Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g15600 Fragaria vesca HOM05D000267 ORTHO05D009944 0.0e+00 1101.3 544 100.0
FAN24G1303 Fragaria x ananassa HOM05D000267 ORTHO05D009944 8.2e-302 1039.6 638 83.9
FAN20G0365 Fragaria x ananassa HOM05D000267 ORTHO05D009944 1.2e-300 1035.8 544 94.7
FAN27G0796 Fragaria x ananassa HOM05D000267 ORTHO05D009944 1.0e-275 953.0 598 83.4
FAN15G3022 Fragaria x ananassa HOM05D000267 ORTHO05D009944 1.3e-267 926.0 561 86.5
Prupe.8G168300 Prunus persica HOM05D000267 ORTHO05D009944 1.5e-255 885.9 546 81.3
MD05G1124600 Malus domestica HOM05D000267 ORTHO05D009944 3.8e-238 828.2 551 76.6
QL11p051524 Quercus lobata HOM05D000267 ORTHO05D009944 5.6e-218 761.1 496 74.0
CSS0022193 Camellia sinensis var. sinensis HOM05D000267 ORTHO05D009944 4.5e-215 751.5 551 68.2
TAR628G1652 Trochodendron aralioides HOM05D000267 ORTHO05D009944 5.8e-215 751.1 501 73.1
CiPaw.05G084800 Carya illinoinensis HOM05D000267 ORTHO05D009944 8.4e-214 747.3 523 71.3
Thecc.02G056000 Theobroma cacao HOM05D000267 ORTHO05D009944 2.1e-212 742.7 496 74.4
Gorai.008G037400 Gossypium raimondii HOM05D000267 ORTHO05D009944 7.4e-210 734.2 484 73.8
TWI79G0018 Tripterygium wilfordii HOM05D000267 ORTHO05D009944 1.3e-209 733.4 545 66.6
Cfa005283 Carpinus fangiana HOM05D000267 ORTHO05D002764 8.2e-209 730.7 482 74.9
GSVIVG01023990001 Vitis vinifera HOM05D000267 ORTHO05D009944 1.5e-207 726.5 498 72.5
Gohir.D12G036200 Gossypium hirsutum HOM05D000267 ORTHO05D009944 2.6e-207 725.7 485 73.2
CsaV3_2G016240 Cucumis sativus L. HOM05D000267 ORTHO05D009944 2.9e-206 722.2 492 70.3
Rhsim11G0193400 Rhododendron simsii HOM05D000267 ORTHO05D009944 5.5e-205 718.0 577 64.3
ClCG02G012080 Citrullus lanatus HOM05D000267 ORTHO05D009944 9.3e-205 717.2 492 69.7
Actinidia18043 Actinidia chinensis HOM05D000267 ORTHO05D002764 1.2e-204 716.8 490 72.0
Manes.11G097600 Manihot esculenta HOM05D000267 ORTHO05D009944 3.0e-203 712.2 546 66.1
Duzib132G0985 Durio zibethinus HOM05D000267 ORTHO05D009944 4.3e-202 708.4 485 72.0
THA.LOC104807804 Tarenaya hassleriana HOM05D000267 ORTHO05D009944 6.9e-200 701.0 493 68.0
COL.COLO4_17372 Corchorus olitorius HOM05D000267 ORTHO05D009944 5.9e-199 698.0 489 71.4
Potri.004G177400 Populus trichocarpa HOM05D000267 ORTHO05D009944 1.3e-198 696.8 545 64.2
Atru.chr5.3400 Acer truncatum HOM05D000267 ORTHO05D009944 2.9e-198 695.7 546 65.8
EL10Ac9g21344 Beta vulgaris HOM05D000267 ORTHO05D009944 3.8e-198 695.3 500 67.8
Migut.B00061 Erythranthe guttata HOM05D000267 ORTHO05D009944 8.5e-198 694.1 491 66.6
Sc14g0002320 Simmondsia chinensis HOM05D000267 ORTHO05D009944 1.1e-197 693.7 485 68.5
AUR62010015 Chenopodium quinoa HOM05D000267 ORTHO05D009944 6.7e-195 684.5 494 67.8
AUR62013005 Chenopodium quinoa HOM05D000267 ORTHO05D009944 7.4e-194 681.0 542 63.3
vmacro02289 Vaccinium macrocarpon HOM05D000267 ORTHO05D009944 1.7e-193 679.9 453 72.8
MBI05_g00165_MAGBIO Magnolia biondii HOM05D000267 ORTHO05D009944 2.2e-193 679.5 497 67.6
Eucgr.I01454 Eucalyptus grandis HOM05D000267 ORTHO05D009944 6.3e-193 677.9 543 63.4
Cpa.g.sc20.108 Carica papaya HOM05D000267 ORTHO05D009944 1.2e-191 673.7 549 63.0
Dinv41920 Davidia involucrata HOM05D000267 ORTHO05D002764 3.4e-191 672.2 447 73.4
Cc09_g10270 Coffea canephora HOM05D000267 ORTHO05D009944 9.4e-189 664.1 495 66.9
Sed0004064 Sechium edule HOM05D000267 ORTHO05D009944 6.1e-188 661.4 492 66.3
AagrBONN_evm.TU.Sc2ySwM_344.2069 Anthoceros agrestis HOM05D000267 ORTHO05D009944 3.0e-187 659.1 530 60.4
CANSAT25G1222 Cannabis sativa HOM05D000267 ORTHO05D009944 3.9e-187 658.7 487 67.6
Hma1.2p1_0163F.1_g072670 Hydrangea macrophylla HOM05D000267 ORTHO05D009944 2.0e-186 656.4 438 73.1
ATR0661G537 Amborella trichopoda HOM05D000267 ORTHO05D009944 2.8e-185 652.5 527 61.7
AUR62015150 Chenopodium quinoa HOM05D000267 ORTHO05D009944 1.4e-181 640.2 494 65.0
Nitab4.5_0000079g0250 Nicotiana tabacum HOM05D000267 ORTHO05D000298 2.5e-181 639.4 501 63.5
MELO3C020832.2 Cucumis melo HOM05D000267 ORTHO05D009944 1.4e-179 633.6 503 63.0
Mapoly0001s0154 Marchantia polymorpha HOM05D000267 ORTHO05D009944 2.2e-177 626.3 521 59.3
Pp3c3_37260 Physcomitrium patens HOM05D000267 ORTHO05D009944 6.3e-177 624.8 498 60.0
Haze_02110 Corylus avellana HOM05D000267 ORTHO05D009944 1.3e-174 617.1 483 66.5
SMO367G0708 Selaginella moellendorffii HOM05D000267 ORTHO05D009944 1.7e-174 616.7 492 60.8
Gohir.A12G036400 Gossypium hirsutum HOM05D000267 ORTHO05D009944 1.6e-172 610.1 409 72.4
Nitab4.5_0007484g0010 Nicotiana tabacum HOM05D000267 ORTHO05D009944 6.7e-171 604.7 490 62.2
Os04g0560500 Oryza sativa ssp. japonica HOM05D000267 ORTHO05D009944 4.1e-168 595.5 555 52.6
RcHm_v2.0_Chr6g0278781 Rosa chinensis HOM05D000267 ORTHO05D009944 6.1e-164 581.6 325 89.2
Ciclev10028457m.g Citrus clementina HOM05D000267 ORTHO05D009944 3.0e-163 579.3 444 66.0
SalBow1G0833 Salvia bowleyana HOM05D000267 ORTHO05D009944 2.6e-162 576.2 442 62.7
Nn5g30837 Nelumbo nucifera HOM05D000267 ORTHO05D009944 3.7e-153 545.8 398 66.1
Zm00001eb074100 Zea mays HOM05D000267 ORTHO05D009944 2.4e-152 543.1 497 53.1
Oeu015554.3 Olea europaea HOM05D000267 ORTHO05D002764 2.3e-150 536.6 494 56.5
Atru.chr5.3388 Acer truncatum HOM05D000267 ORTHO05D009944 5.2e-131 472.2 430 58.6
Ah.01g023200 Amaranthus hybridus HOM05D000267 ORTHO05D009944 5.1e-126 455.7 449 53.0
RcHm_v2.0_Chr6g0255801 Rosa chinensis HOM05D000267 ORTHO05D009944 2.0e-114 417.2 273 80.2
Pp3c21_13310 Physcomitrium patens HOM05D000267 ORTHO05D009944 9.3e-112 408.3 574 41.1
RcHm_v2.0_Chr6g0278801 Rosa chinensis HOM05D000267 ORTHO05D009944 1.9e-96 357.5 189 92.1
Cre13.g587500 Chlamydomonas reinhardtii HOM05D000267 ORTHO05D009944 3.5e-95 353.2 514 40.7
Atru.chr5.3392 Acer truncatum HOM05D000267 ORTHO05D009944 4.0e-91 339.7 304 58.6
HPP92_001748 Vanilla planifolia HOM05D000267 ORTHO05D009944 1.2e-87 328.2 290 55.5
Cre17.g719500 Chlamydomonas reinhardtii HOM05D000267 ORTHO05D009944 1.6e-84 317.8 539 37.7
Hund06449 Selenicereus undatus HOM05D000267 ORTHO05D009944 6.1e-79 299.3 212 68.9
Actinidia20524 Actinidia chinensis HOM05D000267 ORTHO05D002764 1.1e-77 295.0 473 41.9
Peaxi162Scf00078g01332 Petunia axillaris HOM05D000267 ORTHO05D009944 6.5e-73 279.3 200 67.5
MCO05G576 Micromonas commoda HOM05D000267 ORTHO05D009944 4.1e-67 260.0 492 35.6
AagrBONN_evm.TU.Sc2ySwM_228.1198 Anthoceros agrestis HOM05D000267 ORTHO05D009944 3.5e-66 256.9 361 41.0
MCO05G735 Micromonas commoda HOM05D000267 ORTHO05D009944 4.4e-61 240.0 567 33.0
PRCOL_00001600 Prasinoderma coloniale HOM05D000267 ORTHO05D009944 2.2e-52 211.1 519 32.0
Peaxi162Scf00078g01331 Petunia axillaris HOM05D000267 ORTHO05D009944 1.0e-49 202.2 126 77.8
SEGI_17018 Sequoiadendron giganteum HOM05D000267 ORTHO05D009944 1.1e-43 182.2 201 47.8
SEGI_10216 Sequoiadendron giganteum HOM05D000267 ORTHO05D009944 1.0e-41 175.6 245 36.7
Sabra04G0119300 Salix brachista HOM05D000267 ORTHO05D009944 4.0e-38 163.7 188 46.8
RcHm_v2.0_Chr6g0255791 Rosa chinensis HOM05D000267 ORTHO05D009944 1.1e-32 145.6 88 77.3
HPP92_001749 Vanilla planifolia HOM05D000267 ORTHO05D009944 1.8e-30 138.3 85 74.1
Lj9A400T56 Lonicera japonica HOM05D000267 ORTHO05D009944 6.2e-23 113.2 74 73.0
CARHR111810 Cardamine hirsuta HOM05D000267 ORTHO05D009944 8.1e-23 112.8 90 57.8
RcHm_v2.0_Chr2g0123001 Rosa chinensis HOM05D000267 ORTHO05D009944 6.4e-20 103.2 70 72.9
Thecc.02G059600 Theobroma cacao HOM05D000267 ORTHO05D009944 1.4e-19 102.1 82 62.2
Cre12.g509650 Chlamydomonas reinhardtii HOM05D002360 ORTHO05D006971 3.0e-17 94.4 482 22.4
SEGI_00421 Sequoiadendron giganteum HOM05D000267 ORTHO05D009944 8.6e-17 92.8 175 32.0
PRCOL_00001058 Prasinoderma coloniale HOM05D002360 ORTHO05D006971 7.3e-16 89.7 468 23.7
SEGI_37732 Sequoiadendron giganteum HOM05D000267 ORTHO05D009944 3.7e-12 77.4 94 45.7
vmacro02288 Vaccinium macrocarpon HOM05D000267 ORTHO05D009944 2.4e-06 58.2 94 42.6


User provided reference genes

Program Settings