Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g16640 Fragaria vesca HOM05D007101 ORTHO05D008632 3.9e-205 719.2 872 100.0
FAN15G1235 Fragaria x ananassa HOM05D007101 ORTHO05D008632 2.9e-192 676.4 872 97.1
RcHm_v2.0_Chr6g0280761 Rosa chinensis HOM05D007101 ORTHO05D008632 3.1e-170 603.2 874 85.8
FAN24G2347 Fragaria x ananassa HOM05D007101 ORTHO05D008632 1.3e-144 518.1 872 89.9
Prupe.8G178500 Prunus persica HOM05D007101 ORTHO05D008632 2.5e-135 487.3 877 86.4
MD10G1139700 Malus domestica HOM05D007101 ORTHO05D008632 2.4e-130 470.7 875 85.3
QL11p055950 Quercus lobata HOM05D007101 ORTHO05D008632 9.0e-109 399.1 869 82.2
CiPaw.06G116300 Carya illinoinensis HOM05D007101 ORTHO05D008632 7.6e-108 396.0 870 78.6
Haze_02013 Corylus avellana HOM05D007101 ORTHO05D008632 5.1e-104 383.3 871 81.1
TWI15G0633 Tripterygium wilfordii HOM05D007101 ORTHO05D008632 8.7e-104 382.5 870 77.6
Cfa005353 Carpinus fangiana HOM05D007101 ORTHO05D008632 6.9e-101 372.9 872 74.3
CSS0049741 Camellia sinensis var. sinensis HOM05D007101 ORTHO05D008632 1.5e-100 371.7 865 74.9
GSVIVG01023885001 Vitis vinifera HOM05D007101 ORTHO05D008632 1.5e-100 371.7 868 79.4
Sabra04G0138800 Salix brachista HOM05D007101 ORTHO05D008632 7.7e-100 369.4 871 79.8
TAR376G1071 Trochodendron aralioides HOM05D007101 ORTHO05D008632 1.0e-99 369.0 870 76.4
COL.COLO4_17930 Corchorus olitorius HOM05D007101 ORTHO05D008632 6.5e-99 366.3 867 73.0
Duzib132G1059 Durio zibethinus HOM05D007101 ORTHO05D008632 5.5e-98 363.2 872 75.1
Manes.11G110800 Manihot esculenta HOM05D007101 ORTHO05D008632 7.2e-98 362.8 875 79.2
Potri.004G205600 Populus trichocarpa HOM05D007101 ORTHO05D008632 1.6e-97 361.7 867 79.9
ClCG02G003480 Citrullus lanatus HOM05D007101 ORTHO05D008632 9.7e-95 352.4 869 76.2
Dinv41876 Davidia involucrata HOM05D007101 ORTHO05D008632 1.3e-94 352.1 869 68.4
Eucgr.I01520 Eucalyptus grandis HOM05D007101 ORTHO05D008632 6.1e-89 333.2 874 74.7
Actinidia17999 Actinidia chinensis HOM05D007101 ORTHO05D008632 1.3e-86 325.5 864 76.4
Sed0027220 Sechium edule HOM05D007101 ORTHO05D008632 3.1e-85 320.9 868 68.1
Cpa.g.sc20.207 Carica papaya HOM05D007101 ORTHO05D008632 1.2e-84 318.9 872 71.7
MELO3C013256.2 Cucumis melo HOM05D007101 ORTHO05D008632 1.2e-84 318.9 861 71.3
Aqoxy6G01656 Aquilegia oxysepala HOM05D007101 ORTHO05D008632 1.7e-83 315.1 873 71.6
Phvul.002G220400 Phaseolus vulgaris HOM05D007101 ORTHO05D008632 3.8e-83 313.9 869 66.3
arahy.Tifrunner.gnm1.ann1.RGU3X9 Arachis hypogaea HOM05D007101 ORTHO05D008632 1.1e-82 312.4 868 67.7
Glyma.08G060600 Glycine max HOM05D007101 ORTHO05D008632 1.9e-82 311.6 860 68.0
AL3G49990 Arabidopsis lyrata HOM05D007101 ORTHO05D008632 3.2e-82 310.8 869 76.4
arahy.Tifrunner.gnm1.ann1.RR3D2P Arachis hypogaea HOM05D007101 ORTHO05D008632 3.2e-82 310.8 868 71.4
THA.LOC104819686 Tarenaya hassleriana HOM05D007101 ORTHO05D008632 9.4e-82 309.3 868 73.3
PGR142G0716 Punica granatum HOM05D007101 ORTHO05D008632 2.7e-81 307.8 873 73.7
C07p06350 Brassica napus HOM05D007101 ORTHO05D008632 3.6e-81 307.4 871 75.8
CsaV3_7G001820 Cucumis sativus L. HOM05D007101 ORTHO05D008632 3.6e-81 307.4 863 70.7
VMungo0251G0107 Vigna mungo HOM05D007101 ORTHO05D008632 6.1e-81 306.6 868 62.7
Lj4g0005302 Lotus japonicus HOM05D007101 ORTHO05D008632 1.4e-80 305.4 870 68.0
Rhsim01G0003500 Rhododendron simsii HOM05D007101 ORTHO05D008632 3.9e-80 303.9 867 74.2
Ca_18469_v3 Cicer arietinum L. HOM05D007101 ORTHO05D008632 1.1e-79 302.4 867 68.6
Ca_30070_v3 Cicer arietinum L. HOM05D007101 ORTHO05D008632 1.1e-79 302.4 867 68.6
Aa31LG8G14540 Aethionema arabicum HOM05D007101 ORTHO05D008632 1.3e-78 298.9 871 75.5
Thhalv10022542m.g Eutrema salsugineum HOM05D007101 ORTHO05D008632 2.8e-78 297.7 865 76.1
Gorai.012G159300 Gossypium raimondii HOM05D007101 ORTHO05D008632 1.8e-77 295.0 872 72.5
BcaB03g16462 Brassica carinata HOM05D007101 ORTHO05D008632 2.4e-77 294.7 867 76.1
Gohir.D04G170700 Gossypium hirsutum HOM05D007101 ORTHO05D008632 2.4e-77 294.7 872 72.6
Thecc.02G044400 Theobroma cacao HOM05D007101 ORTHO05D008632 2.6e-76 291.2 873 72.4
BcaC06g36224 Brassica carinata HOM05D007101 ORTHO05D008632 2.2e-75 288.1 871 75.3
Gohir.A04G125700 Gossypium hirsutum HOM05D007101 ORTHO05D008632 2.2e-75 288.1 872 72.1
A07p03990 Brassica napus HOM05D007101 ORTHO05D008632 2.5e-74 284.6 871 75.0
BraA07t28190Z Brassica rapa HOM05D007101 ORTHO05D008632 2.5e-74 284.6 871 74.9
Lalb_Chr05g0218081 Lupinus albus HOM05D007101 ORTHO05D008632 2.5e-74 284.6 868 64.6
BolC7t41051H Brassica oleracea HOM05D007101 ORTHO05D008632 4.2e-74 283.9 869 75.3
Sc14g0002450 Simmondsia chinensis HOM05D007101 ORTHO05D008632 5.5e-74 283.5 867 70.0
CARHR293460 Cardamine hirsuta HOM05D007101 ORTHO05D008632 3.6e-73 280.8 868 75.3
Peaxi162Scf00818g00019 Petunia axillaris HOM05D007101 ORTHO05D008632 1.8e-72 278.5 868 72.8
Cc03_g11620 Coffea canephora HOM05D007101 ORTHO05D008632 8.8e-72 276.2 438 60.3
TPR.G15380 Trifolium pratense HOM05D007101 ORTHO05D008632 1.2e-71 275.8 873 66.9
EL10Ac9g21242 Beta vulgaris HOM05D007101 ORTHO05D008632 5.7e-71 273.5 874 74.5
AT2G17140 Arabidopsis thaliana HOM05D007101 ORTHO05D008632 7.5e-71 273.1 871 75.1
vmacro02332 Vaccinium macrocarpon HOM05D007101 ORTHO05D008632 7.5e-71 273.1 890 69.8
CAN.G157.9 Capsicum annuum HOM05D007101 ORTHO05D008632 1.1e-69 269.2 867 75.0
Ciclev10027787m.g Citrus clementina HOM05D007101 ORTHO05D008632 1.1e-69 269.2 868 71.1
Hund06163 Selenicereus undatus HOM05D007101 ORTHO05D008632 2.7e-68 264.6 872 74.2
SalBow1G7566 Salvia bowleyana HOM05D007101 ORTHO05D008632 5.0e-67 260.4 379 70.4
SGA_v2.0_scaffold32G13346 Striga asiatica HOM05D007101 ORTHO05D008632 6.5e-67 260.0 868 71.1
Ah.01g023750 Amaranthus hybridus HOM05D000564 ORTHO05D002780 1.9e-66 258.5 856 68.5
PGSC0003DMG400019836 Solanum tuberosum HOM05D007101 ORTHO05D008632 1.6e-65 255.4 365 71.8
TAR629G2938 Trochodendron aralioides HOM05D007101 ORTHO05D008632 2.7e-65 254.6 199 63.3
Atru.chr5.3546 Acer truncatum HOM05D007101 ORTHO05D008632 6.8e-64 250.0 782 79.5
Lj9A406T59 Lonicera japonica HOM05D007101 ORTHO05D008632 6.8e-64 250.0 865 75.0
Migut.B00010 Erythranthe guttata HOM05D007101 ORTHO05D008632 9.8e-63 246.1 374 69.8
arahy.Tifrunner.gnm1.ann1.X169V3 Arachis hypogaea HOM05D007101 ORTHO05D008632 1.7e-62 245.4 361 69.8
Solyc02g021020.4 Solanum lycopersicum HOM05D007101 ORTHO05D008632 2.2e-62 245.0 367 70.3
Sopen02g005320 Solanum pennellii HOM05D007101 ORTHO05D008632 1.1e-61 242.7 365 70.4
MSTRG.17820 Avicennia marina HOM05D007101 ORTHO05D008632 5.4e-61 240.4 371 69.0
Carub.0003s3107 Capsella rubella HOM05D007101 ORTHO05D008632 5.9e-60 236.9 871 72.6
Nitab4.5_0000526g0060 Nicotiana tabacum HOM05D007101 ORTHO05D008632 3.8e-59 234.2 832 73.4
Nitab4.5_0006710g0010 Nicotiana tabacum HOM05D007101 ORTHO05D008632 5.5e-58 230.3 832 73.2
Oeu059796.1 Olea europaea HOM05D007101 ORTHO05D008632 1.4e-56 225.7 192 57.8
AUR62012916 Chenopodium quinoa HOM05D007101 ORTHO05D008632 1.8e-56 225.3 384 66.1
AUR62027126 Chenopodium quinoa HOM05D007101 ORTHO05D008632 1.8e-56 225.3 803 73.5
DCAR_015659 Daucus carota HOM05D000046 ORTHO05D008632 1.3e-51 209.1 871 69.1
ECA233G4336 Erigeron canadensis HOM05D000046 ORTHO05D014757 2.9e-51 208.0 377 63.4
Rhsim11G0197400 Rhododendron simsii HOM05D007101 ORTHO05D008632 8.0e-49 199.9 411 51.6
SHI10554 Sapria himalayana HOM05D007101 ORTHO05D008632 2.3e-48 198.4 833 68.1
Nn1g05331 Nelumbo nucifera HOM05D007101 ORTHO05D008632 1.7e-46 192.2 877 65.9
Medtr4g091600 Medicago truncatula HOM05D007101 ORTHO05D008632 8.3e-46 189.9 876 61.6
PSO675G0367 Papaver somniferum HOM05D007101 ORTHO05D008632 7.0e-45 186.8 884 68.1
Lsat_1_v5_gn_8_121281 Lactuca sativa HOM05D007101 ORTHO05D008632 1.5e-42 179.1 179 48.0
HanXRQChr12g0374451 Helianthus annuus HOM05D007101 ORTHO05D008632 1.5e-39 169.1 177 47.5
Sp3g30480 Schrenkiella parvula HOM05D007101 ORTHO05D008632 1.7e-38 165.6 742 79.6
Os02g0132100 Oryza sativa ssp. japonica HOM05D007101 ORTHO05D008632 8.3e-38 163.3 366 60.1
HPP92_025842 Vanilla planifolia HOM05D007101 ORTHO05D008632 9.2e-37 159.8 381 59.1
MD05G1134600 Malus domestica HOM05D007101 ORTHO05D008632 1.6e-36 159.1 324 68.2
MBI06_g35039_MAGBIO Magnolia biondii HOM05D007101 ORTHO05D008632 3.5e-36 157.9 885 54.1
Zm00001eb209030 Zea mays HOM05D007101 ORTHO05D008632 1.1e-32 146.4 368 60.1
MD05G1134700 Malus domestica HOM05D007101 ORTHO05D008632 8.3e-30 136.7 94 70.2
unitig_32.g11014 Utricularia gibba HOM05D007101 ORTHO05D008632 5.4e-29 134.0 177 39.5
Glyma.07G188700 Glycine max HOM05D007101 ORTHO05D008632 2.7e-28 131.7 190 40.0
CDE04G2490 Ceratophyllum demersum HOM05D007101 ORTHO05D008632 5.2e-24 117.5 145 42.8
Gorai.008G096400 Gossypium raimondii HOM05D007101 ORTHO05D008632 3.4e-23 114.8 140 41.4
ATR0618G240 Amborella trichopoda HOM05D007101 ORTHO05D008632 1.7e-22 112.5 397 53.4
TAR629G1847 Trochodendron aralioides HOM05D007101 ORTHO05D008632 1.6e-20 105.9 148 45.9
VMungo0251G1721 Vigna mungo HOM05D007101 ORTHO05D008632 1.5e-18 99.4 98 50.0
THA.LOC104807397 Tarenaya hassleriana HOM05D007101 ORTHO05D008632 2.1e-12 79.0 113 42.5
Gohir.D06G112750 Gossypium hirsutum HOM05D007101 ORTHO05D019476 2.5e-10 72.0 64 53.1
SEGI_20674 Sequoiadendron giganteum HOM05D007101 ORTHO05D008632 6.4e-06 57.4 71 42.3


User provided reference genes

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