Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g16811 Fragaria vesca HOM05D019778 ORTHO05D025468 1.9e-92 342.4 165 100.0
FAN24G2184 Fragaria x ananassa HOM05D019778 ORTHO05D025468 1.3e-53 213.4 103 100.0
FAN22G2207 Fragaria x ananassa HOM05D001801 ORTHO05D001739 3.5e-14 82.4 133 42.9
RcHm_v2.0_Chr5g0071851 Rosa chinensis HOM05D019778 ORTHO05D025468 6.0e-14 81.6 102 44.1
FAN02G0385 Fragaria x ananassa HOM05D019778 ORTHO05D025468 1.3e-13 80.5 105 43.8
FAN12G3699 Fragaria x ananassa HOM05D000256 ORTHO05D000119 5.1e-13 78.6 144 38.9
FvH4_4g05620 Fragaria vesca HOM05D000256 ORTHO05D000119 1.5e-12 77.0 113 41.6
FAN05G2855 Fragaria x ananassa HOM05D019778 ORTHO05D025468 5.6e-12 75.1 99 44.4
ATR0693G139 Amborella trichopoda HOM05D000256 ORTHO05D000119 6.2e-11 71.6 102 36.3
RcHm_v2.0_Chr4g0396791 Rosa chinensis HOM05D000256 ORTHO05D000119 6.2e-11 71.6 111 36.0
CSS0050460 Camellia sinensis var. sinensis HOM05D000256 ORTHO05D000119 3.1e-10 69.3 101 38.6
Phvul.008G062800 Phaseolus vulgaris HOM05D000256 ORTHO05D000119 5.3e-10 68.6 106 38.7
Prupe.1G058100 Prunus persica HOM05D000256 ORTHO05D000119 5.3e-10 68.6 114 40.4
Manes.09G044300 Manihot esculenta HOM05D000256 ORTHO05D000119 1.2e-09 67.4 123 35.0
CiPaw.13G128600 Carya illinoinensis HOM05D000256 ORTHO05D000119 2.0e-09 66.6 103 36.9
COL.COLO4_10970 Corchorus olitorius HOM05D000256 ORTHO05D000119 3.4e-09 65.9 106 35.8
Thecc.04G213300 Theobroma cacao HOM05D000256 ORTHO05D000119 4.5e-09 65.5 87 42.5
MD09G1134100 Malus domestica HOM05D000256 ORTHO05D000119 1.0e-08 64.3 99 37.4
TAR633G2095 Trochodendron aralioides HOM05D000256 ORTHO05D000119 2.9e-08 62.8 106 33.0
MBI18_g28934_MAGBIO Magnolia biondii HOM05D000256 ORTHO05D000119 3.8e-08 62.4 107 31.8
Aqoxy5G00764 Aquilegia oxysepala HOM05D000256 ORTHO05D000119 4.9e-08 62.0 109 33.9
VMungo0420G0002 Vigna mungo HOM05D000256 ORTHO05D000119 8.4e-08 61.2 108 35.2
TAR633G1870 Trochodendron aralioides HOM05D000256 ORTHO05D000119 1.1e-07 60.8 105 33.3
Prupe.1G026600 Prunus persica HOM05D000256 ORTHO05D000119 1.4e-07 60.5 112 34.8
TPR.G19335 Trifolium pratense HOM05D000256 ORTHO05D000119 1.4e-07 60.5 106 38.7
Potri.018G148630 Populus trichocarpa HOM05D000256 ORTHO05D000119 1.9e-07 60.1 108 33.3
Medtr4g123577 Medicago truncatula HOM05D000256 ORTHO05D000119 2.5e-07 59.7 105 34.3
PSO170G1809 Papaver somniferum HOM05D000256 ORTHO05D000119 2.5e-07 59.7 105 30.5
TPR.G23409 Trifolium pratense HOM05D000256 ORTHO05D000119 2.5e-07 59.7 97 40.2
TPR.G8259 Trifolium pratense HOM05D000256 ORTHO05D000119 2.5e-07 59.7 112 33.0
MD17G1052600 Malus domestica HOM05D000256 ORTHO05D000119 3.2e-07 59.3 106 36.8
MD06G1007700 Malus domestica HOM05D000256 ORTHO05D000119 4.2e-07 58.9 105 29.5
Manes.03G153250 Manihot esculenta HOM05D000256 ORTHO05D000119 4.2e-07 58.9 75 38.7
Manes.03G153500 Manihot esculenta HOM05D000256 ORTHO05D000119 5.5e-07 58.5 98 35.7
Manes.03G153600 Manihot esculenta HOM05D000256 ORTHO05D000119 5.5e-07 58.5 75 40.0
Manes.03G154200 Manihot esculenta HOM05D000256 ORTHO05D000119 5.5e-07 58.5 75 38.7
Phvul.008G131900 Phaseolus vulgaris HOM05D000256 ORTHO05D000119 5.5e-07 58.5 105 33.3
TPR.G23404 Trifolium pratense HOM05D000256 ORTHO05D000119 5.5e-07 58.5 116 36.2
MD07G1270000 Malus domestica HOM05D000256 ORTHO05D000119 7.1e-07 58.2 121 35.5
Manes.03G153351 Manihot esculenta HOM05D000256 ORTHO05D000119 7.1e-07 58.2 75 40.0
Nn6g34635 Nelumbo nucifera HOM05D000256 ORTHO05D000119 7.1e-07 58.2 110 32.7
RcHm_v2.0_Chr3g0496401 Rosa chinensis HOM05D000256 ORTHO05D000119 7.1e-07 58.2 112 31.2
TAR623G1279 Trochodendron aralioides HOM05D000256 ORTHO05D000119 7.1e-07 58.2 107 36.4
FvH4_4g05610 Fragaria vesca HOM05D000256 ORTHO05D000119 9.3e-07 57.8 119 31.1
MD14G1004300 Malus domestica HOM05D000256 ORTHO05D000119 1.2e-06 57.4 102 38.2
Nn1g08741 Nelumbo nucifera HOM05D000256 ORTHO05D000119 1.2e-06 57.4 88 35.2
Nn1g08742 Nelumbo nucifera HOM05D000256 ORTHO05D000119 1.2e-06 57.4 88 35.2
Phvul.003G123700 Phaseolus vulgaris HOM05D000256 ORTHO05D000119 1.2e-06 57.4 95 33.7
Prupe.1G055600 Prunus persica HOM05D000256 ORTHO05D000119 1.2e-06 57.4 118 37.3
Nn1g08743 Nelumbo nucifera HOM05D000256 ORTHO05D000119 1.6e-06 57.0 88 35.2
TWI77G1024 Tripterygium wilfordii HOM05D000256 ORTHO05D000119 1.6e-06 57.0 101 36.6
TWI81G0897 Tripterygium wilfordii HOM05D000256 ORTHO05D000119 1.6e-06 57.0 84 33.3
CSS0039783 Camellia sinensis var. sinensis HOM05D000256 ORTHO05D000119 2.1e-06 56.6 83 38.6
Ciclev10007065m.g Citrus clementina HOM05D000256 ORTHO05D000119 2.1e-06 56.6 139 28.1
Manes.03G153800 Manihot esculenta HOM05D000256 ORTHO05D000119 2.1e-06 56.6 75 40.0
PSO675G3034 Papaver somniferum HOM05D000256 ORTHO05D000119 2.1e-06 56.6 103 29.1
FAN12G4246 Fragaria x ananassa HOM05D000256 ORTHO05D000119 2.7e-06 56.2 119 31.1
Lalb_Chr11g0072391 Lupinus albus HOM05D000256 ORTHO05D000119 2.7e-06 56.2 96 35.4
Nn1g08720 Nelumbo nucifera HOM05D000256 ORTHO05D000119 2.7e-06 56.2 108 33.3
Phvul.008G063900 Phaseolus vulgaris HOM05D000256 ORTHO05D000119 2.7e-06 56.2 87 33.3
Sabra18G0122800 Salix brachista HOM05D000256 ORTHO05D000119 2.7e-06 56.2 85 37.6
TPR.G32106 Trifolium pratense HOM05D000256 ORTHO05D000119 2.7e-06 56.2 97 34.0
Ciclev10006461m.g Citrus clementina HOM05D000256 ORTHO05D000119 3.5e-06 55.8 93 37.6
Manes.03G153400 Manihot esculenta HOM05D000256 ORTHO05D000119 3.5e-06 55.8 75 37.3
Nn1g08719 Nelumbo nucifera HOM05D000256 ORTHO05D000119 3.5e-06 55.8 88 34.1
VMungo1383G2815 Vigna mungo HOM05D000256 ORTHO05D000119 3.5e-06 55.8 99 34.3
GSVIVG01014873001 Vitis vinifera HOM05D000256 ORTHO05D000119 3.5e-06 55.8 109 33.0
Manes.03G154100 Manihot esculenta HOM05D000256 ORTHO05D000119 4.6e-06 55.5 103 33.0
PGR044G1630 Punica granatum HOM05D000256 ORTHO05D000119 4.6e-06 55.5 84 35.7
RcHm_v2.0_Chr4g0396781 Rosa chinensis HOM05D019778 ORTHO05D000119 4.6e-06 55.5 76 42.1
Cc04_g12610 Coffea canephora HOM05D000256 ORTHO05D000119 6.0e-06 55.1 100 37.0
Manes.03G154300 Manihot esculenta HOM05D000256 ORTHO05D000119 6.0e-06 55.1 94 33.0
Medtr1g058500 Medicago truncatula HOM05D000256 ORTHO05D000119 6.0e-06 55.1 84 34.5
Phvul.008G063400 Phaseolus vulgaris HOM05D000256 ORTHO05D000119 6.0e-06 55.1 82 30.5
TPR.G23411 Trifolium pratense HOM05D000256 ORTHO05D000119 6.0e-06 55.1 106 34.9
VMungo0464G1412 Vigna mungo HOM05D000256 ORTHO05D000119 6.0e-06 55.1 82 37.8
Manes.03G153950 Manihot esculenta HOM05D000256 ORTHO05D000119 7.9e-06 54.7 75 40.0
Phvul.008G064300 Phaseolus vulgaris HOM05D000256 ORTHO05D000119 7.9e-06 54.7 82 30.5
PGR042G0022 Punica granatum HOM05D000256 ORTHO05D000119 7.9e-06 54.7 101 34.7
PGR042G0549 Punica granatum HOM05D000256 ORTHO05D000119 7.9e-06 54.7 101 34.7
PGR042G0996 Punica granatum HOM05D000256 ORTHO05D000119 7.9e-06 54.7 101 34.7
PGR042G1053 Punica granatum HOM05D000256 ORTHO05D000119 7.9e-06 54.7 101 34.7
PGR042G1377 Punica granatum HOM05D000256 ORTHO05D000119 7.9e-06 54.7 101 34.7
PGR042G1542 Punica granatum HOM05D000256 ORTHO05D000119 7.9e-06 54.7 101 34.7
PGR042G1949 Punica granatum HOM05D000256 ORTHO05D000119 7.9e-06 54.7 101 34.7
PGR042G2280 Punica granatum HOM05D000256 ORTHO05D000119 7.9e-06 54.7 101 34.7
PGR042G2642 Punica granatum HOM05D000256 ORTHO05D000119 7.9e-06 54.7 101 34.7
PGR042G3183 Punica granatum HOM05D000256 ORTHO05D000119 7.9e-06 54.7 101 34.7
PGR042G3343 Punica granatum HOM05D000256 ORTHO05D000119 7.9e-06 54.7 101 34.7
PGR042G3721 Punica granatum HOM05D000256 ORTHO05D000119 7.9e-06 54.7 101 34.7
RcHm_v2.0_Chr6g0268511 Rosa chinensis HOM05D000256 ORTHO05D000119 7.9e-06 54.7 109 32.1


User provided reference genes

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