Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g14940 Fragaria vesca HOM05D036447 ORTHO05D045711 2.6e-54 214.9 94 100.0
FAN27G0588 Fragaria x ananassa HOM05D036447 ORTHO05D045711 3.1e-39 164.9 75 93.3
FAN24G2888 Fragaria x ananassa HOM05D036447 ORTHO05D202864 9.0e-39 163.3 94 79.8
TPR.G31459 Trifolium pratense HOM05D000270 ORTHO05D000163 1.5e-09 66.2 66 54.5
RcHm_v2.0_Chr2g0170521 Rosa chinensis HOM05D000270 ORTHO05D000163 2.0e-09 65.9 53 56.6
Glyma.13G069900 Glycine max HOM05D000270 ORTHO05D000163 3.3e-09 65.1 66 53.0
Sabra16G0230100 Salix brachista HOM05D000270 ORTHO05D000163 3.3e-09 65.1 51 60.8
Glyma.19G013000 Glycine max HOM05D000270 ORTHO05D000163 4.3e-09 64.7 66 53.0
FvH4_6g50260 Fragaria vesca HOM05D000270 ORTHO05D000163 9.7e-09 63.5 51 56.9
FAN02G4170 Fragaria x ananassa HOM05D000270 ORTHO05D000163 9.7e-09 63.5 51 56.9
FAN05G2150 Fragaria x ananassa HOM05D000270 ORTHO05D000163 9.7e-09 63.5 51 56.9
MD17G1039200 Malus domestica HOM05D000270 ORTHO05D000163 9.7e-09 63.5 59 52.5
Prupe.3G279800 Prunus persica HOM05D000270 ORTHO05D000163 9.7e-09 63.5 51 58.8
CiPaw.04G022700 Carya illinoinensis HOM05D000270 ORTHO05D000163 1.3e-08 63.2 51 58.8
Ca_04221_v3 Cicer arietinum L. HOM05D000270 ORTHO05D000163 1.3e-08 63.2 80 46.2
Eucgr.I01835 Eucalyptus grandis HOM05D000270 ORTHO05D000163 1.3e-08 63.2 53 58.5
CiPaw.03G035100 Carya illinoinensis HOM05D000270 ORTHO05D000163 1.7e-08 62.8 51 58.8
FAN09G1638 Fragaria x ananassa HOM05D000270 ORTHO05D000163 1.7e-08 62.8 51 56.9
PGR142G2575 Punica granatum HOM05D000270 ORTHO05D000163 1.7e-08 62.8 53 56.6
Cfa007464 Carpinus fangiana HOM05D000270 ORTHO05D000163 2.8e-08 62.0 47 61.7
Eucgr.J02174 Eucalyptus grandis HOM05D000270 ORTHO05D000163 2.8e-08 62.0 53 56.6
FAN14G0834 Fragaria x ananassa HOM05D000270 ORTHO05D000163 2.8e-08 62.0 70 47.1
FAN14G3799 Fragaria x ananassa HOM05D000270 ORTHO05D000163 2.8e-08 62.0 70 47.1
MD09G1038100 Malus domestica HOM05D000270 ORTHO05D000163 4.8e-08 61.2 51 56.9
Manes.17G119301 Manihot esculenta HOM05D000270 ORTHO05D000163 4.8e-08 61.2 68 47.1
Potri.001G350600 Populus trichocarpa HOM05D000270 ORTHO05D000163 6.3e-08 60.8 51 56.9
CsaV3_3G042060 Cucumis sativus L. HOM05D000270 ORTHO05D000163 8.2e-08 60.5 59 54.2
GSVIVG01032528001 Vitis vinifera HOM05D000270 ORTHO05D000163 8.2e-08 60.5 51 56.9
Thecc.04G004100 Theobroma cacao HOM05D000270 ORTHO05D000163 1.4e-07 59.7 53 50.9
Lj2g0015846 Lotus japonicus HOM05D000270 ORTHO05D000163 1.8e-07 59.3 51 56.9
CSS0035575 Camellia sinensis var. sinensis HOM05D000270 ORTHO05D000163 2.4e-07 58.9 51 56.9
Lsat_1_v5_gn_0_26241 Lactuca sativa HOM05D000270 ORTHO05D231094 2.4e-07 58.9 77 42.9
Os04g0465300 Oryza sativa ssp. japonica HOM05D000270 ORTHO05D000163 2.4e-07 58.9 74 43.2
ECA246G0933 Erigeron canadensis HOM05D000270 ORTHO05D007107 3.1e-07 58.5 53 50.9
Actinidia06040 Actinidia chinensis HOM05D000270 ORTHO05D000163 4.1e-07 58.2 53 52.8
MELO3C009926.2 Cucumis melo HOM05D000270 ORTHO05D000163 4.1e-07 58.2 66 50.0
VMungo0464G0102 Vigna mungo HOM05D000270 ORTHO05D000163 4.1e-07 58.2 51 56.9
Sed0019149 Sechium edule HOM05D000270 ORTHO05D000163 6.9e-07 57.4 68 47.1
Dinv09176 Davidia involucrata HOM05D000270 ORTHO05D000163 9.1e-07 57.0 51 52.9
Dinv20694 Davidia involucrata HOM05D000270 ORTHO05D000163 9.1e-07 57.0 51 54.9
Gohir.A07G218200 Gossypium hirsutum HOM05D000270 ORTHO05D000163 9.1e-07 57.0 51 54.9
Gohir.D07G225300 Gossypium hirsutum HOM05D000270 ORTHO05D000163 9.1e-07 57.0 51 54.9
Gorai.001G259700 Gossypium raimondii HOM05D000270 ORTHO05D000163 9.1e-07 57.0 51 54.9
ClCG10G014510 Citrullus lanatus HOM05D000270 ORTHO05D000163 1.5e-06 56.2 51 54.9
Phvul.003G055500 Phaseolus vulgaris HOM05D000270 ORTHO05D000163 1.5e-06 56.2 51 52.9
Cpa.g.sc14.90 Carica papaya HOM05D000270 ORTHO05D000163 2.0e-06 55.8 68 47.1
Lalb_Chr21g0319311 Lupinus albus HOM05D000270 ORTHO05D000163 2.0e-06 55.8 79 41.8
Medtr0254s0070 Medicago truncatula HOM05D000270 ORTHO05D000163 2.0e-06 55.8 51 52.9
Psat1g079160 Pisum sativum HOM05D000270 ORTHO05D000163 2.0e-06 55.8 66 47.0
Duzib147G0714 Durio zibethinus HOM05D000270 ORTHO05D000163 2.6e-06 55.5 51 52.9
FAN02G1240 Fragaria x ananassa HOM05D022604 ORTHO05D016302 2.6e-06 55.5 47 51.1
Medtr6g007897 Medicago truncatula HOM05D000270 ORTHO05D000163 2.6e-06 55.5 67 41.8
Zm00001eb080410 Zea mays HOM05D000270 ORTHO05D000163 2.6e-06 55.5 67 41.8
Lj4g0013573 Lotus japonicus HOM05D000270 ORTHO05D000163 3.4e-06 55.1 51 52.9
COL.COLO4_04325 Corchorus olitorius HOM05D000979 ORTHO05D003182 4.5e-06 54.7 51 52.9
COL.COLO4_06140 Corchorus olitorius HOM05D000270 ORTHO05D000163 4.5e-06 54.7 51 52.9
HanXRQChr09g0266031 Helianthus annuus HOM05D000270 ORTHO05D000163 4.5e-06 54.7 49 51.0
Medtr6g007917 Medicago truncatula HOM05D000270 ORTHO05D000163 4.5e-06 54.7 51 54.9
TPR.G37520 Trifolium pratense HOM05D000270 ORTHO05D000163 4.5e-06 54.7 51 52.9
MSTRG.7870 Avicennia marina HOM05D000270 ORTHO05D000163 5.9e-06 54.3 51 51.0
CDE04G1054 Ceratophyllum demersum HOM05D000270 ORTHO05D000163 5.9e-06 54.3 50 54.0
Ca_21894_v3 Cicer arietinum L. HOM05D000270 ORTHO05D000163 5.9e-06 54.3 51 52.9
Lalb_Chr06g0176431 Lupinus albus HOM05D000270 ORTHO05D000163 5.9e-06 54.3 72 41.7
Medtr4g106860 Medicago truncatula HOM05D000270 ORTHO05D000163 5.9e-06 54.3 51 52.9
Atru.chr13.1785 Acer truncatum HOM05D000270 ORTHO05D000163 7.7e-06 53.9 53 50.9
MD17G1039400 Malus domestica HOM05D000270 ORTHO05D016419 7.7e-06 53.9 57 45.6


User provided reference genes

Program Settings