008064 1.5e-57 226.5 165 73.9
Gohir.D07G202600 Gossypium hirsutum HOM05D006548 ORTHO05D008064 1.9e-57 226.1 154 72.1
Gorai.001G228000 Gossypium raimondii HOM05D006548 ORTHO05D008064 2.5e-57 225.7 162 69.8
Sp3g06390 Schrenkiella parvula HOM05D006548 ORTHO05D008064 2.5e-57 225.7 161 72.0
AL3G18800 Arabidopsis lyrata HOM05D006548 ORTHO05D008064 1.2e-56 223.4 157 70.7
AT3G07480 Arabidopsis thaliana HOM05D006548 ORTHO05D008064 1.2e-56 223.4 157 70.7
CARHR082130 Cardamine hirsuta HOM05D006548 ORTHO05D008064 1.2e-56 223.4 160 69.4
CiPaw.13G058400 Carya illinoinensis HOM05D006548 ORTHO05D008064 1.6e-56 223.0 159 71.1
Ciclev10017030m.g Citrus clementina HOM05D006548 ORTHO05D008064 1.6e-56 223.0 160 71.2
Hma1.2p1_0161F.1_g071510 Hydrangea macrophylla HOM05D006548 ORTHO05D008064 6.1e-56 221.1 157 72.0
Nn4g25121 Nelumbo nucifera HOM05D006548 ORTHO05D008064 6.1e-56 221.1 165 70.9
THA.LOC104819003 Tarenaya hassleriana HOM05D006548 ORTHO05D008064 6.1e-56 221.1 160 70.6
Potri.014G177100 Populus trichocarpa HOM05D006548 ORTHO05D008064 8.0e-56 220.7 160 71.2
Nitab4.5_0001348g0010 Nicotiana tabacum HOM05D006548 ORTHO05D008064 1.4e-55 219.9 165 69.7
Nitab4.5_0007144g0040 Nicotiana tabacum HOM05D006548 ORTHO05D008064 1.4e-55 219.9 165 69.7
ClCG09G007890 Citrullus lanatus HOM05D006548 ORTHO05D008064 1.8e-55 219.5 156 71.8
Sabra14G0135300 Salix brachista HOM05D006548 ORTHO05D008064 1.8e-55 219.5 159 70.4
Aa31LG5G18040 Aethionema arabicum HOM05D006548 ORTHO05D008064 2.3e-55 219.2 159 68.6
BolC5t34638H Brassica oleracea HOM05D006548 ORTHO05D008064 2.3e-55 219.2 157 70.1
Carub.0003s0703 Capsella rubella HOM05D006548 ORTHO05D008064 2.3e-55 219.2 157 70.1
Thhalv10021677m.g Eutrema salsugineum HOM05D006548 ORTHO05D008064 3.0e-55 218.8 154 69.5
BcaC05g29539 Brassica carinata HOM05D006548 ORTHO05D008064 4.0e-55 218.4 158 69.0
VMungo1383G2587 Vigna mungo HOM05D006548 ORTHO05D008064 4.0e-55 218.4 154 72.7
CANSAT01G2941 Cannabis sativa HOM05D006548 ORTHO05D008064 5.2e-55 218.0 159 69.8
MBI08_g14954_MAGBIO Magnolia biondii HOM05D006659 ORTHO05D008064 5.2e-55 218.0 161 70.8
Aqoxy2G04054 Aquilegia oxysepala HOM05D006548 ORTHO05D008064 6.8e-55 217.6 160 68.1
arahy.Tifrunner.gnm1.ann1.C7NXRU Arachis hypogaea HOM05D006548 ORTHO05D008064 6.8e-55 217.6 160 68.8
C05p59840 Brassica napus HOM05D006548 ORTHO05D008064 6.8e-55 217.6 157 70.1
Phvul.008G137800 Phaseolus vulgaris HOM05D006548 ORTHO05D008064 8.9e-55 217.2 154 69.5
arahy.Tifrunner.gnm1.ann1.I0E60T Arachis hypogaea HOM05D006548 ORTHO05D008064 1.2e-54 216.9 160 68.8
MELO3C015717.2 Cucumis melo HOM05D006548 ORTHO05D008064 1.2e-54 216.9 165 67.9
A05p40730 Brassica napus HOM05D006548 ORTHO05D008064 1.5e-54 216.5 157 68.8
BraA05t22804Z Brassica rapa HOM05D006548 ORTHO05D008064 1.5e-54 216.5 157 68.8
Duzib138G0849 Durio zibethinus HOM05D006548 ORTHO05D008064 1.5e-54 216.5 157 68.8
Cc01_g16030 Coffea canephora HOM05D006548 ORTHO05D008064 2.0e-54 216.1 161 67.7
CAN.G874.34 Capsicum annuum HOM05D006548 ORTHO05D008064 7.5e-54 214.2 162 68.5
Nitab4.5_0011925g0010 Nicotiana tabacum HOM05D006548 ORTHO05D008064 9.8e-54 213.8 165 69.1
Cfa010631 Carpinus fangiana HOM05D006548 ORTHO05D008064 1.3e-53 213.4 163 69.9
Peaxi162Scf00372g00041 Petunia axillaris HOM05D006548 ORTHO05D008064 1.7e-53 213.0 154 70.8
Duzib211G0675 Durio zibethinus HOM05D006548 ORTHO05D008064 8.3e-53 210.7 157 65.0
Nitab4.5_0002311g0090 Nicotiana tabacum HOM05D006548 ORTHO05D008064 8.3e-53 210.7 162 68.5
BcaB03g14699 Brassica carinata HOM05D006548 ORTHO05D008064 1.1e-52 210.3 159 66.7
CSS0032607 Camellia sinensis var. sinensis HOM05D006548 ORTHO05D008064 1.1e-52 210.3 166 66.9
DCAR_030798 Daucus carota HOM05D006548 ORTHO05D008064 1.1e-52 210.3 156 67.3
HanXRQChr08g0231851 Helianthus annuus HOM05D006548 ORTHO05D008064 1.1e-52 210.3 154 69.5
Oeu051515.1 Olea europaea HOM05D006548 ORTHO05D008064 2.4e-52 209.1 165 66.7
Haze_03573 Corylus avellana HOM05D006548 ORTHO05D008064 4.1e-52 208.4 165 67.3
ECA247G0922 Erigeron canadensis HOM05D006548 ORTHO05D008064 5.4e-52 208.0 156 67.9
Migut.N00670 Erythranthe guttata HOM05D006548 ORTHO05D008064 7.0e-52 207.6 160 64.4
ATR0824G029 Amborella trichopoda HOM05D006548 ORTHO05D008064 2.0e-51 206.1 161 67.7
Glyma.08G343100 Glycine max HOM05D006548 ORTHO05D008064 2.0e-51 206.1 154 66.2
PGSC0003DMG400027686 Solanum tuberosum HOM05D006548 ORTHO05D008064 2.7e-51 205.7 157 68.2
QL09p047049 Quercus lobata HOM05D006548 ORTHO05D008064 3.5e-51 205.3 162 66.0
AUR62028648 Chenopodium quinoa HOM05D006548 ORTHO05D008064 4.6e-51 204.9 165 63.6
Sopen06g034400 Solanum pennellii HOM05D006548 ORTHO05D008064 4.6e-51 204.9 162 67.3
Lj1g0008534 Lotus japonicus HOM05D006548 ORTHO05D008064 7.8e-51 204.1 146 65.8
HPP92_002744 Vanilla planifolia HOM05D006548 ORTHO05D008064 1.7e-50 203.0 164 64.6
TWI75G1339 Tripterygium wilfordii HOM05D006548 ORTHO05D008064 3.9e-50 201.8 154 66.9
Ah.11g050830 Amaranthus hybridus HOM05D006548 ORTHO05D008064 5.0e-50 201.4 141 70.2
MSTRG.17967 Avicennia marina HOM05D006548 ORTHO05D008064 1.1e-49 200.3 157 63.7
unitig_61.g26345 Utricularia gibba HOM05D006548 ORTHO05D008064 1.1e-49 200.3 152 64.5
SGA_v2.0_scaffold95G28706 Striga asiatica HOM05D006548 ORTHO05D008064 1.5e-49 199.9 157 63.1
Thecc.01G209700 Theobroma cacao HOM05D006548 ORTHO05D008064 5.6e-49 198.0 141 70.2
Glyma.18G153900 Glycine max HOM05D006548 ORTHO05D008064 7.3e-49 197.6 154 64.9
Lalb_Chr01g0021941 Lupinus albus HOM05D006548 ORTHO05D008064 1.2e-48 196.8 154 64.9
TWI36G0698 Tripterygium wilfordii HOM05D006548 ORTHO05D008064 1.2e-48 196.8 154 66.2
Zm00001eb102720 Zea mays HOM05D006548 ORTHO05D008064 1.6e-48 196.4 153 64.1
Lalb_Chr03g0040981 Lupinus albus HOM05D006548 ORTHO05D008064 3.6e-48 195.3 159 62.3
TWI18G0731 Tripterygium wilfordii HOM05D006548 ORTHO05D008064 8.0e-48 194.1 151 64.9
Psat3g151760 Pisum sativum HOM05D006548 ORTHO05D008064 1.0e-47 193.7 159 63.5
PGSC0003DMG400020639 Solanum tuberosum HOM05D006548 ORTHO05D008064 1.0e-47 193.7 162 62.3
Solyc06g007630.1 Solanum lycopersicum HOM05D006548 ORTHO05D008064 1.8e-47 193.0 162 62.3
Sopen06g002520 Solanum pennellii HOM05D006548 ORTHO05D008064 1.8e-47 193.0 162 62.3
Os09g0514600 Oryza sativa ssp. japonica HOM05D006548 ORTHO05D008064 2.3e-47 192.6 153 62.1
GSVIVG01003797001 Vitis vinifera HOM05D006548 ORTHO05D008064 1.2e-46 190.3 118 68.6
Ca_07442_v3 Cicer arietinum L. HOM05D006548 ORTHO05D008064 1.5e-46 189.9 157 61.1
TPR.G26806 Trifolium pratense HOM05D006548 ORTHO05D008064 2.6e-46 189.1 157 62.4
Lsat_1_v5_gn_9_16480 Lactuca sativa HOM05D006548 ORTHO05D008064 2.9e-45 185.7 162 64.8
Zm00001eb318350 Zea mays HOM05D006548 ORTHO05D008064 1.4e-44 183.3 157 58.6
Medtr7g051230 Medicago truncatula HOM05D006548 ORTHO05D008064 1.9e-44 183.0 156 58.3
CsaV3_7G027180 Cucumis sativus L. HOM05D006548 ORTHO05D008064 1.6e-43 179.9 149 63.8
Sc05g0001680 Simmondsia chinensis HOM05D006548 ORTHO05D008064 2.8e-40 169.1 138 62.3
EL10Ac5g10597 Beta vulgaris HOM05D006548 ORTHO05D008064 6.2e-40 167.9 109 73.4
Gohir.A07G196200 Gossypium hirsutum HOM05D006548 ORTHO05D008064 1.1e-36 157.1 91 76.9
Pp3c2_31000 Physcomitrium patens HOM05D006548 ORTHO05D008064 7.3e-33 144.4 155 52.3
AagrBONN_evm.TU.Sc2ySwM_362.984 Anthoceros agrestis HOM05D006548 ORTHO05D008064 2.6e-30 136.0 158 47.5
Ciclev10013747m.g Citrus clementina HOM05D006548 ORTHO05D008064 6.4e-29 131.3 82 74.4
CDE12G0850 Ceratophyllum demersum HOM05D006548 ORTHO05D008064 9.2e-28 127.5 77 70.1
BcaC05g29538 Brassica carinata HOM05D006548 ORTHO05D008064 2.1e-27 126.3 105 64.8
C03p67920 Brassica napus HOM05D006548 ORTHO05D008064 1.9e-25 119.8 90 64.4
Mapoly0085s0036 Marchantia polymorpha HOM05D006548 ORTHO05D008064 1.9e-25 119.8 138 46.4
BcaC01g02172 Brassica carinata HOM05D006548 ORTHO05D008064 2.5e-25 119.4 90 64.4
SEGI_16405 Sequoiadendron giganteum HOM05D002489 ORTHO05D002653 5.1e-18 95.1 82 61.0
CBR_g34314 Chara braunii HOM05D006548 ORTHO05D008064 3.1e-15 85.9 166 34.9
Actinidia30005 Actinidia chinensis HOM05D006548 ORTHO05D008064 4.0e-15 85.5 170 44.1
BolC3t19017H Brassica oleracea HOM05D006548 ORTHO05D008064 9.0e-15 84.3 49 75.5
BraA03t13759Z Brassica rapa HOM05D006548 ORTHO05D008064 2.0e-14 83.2 49 77.6
SMO119G0279 Selaginella moellendorffii HOM05D006548 ORTHO05D008064 2.6e-14 82.8 118 37.3
Mapoly0113s0043 Marchantia polymorpha HOM05D006548 ORTHO05D008064 4.8e-08 62.0 131 30.5


User provided reference genes

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