Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g15130 Fragaria vesca HOM05D007014 ORTHO05D008894 2.8e-85 318.5 159 100.0
FAN27G2134 Fragaria x ananassa HOM05D007014 ORTHO05D008894 4.2e-81 304.7 159 95.0
RcHm_v2.0_Chr6g0277731 Rosa chinensis HOM05D007014 ORTHO05D008894 1.1e-78 296.6 159 93.7
FAN15G2141 Fragaria x ananassa HOM05D007014 ORTHO05D008894 5.3e-76 287.7 152 94.1
FAN24G2354 Fragaria x ananassa HOM05D007014 ORTHO05D008894 3.6e-72 275.0 159 89.3
Prupe.3G155400 Prunus persica HOM05D007014 ORTHO05D008894 7.5e-70 267.3 158 82.9
MD09G1249800 Malus domestica HOM05D007014 ORTHO05D008894 1.3e-69 266.5 161 83.2
Haze_13147 Corylus avellana HOM05D007014 ORTHO05D008894 1.8e-63 246.1 159 75.5
QL08p038417 Quercus lobata HOM05D007014 ORTHO05D008894 1.8e-63 246.1 156 76.3
Cfa014594 Carpinus fangiana HOM05D007014 ORTHO05D008894 5.2e-63 244.6 159 74.8
CANSAT78G1474 Cannabis sativa HOM05D007014 ORTHO05D008894 6.8e-63 244.2 155 77.4
Dinv02170 Davidia involucrata HOM05D007014 ORTHO05D008894 4.4e-62 241.5 159 75.5
GSVIVG01030373001 Vitis vinifera HOM05D007014 ORTHO05D008894 4.4e-62 241.5 154 76.6
CSS0024097 Camellia sinensis var. sinensis HOM05D007014 ORTHO05D008894 1.1e-60 236.9 159 74.8
Hma1.2p1_1201F.1_g266700 Hydrangea macrophylla HOM05D007014 ORTHO05D008894 1.1e-60 236.9 150 76.0
Peaxi162Scf02133g00022 Petunia axillaris HOM05D007014 ORTHO05D008894 2.4e-60 235.7 156 74.4
Ca_28202_v3 Cicer arietinum L. HOM05D007014 ORTHO05D008894 4.1e-60 235.0 157 75.2
ClCG02G017580 Citrullus lanatus HOM05D007014 ORTHO05D008894 4.1e-60 235.0 155 71.6
TAR629G1268 Trochodendron aralioides HOM05D007014 ORTHO05D008894 1.2e-59 233.4 155 73.5
vmacro09278 Vaccinium macrocarpon HOM05D007014 ORTHO05D008894 1.6e-59 233.0 154 72.1
Oeu029922.1 Olea europaea HOM05D007014 ORTHO05D008894 2.7e-59 232.3 156 72.4
Nitab4.5_0003022g0100 Nicotiana tabacum HOM05D007014 ORTHO05D008894 3.5e-59 231.9 156 72.4
Manes.12G090900 Manihot esculenta HOM05D007014 ORTHO05D008894 5.9e-59 231.1 154 73.4
TWI36G0686 Tripterygium wilfordii HOM05D007014 ORTHO05D008894 7.7e-59 230.7 159 70.4
Potri.013G134102 Populus trichocarpa HOM05D007014 ORTHO05D008894 1.0e-58 230.3 159 72.3
Sabra13G0113800 Salix brachista HOM05D007014 ORTHO05D008894 1.0e-58 230.3 154 74.7
Potri.013G134000 Populus trichocarpa HOM05D007014 ORTHO05D008894 1.7e-58 229.6 159 72.3
SalBow1G7232 Salvia bowleyana HOM05D007014 ORTHO05D008894 1.7e-58 229.6 159 67.9
Medtr4g046047 Medicago truncatula HOM05D007014 ORTHO05D008894 2.3e-58 229.2 159 73.6
Rhsim04G0068000 Rhododendron simsii HOM05D007014 ORTHO05D008894 2.3e-58 229.2 156 70.5
PGSC0003DMG400007868 Solanum tuberosum HOM05D007014 ORTHO05D008894 2.3e-58 229.2 152 74.3
MELO3C024591.2 Cucumis melo HOM05D007014 ORTHO05D008894 2.9e-58 228.8 155 70.3
TPR.G21768 Trifolium pratense HOM05D007014 ORTHO05D008894 6.6e-58 227.6 159 74.8
Aa31LG1G20970 Aethionema arabicum HOM05D007014 ORTHO05D008894 8.6e-58 227.3 158 69.6
Phvul.011G117200 Phaseolus vulgaris HOM05D007014 ORTHO05D008894 8.6e-58 227.3 159 74.2
PGSC0003DMG400007866 Solanum tuberosum HOM05D007014 ORTHO05D008894 8.6e-58 227.3 152 73.0
CAN.G486.11 Capsicum annuum HOM05D007014 ORTHO05D008894 1.1e-57 226.9 151 73.5
Nn1g06593 Nelumbo nucifera HOM05D007014 ORTHO05D008894 1.9e-57 226.1 158 67.7
Sed0017748 Sechium edule HOM05D007014 ORTHO05D008894 1.9e-57 226.1 155 71.0
AT1G03650 Arabidopsis thaliana HOM05D007014 ORTHO05D008894 2.5e-57 225.7 158 69.6
Gohir.D13G066000 Gossypium hirsutum HOM05D007014 ORTHO05D008894 2.5e-57 225.7 154 71.4
Gorai.013G075300 Gossypium raimondii HOM05D007014 ORTHO05D008894 2.5e-57 225.7 154 71.4
Carub.0001s0276 Capsella rubella HOM05D007014 ORTHO05D008894 3.3e-57 225.3 158 69.0
Ciclev10022606m.g Citrus clementina HOM05D007014 ORTHO05D008894 4.2e-57 224.9 154 71.4
Cc05_g06870 Coffea canephora HOM05D007014 ORTHO05D008894 4.2e-57 224.9 154 71.4
Thecc.02G177900 Theobroma cacao HOM05D007014 ORTHO05D008894 4.2e-57 224.9 151 72.2
COL.COLO4_07554 Corchorus olitorius HOM05D007014 ORTHO05D008894 5.5e-57 224.6 158 70.3
Glyma.12G111800 Glycine max HOM05D007014 ORTHO05D008894 5.5e-57 224.6 159 71.1
Psat7g157760 Pisum sativum HOM05D007014 ORTHO05D008894 5.5e-57 224.6 159 73.6
Ciclev10022631m.g Citrus clementina HOM05D007014 ORTHO05D008894 7.2e-57 224.2 156 70.5
CARHR002980 Cardamine hirsuta HOM05D007014 ORTHO05D008894 1.2e-56 223.4 156 69.2
Lj3g0024821 Lotus japonicus HOM05D007014 ORTHO05D008894 1.2e-56 223.4 159 71.7
Sopen12g005310 Solanum pennellii HOM05D007014 ORTHO05D008894 2.1e-56 222.6 152 73.0
MSTRG.12316 Avicennia marina HOM05D007014 ORTHO05D008894 2.8e-56 222.2 159 69.2
BcaC07g42241 Brassica carinata HOM05D007014 ORTHO05D008894 6.1e-56 221.1 158 69.0
Duzib052G1001 Durio zibethinus HOM05D007014 ORTHO05D008894 6.1e-56 221.1 155 71.0
Gohir.A13G056000 Gossypium hirsutum HOM05D007014 ORTHO05D008894 6.1e-56 221.1 154 69.5
Nitab4.5_0002575g0020 Nicotiana tabacum HOM05D007014 ORTHO05D008894 1.0e-55 220.3 172 64.0
Sp1g02550 Schrenkiella parvula HOM05D007014 ORTHO05D008894 1.4e-55 219.9 153 68.6
BcaC07g42236 Brassica carinata HOM05D007014 ORTHO05D008894 1.8e-55 219.5 152 70.4
Cpa.g.sc34.144 Carica papaya HOM05D007014 ORTHO05D008894 3.0e-55 218.8 155 71.6
Solyc12g010680.3 Solanum lycopersicum HOM05D007014 ORTHO05D008894 3.0e-55 218.8 152 71.1
AL1G13150 Arabidopsis lyrata HOM05D007014 ORTHO05D008894 4.0e-55 218.4 158 69.0
Lj8A113T47 Lonicera japonica HOM05D007014 ORTHO05D008894 2.0e-54 216.1 150 69.3
CsaV3_6G013010 Cucumis sativus L. HOM05D007014 ORTHO05D008894 5.7e-54 214.5 166 63.9
Thhalv10008981m.g Eutrema salsugineum HOM05D007014 ORTHO05D008894 9.8e-54 213.8 155 67.7
BcaC07g42250 Brassica carinata HOM05D007014 ORTHO05D008894 1.3e-53 213.4 162 66.0
C08p52830 Brassica napus HOM05D007014 ORTHO05D008894 1.3e-53 213.4 162 66.0
CDE02G4296 Ceratophyllum demersum HOM05D007014 ORTHO05D008894 1.7e-53 213.0 151 67.5
PSO210G2618 Papaver somniferum HOM05D007014 ORTHO05D008894 1.7e-53 213.0 155 67.7
Sc21g0002660 Simmondsia chinensis HOM05D007014 ORTHO05D008894 2.2e-53 212.6 156 66.7
BraA09t42163Z Brassica rapa HOM05D007014 ORTHO05D008894 1.1e-52 210.3 159 66.7
MBI17_g43194_MAGBIO Magnolia biondii HOM05D007014 ORTHO05D008894 1.1e-52 210.3 153 66.7
Glyma.06G293600 Glycine max HOM05D007014 ORTHO05D008894 1.4e-52 209.9 159 67.3
BolC8t52799H Brassica oleracea HOM05D007014 ORTHO05D008894 1.8e-52 209.5 159 67.3
PSO832G4125 Papaver somniferum HOM05D007014 ORTHO05D008894 1.8e-52 209.5 155 67.1
arahy.Tifrunner.gnm1.ann1.UXPW02 Arachis hypogaea HOM05D007014 ORTHO05D008894 2.4e-52 209.1 157 66.2
CiPaw.03G175500 Carya illinoinensis HOM05D007014 ORTHO05D008894 2.4e-52 209.1 139 71.9
ATR0680G283 Amborella trichopoda HOM05D007014 ORTHO05D008894 4.1e-52 208.4 153 62.7
BcaC07g42259 Brassica carinata HOM05D007014 ORTHO05D008894 4.1e-52 208.4 162 66.0
THA.LOC104801176 Tarenaya hassleriana HOM05D007014 ORTHO05D008894 4.1e-52 208.4 155 65.8
Aqoxy4G01010 Aquilegia oxysepala HOM05D007014 ORTHO05D008894 9.2e-52 207.2 156 62.2
HanXRQChr17g0553541 Helianthus annuus HOM05D007014 ORTHO05D008894 9.2e-52 207.2 152 63.2
arahy.Tifrunner.gnm1.ann1.YPG8JQ Arachis hypogaea HOM05D007014 ORTHO05D008894 1.6e-51 206.5 157 65.6
EL10Ac9g20747 Beta vulgaris HOM05D007014 ORTHO05D008894 1.6e-51 206.5 158 62.0
SGA_v2.0_scaffold307G48064 Striga asiatica HOM05D007014 ORTHO05D008894 4.6e-51 204.9 155 63.2
arahy.Tifrunner.gnm1.ann1.1ZYA2W Arachis hypogaea HOM05D007014 ORTHO05D008894 5.9e-51 204.5 154 66.2
VMungo1127G0420 Vigna mungo HOM05D007014 ORTHO05D008894 2.9e-50 202.2 183 61.2
Migut.H01076 Erythranthe guttata HOM05D007014 ORTHO05D008894 5.0e-50 201.4 152 63.2
unitig_21.g20401 Utricularia gibba HOM05D007014 ORTHO05D008894 2.5e-49 199.1 157 59.9
HPP92_002954 Vanilla planifolia HOM05D007014 ORTHO05D008894 1.5e-46 189.9 147 61.9
arahy.Tifrunner.gnm1.ann1.THUB96 Arachis hypogaea HOM05D007014 ORTHO05D008894 4.9e-45 184.9 137 67.9
Zm00001eb044470 Zea mays HOM05D007014 ORTHO05D008894 4.9e-45 184.9 151 58.9
Lsat_1_v5_gn_8_133041 Lactuca sativa HOM05D007014 ORTHO05D008894 3.5e-43 178.7 158 55.7
Zm00001eb044400 Zea mays HOM05D007014 ORTHO05D008894 6.0e-43 177.9 151 58.3
TWI36G1550 Tripterygium wilfordii HOM05D007014 ORTHO05D008894 8.6e-42 174.1 154 55.2
ECA233G3399 Erigeron canadensis HOM05D007880 ORTHO05D003386 1.9e-41 172.9 134 60.4
Mapoly0101s0002 Marchantia polymorpha HOM05D007014 ORTHO05D008894 6.8e-39 164.5 152 55.3
Actinidia30478 Actinidia chinensis HOM05D007014 ORTHO05D008894 5.8e-38 161.4 99 76.8
Os10g0500400 Oryza sativa ssp. japonica HOM05D007014 ORTHO05D008894 2.4e-36 156.0 167 48.5
Lalb_Chr01g0005301 Lupinus albus HOM05D007014 ORTHO05D008894 1.0e-34 150.6 92 78.3
AagrBONN_evm.TU.Sc2ySwM_344.4393 Anthoceros agrestis HOM05D007014 ORTHO05D008894 3.9e-34 148.7 147 51.7
C08p52730 Brassica napus HOM05D007014 ORTHO05D008894 5.1e-34 148.3 109 68.8
A09p68280 Brassica napus HOM05D001041 ORTHO05D000846 8.6e-34 147.5 108 68.5
Lsat_1_v5_gn_8_132641 Lactuca sativa HOM05D007014 ORTHO05D008894 3.1e-31 139.0 90 70.0
QL12p004320 Quercus lobata HOM05D007014 ORTHO05D008894 1.0e-26 124.0 77 75.3
Sabra11G0072100 Salix brachista HOM05D000036 ORTHO05D000095 5.6e-25 118.2 82 74.4
Sabra15G0066900 Salix brachista HOM05D000036 ORTHO05D000095 5.6e-25 118.2 82 74.4
Ciclev10023600m.g Citrus clementina HOM05D007014 ORTHO05D008894 1.6e-24 116.7 79 72.2
Sabra13G0113700 Salix brachista HOM05D000264 ORTHO05D000152 1.8e-23 113.2 82 74.4
DCAR_013001 Daucus carota HOM05D007014 ORTHO05D008894 4.9e-21 105.1 86 64.0
Hund01169 Selenicereus undatus HOM05D007014 ORTHO05D008894 4.2e-20 102.1 81 64.2
MELO3C013609.2 Cucumis melo HOM05D007014 ORTHO05D008894 2.1e-16 89.7 71 63.4
AUR62037369 Chenopodium quinoa HOM05D007014 ORTHO05D008894 1.4e-15 87.0 68 63.2
PRCOL_00005877 Prasinoderma coloniale HOM05D007014 ORTHO05D008894 2.0e-14 83.2 96 44.8
SalBow1G7442 Salvia bowleyana HOM05D007014 ORTHO05D008894 1.9e-12 76.6 54 61.1
Pp3c2_27490 Physcomitrium patens HOM05D007014 ORTHO05D008894 3.0e-10 69.3 78 51.3
Cre17.g705950 Chlamydomonas reinhardtii HOM05D007014 ORTHO05D008894 5.6e-09 65.1 125 31.2


User provided reference genes

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