Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g16900 Fragaria vesca HOM05D007297 ORTHO05D009352 1.0e-210 736.5 374 100.0
FAN27G2312 Fragaria x ananassa HOM05D007297 ORTHO05D009352 2.8e-200 701.8 361 98.1
FAN15G2550 Fragaria x ananassa HOM05D007297 ORTHO05D009352 3.6e-200 701.4 363 97.2
RcHm_v2.0_Chr6g0281021 Rosa chinensis HOM05D007297 ORTHO05D009352 2.7e-187 658.7 375 89.3
MD05G1140800 Malus domestica HOM05D007297 ORTHO05D009352 1.7e-157 559.7 372 75.3
Prupe.8G180900 Prunus persica HOM05D007297 ORTHO05D009352 3.6e-155 552.0 371 75.5
MD10G1142400 Malus domestica HOM05D007297 ORTHO05D009352 1.4e-154 550.1 375 74.4
MD05G1140400 Malus domestica HOM05D007297 ORTHO05D009352 9.7e-145 517.3 372 71.2
CANSAT25G3874 Cannabis sativa HOM05D007297 ORTHO05D009352 3.3e-124 449.1 381 61.7
Dinv14179 Davidia involucrata HOM05D007297 ORTHO05D009352 1.2e-121 440.7 343 63.8
CiPaw.05G093700 Carya illinoinensis HOM05D007297 ORTHO05D009352 1.7e-120 436.8 377 62.3
TWI79G0145 Tripterygium wilfordii HOM05D007297 ORTHO05D009352 1.7e-120 436.8 370 60.8
Duzib132G0252 Durio zibethinus HOM05D007297 ORTHO05D009352 1.1e-119 434.1 381 59.8
GSVIVG01023865001 Vitis vinifera HOM05D007297 ORTHO05D009352 3.2e-119 432.6 380 60.5
Thecc.02G146900 Theobroma cacao HOM05D007297 ORTHO05D009352 9.2e-119 431.0 382 58.9
Potri.004G207400 Populus trichocarpa HOM05D007297 ORTHO05D009352 6.0e-118 428.3 319 66.5
CsaV3_7G002000 Cucumis sativus L. HOM05D007297 ORTHO05D009352 5.0e-117 425.2 339 63.7
MELO3C015706.2 Cucumis melo HOM05D007297 ORTHO05D009352 8.6e-117 424.5 379 60.7
Ciclev10028691m.g Citrus clementina HOM05D007297 ORTHO05D009352 1.9e-116 423.3 379 59.4
QL11p056524 Quercus lobata HOM05D007297 ORTHO05D009352 3.6e-115 419.1 373 60.6
ClCG02G003330 Citrullus lanatus HOM05D007297 ORTHO05D009352 8.0e-115 417.9 329 63.8
Sed0028195 Sechium edule HOM05D007297 ORTHO05D009352 1.4e-114 417.2 331 63.7
CSS0008013 Camellia sinensis var. sinensis HOM05D007297 ORTHO05D009352 4.0e-114 415.6 292 67.1
Cfa010687 Carpinus fangiana HOM05D007297 ORTHO05D009352 2.0e-113 413.3 377 60.5
Manes.15G114700 Manihot esculenta HOM05D007297 ORTHO05D009352 3.7e-112 409.1 301 66.8
Gorai.002G014500 Gossypium raimondii HOM05D007297 ORTHO05D009352 5.4e-111 405.2 378 56.3
Gohir.D01G012700 Gossypium hirsutum HOM05D007297 ORTHO05D009352 9.2e-111 404.4 378 56.3
PGR042G0917 Punica granatum HOM05D007297 ORTHO05D009352 1.6e-110 403.7 384 55.7
Gohir.A01G011500 Gossypium hirsutum HOM05D007297 ORTHO05D009352 3.5e-110 402.5 378 56.6
PSO170G5512 Papaver somniferum HOM05D007297 ORTHO05D009352 4.6e-110 402.1 356 57.6
Nn5g31034 Nelumbo nucifera HOM05D007297 ORTHO05D009352 1.3e-109 400.6 370 56.5
Eucgr.H04994 Eucalyptus grandis HOM05D007297 ORTHO05D009352 2.3e-109 399.8 382 56.3
TAR381G0094 Trochodendron aralioides HOM05D007297 ORTHO05D009352 2.5e-108 396.4 330 60.3
MBI05_g18176_MAGBIO Magnolia biondii HOM05D007297 ORTHO05D009352 7.3e-108 394.8 286 62.9
AUR62010181 Chenopodium quinoa HOM05D007297 ORTHO05D009352 2.1e-107 393.3 312 60.9
Aqoxy5G00964 Aquilegia oxysepala HOM05D007297 ORTHO05D009352 8.1e-107 391.3 325 61.5
arahy.Tifrunner.gnm1.ann1.114EL0 Arachis hypogaea HOM05D007297 ORTHO05D009352 8.1e-107 391.3 323 61.9
COL.COLO4_33139 Corchorus olitorius HOM05D007297 ORTHO05D009352 1.1e-106 391.0 343 60.3
EL10Ac9g21544 Beta vulgaris HOM05D007297 ORTHO05D009352 2.3e-106 389.8 375 52.8
Ca_10853_v3 Cicer arietinum L. HOM05D007297 ORTHO05D009352 2.3e-106 389.8 302 64.9
Lj5g0024553 Lotus japonicus HOM05D007297 ORTHO05D009352 1.5e-105 387.1 326 61.0
Rhsim05G0044900 Rhododendron simsii HOM05D007297 ORTHO05D009352 1.5e-105 387.1 341 56.6
AUR62013182 Chenopodium quinoa HOM05D007297 ORTHO05D009352 2.0e-105 386.7 328 57.3
vmacro23445 Vaccinium macrocarpon HOM05D007297 ORTHO05D009352 7.5e-105 384.8 278 64.7
Psat6g204280 Pisum sativum HOM05D007297 ORTHO05D009352 9.9e-105 384.4 312 61.9
Glyma.10G244200 Glycine max HOM05D007297 ORTHO05D009352 2.2e-104 383.3 315 61.6
Phvul.007G061600 Phaseolus vulgaris HOM05D007297 ORTHO05D009352 1.1e-103 380.9 309 61.8
ECA233G4247 Erigeron canadensis HOM05D007297 ORTHO05D009352 6.0e-102 375.2 352 55.7
DCAR_006267 Daucus carota HOM05D007297 ORTHO05D009352 1.0e-101 374.4 287 61.7
HanXRQChr16g0515151 Helianthus annuus HOM05D007297 ORTHO05D009352 1.0e-101 374.4 358 55.3
Oeu032716.1 Olea europaea HOM05D007297 ORTHO05D009352 1.7e-101 373.6 276 66.3
Sc18g0005810 Simmondsia chinensis HOM05D007297 ORTHO05D009352 8.6e-101 371.3 294 58.8
Hund06358 Selenicereus undatus HOM05D007297 ORTHO05D009352 2.5e-100 369.8 320 57.8
VMungo0720G0116 Vigna mungo HOM05D007297 ORTHO05D009352 2.5e-100 369.8 337 57.0
Migut.N01363 Erythranthe guttata HOM05D007297 ORTHO05D009352 9.5e-100 367.9 344 56.4
Medtr1g102880 Medicago truncatula HOM05D007297 ORTHO05D009352 9.5e-100 367.9 312 59.3
Lsat_1_v5_gn_8_120880 Lactuca sativa HOM05D007297 ORTHO05D009352 2.1e-99 366.7 298 60.4
MSTRG.27611 Avicennia marina HOM05D007297 ORTHO05D009352 2.0e-97 360.1 374 53.2
PGSC0003DMG400016829 Solanum tuberosum HOM05D007297 ORTHO05D009352 2.0e-97 360.1 333 53.2
arahy.Tifrunner.gnm1.ann1.F5MDAV Arachis hypogaea HOM05D007297 ORTHO05D009352 2.6e-97 359.8 386 52.6
Sopen10g027070 Solanum pennellii HOM05D007297 ORTHO05D009352 2.6e-97 359.8 339 53.1
Solyc10g074580.2 Solanum lycopersicum HOM05D007297 ORTHO05D009352 4.4e-97 359.0 341 53.1
Ah.01g017630 Amaranthus hybridus HOM05D007297 ORTHO05D009352 4.9e-96 355.5 292 59.6
Thhalv10025549m.g Eutrema salsugineum HOM05D007297 ORTHO05D009352 4.9e-96 355.5 346 51.4
THA.LOC104804081 Tarenaya hassleriana HOM05D007297 ORTHO05D009352 5.4e-95 352.1 305 58.0
Sp7g37510 Schrenkiella parvula HOM05D007297 ORTHO05D009352 6.6e-93 345.1 320 52.8
AL7G10130 Arabidopsis lyrata HOM05D002051 ORTHO05D002041 8.7e-93 344.7 296 55.7
Peaxi162Scf00374g00734 Petunia axillaris HOM05D007297 ORTHO05D009352 1.1e-92 344.4 328 53.7
Carub.0007s0016 Capsella rubella HOM05D007297 ORTHO05D009352 1.5e-92 344.0 355 49.6
Nitab4.5_0001700g0150 Nicotiana tabacum HOM05D007297 ORTHO05D009352 2.5e-92 343.2 370 50.3
ATR0807G066 Amborella trichopoda HOM05D007297 ORTHO05D009352 4.3e-92 342.4 305 56.4
SalBow5G1065 Salvia bowleyana HOM05D007297 ORTHO05D009352 4.3e-92 342.4 330 55.5
Cc09_g10870 Coffea canephora HOM05D007297 ORTHO05D009352 3.6e-91 339.3 397 48.1
AT4G38225 Arabidopsis thaliana HOM05D007297 ORTHO05D009352 8.1e-91 338.2 362 49.4
SalBow5G0092 Salvia bowleyana HOM05D007297 ORTHO05D009352 8.1e-91 338.2 329 55.3
Actinidia32005 Actinidia chinensis HOM05D007297 ORTHO05D009352 2.6e-89 333.2 310 55.2
CARHR294010 Cardamine hirsuta HOM05D007297 ORTHO05D009352 4.4e-89 332.4 307 54.1
unitig_26.g9984 Utricularia gibba HOM05D007297 ORTHO05D009352 4.9e-88 328.9 306 57.2
BraA06t23859Z Brassica rapa HOM05D007027 ORTHO05D008765 1.6e-86 323.9 290 54.5
C05p07890 Brassica napus HOM05D007027 ORTHO05D008765 2.1e-86 323.6 293 54.6
BolC5t29540H Brassica oleracea HOM05D007027 ORTHO05D008765 2.1e-86 323.6 293 54.6
Cpa.g.sc60.2 Carica papaya HOM05D007297 ORTHO05D009352 2.7e-86 323.2 242 62.8
A06p06480 Brassica napus HOM05D007027 ORTHO05D008765 4.6e-86 322.4 291 54.6
Lj9A408T85 Lonicera japonica HOM05D007297 ORTHO05D009352 8.7e-85 318.2 236 62.3
SGA_v2.0_scaffold98G29306 Striga asiatica HOM05D007297 ORTHO05D009352 1.5e-84 317.4 385 48.1
CSS0007337 Camellia sinensis var. sinensis HOM05D007297 ORTHO05D009352 4.8e-83 312.4 249 61.8
Aa31LG6G16890 Aethionema arabicum HOM05D007297 ORTHO05D009352 3.1e-82 309.7 275 55.3
CDE05G3233 Ceratophyllum demersum HOM05D007297 ORTHO05D009352 5.6e-76 288.9 245 57.1
HPP92_012647 Vanilla planifolia HOM05D007297 ORTHO05D009352 4.8e-75 285.8 294 47.3
Zm00001eb002190 Zea mays HOM05D007297 ORTHO05D009352 5.1e-69 265.8 372 42.2
Os03g0128800 Oryza sativa ssp. japonica HOM05D007297 ORTHO05D009352 1.9e-68 263.8 350 43.4
Mapoly0005s0259 Marchantia polymorpha HOM05D007297 ORTHO05D009352 1.6e-59 234.2 311 40.8
AagrBONN_evm.TU.Sc2ySwM_117.3353 Anthoceros agrestis HOM05D007297 ORTHO05D009352 1.0e-56 224.9 326 42.6
Atru.chr5.3567 Acer truncatum HOM05D007297 ORTHO05D009352 6.5e-56 222.2 163 64.4
Pp3c17_19510 Physcomitrium patens HOM05D007297 ORTHO05D009352 1.8e-53 214.2 315 40.3
Hma1.2p1_0271F.1_g108750 Hydrangea macrophylla HOM05D007297 ORTHO05D009352 3.7e-51 206.5 158 60.8
Hma1.2p1_1276F.1_g272150 Hydrangea macrophylla HOM05D007297 ORTHO05D009352 3.3e-44 183.3 169 53.3
CBR_g49409 Chara braunii HOM05D001007 ORTHO05D008005 2.8e-43 180.3 440 31.6
Pp3c2_4700 Physcomitrium patens HOM05D007297 ORTHO05D009352 6.5e-40 169.1 294 36.4
SMO356G0187 Selaginella moellendorffii HOM05D007297 ORTHO05D009352 9.7e-36 155.2 304 32.6
MD11G1100600 Malus domestica HOM05D007297 ORTHO05D009352 1.6e-33 147.9 88 78.4
Cpa.g.sc2396.1 Carica papaya HOM05D007297 ORTHO05D009352 1.3e-32 144.8 102 65.7
AL7G47220 Arabidopsis lyrata HOM05D007297 ORTHO05D009352 2.5e-31 140.6 204 41.2
Hma1.2p1_1819F.1_g304100 Hydrangea macrophylla HOM05D007297 ORTHO05D009352 2.5e-31 140.6 126 54.8
Hma1.2p1_0367F.1_g137160 Hydrangea macrophylla HOM05D007297 ORTHO05D009352 4.7e-22 109.8 82 58.5
Cre12.g554600 Chlamydomonas reinhardtii HOM05D007297 ORTHO05D009352 1.4e-21 108.2 290 28.3
Hma1.2p1_0422F.1_g150110 Hydrangea macrophylla HOM05D007297 ORTHO05D009352 2.3e-21 107.5 129 45.7
MCO13G078 Micromonas commoda HOM05D007297 ORTHO05D009352 7.2e-15 85.9 303 25.4


User provided reference genes

Program Settings