Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g14600 Fragaria vesca HOM05D004436 ORTHO05D005179 6.7e-165 583.9 297 100.0
FAN24G2018 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.4e-133 479.9 244 98.8
FvH4_6g47280 Fragaria vesca HOM05D004436 ORTHO05D005179 2.4e-114 416.0 298 74.8
RcHm_v2.0_Chr2g0166351 Rosa chinensis HOM05D004436 ORTHO05D005179 3.5e-113 412.1 295 74.6
RcHm_v2.0_Chr2g0144531 Rosa chinensis HOM05D004436 ORTHO05D005179 1.6e-110 403.3 298 72.8
FAN02G3564 Fragaria x ananassa HOM05D004436 ORTHO05D005179 4.2e-106 388.7 300 69.0
FAN05G5343 Fragaria x ananassa HOM05D004436 ORTHO05D005179 5.4e-106 388.3 300 69.0
FvH4_6g34180 Fragaria vesca HOM05D004436 ORTHO05D005179 1.6e-105 386.7 300 68.7
FAN09G2135 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.6e-105 386.7 300 69.0
FAN26G0630 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.6e-102 376.7 300 66.7
FAN27G1625 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.1e-101 374.0 267 76.8
FAN14G2695 Fragaria x ananassa HOM05D004436 ORTHO05D005179 4.4e-100 368.6 336 61.3
FAN20G3048 Fragaria x ananassa HOM05D004436 ORTHO05D005179 6.0e-89 331.6 244 75.4
FAN15G1241 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.1e-82 310.8 295 62.7
Prupe.3G044800 Prunus persica HOM05D004436 ORTHO05D005179 4.8e-78 295.4 299 53.2
MD09G1187900 Malus domestica HOM05D004436 ORTHO05D005179 1.1e-77 294.3 300 54.0
CiPaw.01G221800 Carya illinoinensis HOM05D004436 ORTHO05D005179 1.0e-75 287.7 296 52.4
ClCG09G000840 Citrullus lanatus HOM05D004436 ORTHO05D005179 6.5e-75 285.0 297 53.2
CiPaw.05G181900 Carya illinoinensis HOM05D004436 ORTHO05D005179 1.9e-74 283.5 296 51.7
MELO3C024372.2 Cucumis melo HOM05D004436 ORTHO05D005179 3.2e-74 282.7 297 53.5
CsaV3_7G034640 Cucumis sativus L. HOM05D004436 ORTHO05D005179 1.6e-73 280.4 297 52.5
Sed0020704 Sechium edule HOM05D004436 ORTHO05D005179 8.7e-72 274.6 299 52.2
Sed0007780 Sechium edule HOM05D004436 ORTHO05D005179 2.5e-71 273.1 298 51.0
Manes.11G023100 Manihot esculenta HOM05D004436 ORTHO05D005179 3.3e-71 272.7 300 51.7
Eucgr.F03167 Eucalyptus grandis HOM05D004436 ORTHO05D005179 3.1e-69 266.2 297 49.2
Glyma.15G165300 Glycine max HOM05D004436 ORTHO05D005179 9.0e-69 264.6 301 49.5
FAN14G5104 Fragaria x ananassa HOM05D002326 ORTHO05D005179 5.9e-68 261.9 229 63.8
Manes.04G142200 Manihot esculenta HOM05D004436 ORTHO05D005179 7.7e-68 261.5 296 49.0
GSVIVG01016817001 Vitis vinifera HOM05D004436 ORTHO05D005179 1.3e-67 260.8 298 49.3
Potri.001G198600 Populus trichocarpa HOM05D004436 ORTHO05D005179 8.5e-67 258.1 300 48.3
Ciclev10025597m.g Citrus clementina HOM05D004436 ORTHO05D005179 1.4e-66 257.3 297 48.8
CANSAT56G1493 Cannabis sativa HOM05D004436 ORTHO05D005179 7.2e-66 255.0 299 48.5
TAR375G0086 Trochodendron aralioides HOM05D004436 ORTHO05D005179 7.2e-66 255.0 301 47.2
TWI23G0436 Tripterygium wilfordii HOM05D004436 ORTHO05D005179 9.4e-66 254.6 298 48.7
THA.LOC104804933 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 2.7e-65 253.1 301 47.8
Cpa.g.sc25.86 Carica papaya HOM05D004436 ORTHO05D005179 5.1e-64 248.8 297 47.5
Haze_15997 Corylus avellana HOM05D004436 ORTHO05D005179 6.7e-64 248.4 331 45.9
Rhsim08G0236100 Rhododendron simsii HOM05D004436 ORTHO05D005179 1.1e-63 247.7 296 47.0
Lj6g0016044 Lotus japonicus HOM05D004436 ORTHO05D005179 7.4e-63 245.0 301 46.2
Dinv30366 Davidia involucrata HOM05D004436 ORTHO05D005179 1.3e-62 244.2 297 48.8
Duzib205G0267 Durio zibethinus HOM05D004436 ORTHO05D005179 1.7e-62 243.8 300 48.7
PGR119G1065 Punica granatum HOM05D004436 ORTHO05D005179 2.8e-62 243.0 297 47.1
Thecc.03G227200 Theobroma cacao HOM05D004436 ORTHO05D005179 2.8e-62 243.0 299 47.5
Aa31LG8G1130 Aethionema arabicum HOM05D004436 ORTHO05D005179 6.3e-62 241.9 296 46.3
arahy.Tifrunner.gnm1.ann1.0TY6IG Arachis hypogaea HOM05D004436 ORTHO05D005179 6.3e-62 241.9 304 44.7
Actinidia32167 Actinidia chinensis HOM05D004436 ORTHO05D005179 1.4e-61 240.7 299 45.8
Dinv03512 Davidia involucrata HOM05D004436 ORTHO05D005179 2.4e-61 240.0 297 48.5
arahy.Tifrunner.gnm1.ann1.4RDH3B Arachis hypogaea HOM05D004436 ORTHO05D005179 3.1e-61 239.6 304 43.8
Cc04_g01610 Coffea canephora HOM05D004436 ORTHO05D005179 6.9e-61 238.4 298 46.0
Lalb_Chr08g0233321 Lupinus albus HOM05D004436 ORTHO05D005179 9.1e-61 238.0 300 45.7
Lj5A40G74 Lonicera japonica HOM05D004436 ORTHO05D005179 1.5e-60 237.3 298 47.3
Sabra01G0155800 Salix brachista HOM05D004436 ORTHO05D005179 1.5e-60 237.3 312 44.9
COL.COLO4_17027 Corchorus olitorius HOM05D004436 ORTHO05D005179 2.0e-60 236.9 301 46.8
CAN.G540.4 Capsicum annuum HOM05D004436 ORTHO05D005179 3.4e-60 236.1 297 46.1
CSS0015890 Camellia sinensis var. sinensis HOM05D004436 ORTHO05D005179 5.9e-60 235.3 297 46.8
Phvul.009G236700 Phaseolus vulgaris HOM05D004436 ORTHO05D005179 2.2e-59 233.4 303 45.5
Oeu044709.1 Olea europaea HOM05D004436 ORTHO05D005179 2.9e-59 233.0 302 46.0
Hma1.2p1_0496F.1_g166100 Hydrangea macrophylla HOM05D004436 ORTHO05D005179 6.5e-59 231.9 301 46.2
Oeu047041.1 Olea europaea HOM05D004436 ORTHO05D005179 3.2e-58 229.6 295 46.8
TPR.G13789 Trifolium pratense HOM05D004436 ORTHO05D005179 4.2e-58 229.2 300 46.0
vmacro22224 Vaccinium macrocarpon HOM05D004436 ORTHO05D005179 2.7e-57 226.5 297 46.1
COL.COLO4_30482 Corchorus olitorius HOM05D004436 ORTHO05D005179 4.7e-57 225.7 302 45.0
Ca_02096_v3 Cicer arietinum L. HOM05D004436 ORTHO05D005179 1.4e-56 224.2 301 45.5
PGSC0003DMG400016304 Solanum tuberosum HOM05D004436 ORTHO05D005179 1.8e-56 223.8 297 44.8
Lsat_1_v5_gn_5_135221 Lactuca sativa HOM05D004436 ORTHO05D005179 2.3e-56 223.4 298 44.0
Sc12g0010440 Simmondsia chinensis HOM05D004436 ORTHO05D005179 3.9e-56 222.6 301 45.5
ECA234G4408 Erigeron canadensis HOM05D004436 ORTHO05D005179 8.8e-56 221.5 296 44.3
Atru.chr1.3808 Acer truncatum HOM05D004436 ORTHO05D005179 1.5e-55 220.7 268 47.4
Solyc06g053330.4 Solanum lycopersicum HOM05D004436 ORTHO05D005179 2.0e-55 220.3 297 43.4
Sopen06g018390 Solanum pennellii HOM05D004436 ORTHO05D005179 2.0e-55 220.3 297 43.4
Medtr7g104810 Medicago truncatula HOM05D004436 ORTHO05D005179 3.3e-55 219.5 301 42.5
Nitab4.5_0000035g0090 Nicotiana tabacum HOM05D004436 ORTHO05D005179 5.7e-55 218.8 297 43.8
Medtr2g037880 Medicago truncatula HOM05D004436 ORTHO05D005179 7.4e-55 218.4 296 41.9
Nitab4.5_0012713g0010 Nicotiana tabacum HOM05D004436 ORTHO05D005179 9.7e-55 218.0 298 43.0
Peaxi162Scf00647g00219 Petunia axillaris HOM05D004436 ORTHO05D005179 1.3e-54 217.6 297 42.4
Gorai.003G182300 Gossypium raimondii HOM05D004436 ORTHO05D005179 2.2e-54 216.9 300 43.7
Peaxi162Scf00943g00014 Petunia axillaris HOM05D004436 ORTHO05D005179 2.2e-54 216.9 297 42.1
Thhalv10020760m.g Eutrema salsugineum HOM05D004436 ORTHO05D005179 2.8e-54 216.5 297 41.1
CSS0033207 Camellia sinensis var. sinensis HOM05D004436 ORTHO05D005179 4.8e-54 215.7 292 45.2
Gohir.D03G171700 Gossypium hirsutum HOM05D004436 ORTHO05D005179 4.8e-54 215.7 300 43.7
Carub.0003s1351 Capsella rubella HOM05D004436 ORTHO05D005179 6.3e-54 215.3 300 41.0
HanXRQChr10g0312341 Helianthus annuus HOM05D004436 ORTHO05D005179 6.3e-54 215.3 300 42.7
Rhsim10G0150900 Rhododendron simsii HOM05D004436 ORTHO05D005179 3.1e-53 213.0 297 43.1
Gohir.A03G000500 Gossypium hirsutum HOM05D004436 ORTHO05D005179 5.3e-53 212.2 300 43.7
Medtr2g037460 Medicago truncatula HOM05D004436 ORTHO05D005179 1.5e-52 210.7 273 44.0
Aqoxy2G00706 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 2.6e-52 209.9 304 40.5
Sp3g12180 Schrenkiella parvula HOM05D004436 ORTHO05D005179 4.5e-52 209.1 297 41.8
BcaC09g48383 Brassica carinata HOM05D004436 ORTHO05D005179 7.7e-52 208.4 300 42.7
C01p50660 Brassica napus HOM05D004436 ORTHO05D005179 7.7e-52 208.4 300 42.7
BolC1t05015H Brassica oleracea HOM05D004436 ORTHO05D005179 7.7e-52 208.4 300 42.7
Psat1g144000 Pisum sativum HOM05D004436 ORTHO05D005179 7.7e-52 208.4 302 40.7
A01p39710 Brassica napus HOM05D004436 ORTHO05D005179 2.9e-51 206.5 300 42.3
BraA01t04010Z Brassica rapa HOM05D004436 ORTHO05D005179 2.9e-51 206.5 300 42.3
AL3G26120 Arabidopsis lyrata HOM05D004436 ORTHO05D005179 3.8e-51 206.1 300 41.0
AT3G13940 Arabidopsis thaliana HOM05D004436 ORTHO05D005179 3.8e-51 206.1 300 41.0
Migut.D00948 Erythranthe guttata HOM05D004436 ORTHO05D005179 3.8e-51 206.1 305 40.7
SGA_v2.0_scaffold68G22895 Striga asiatica HOM05D004436 ORTHO05D005179 3.8e-51 206.1 302 41.4
MSTRG.22562 Avicennia marina HOM05D004436 ORTHO05D005179 3.2e-50 203.0 299 42.1
CDE07G0038 Ceratophyllum demersum HOM05D004436 ORTHO05D005179 3.2e-50 203.0 308 39.0
Lj6g0018808 Lotus japonicus HOM05D004436 ORTHO05D005179 1.2e-49 201.1 252 47.6
DCAR_026403 Daucus carota HOM05D004436 ORTHO05D005179 4.7e-49 199.1 300 37.7
MD17G1172300 Malus domestica HOM05D004436 ORTHO05D005179 1.0e-48 198.0 220 49.5
Ah.07g197300 Amaranthus hybridus HOM05D004436 ORTHO05D005179 2.3e-48 196.8 298 40.6
AUR62009860 Chenopodium quinoa HOM05D004436 ORTHO05D005179 6.7e-48 195.3 299 40.5
Nitab4.5_0004287g0020 Nicotiana tabacum HOM05D004436 ORTHO05D005179 6.7e-48 195.3 263 42.6
TPR.G16505 Trifolium pratense HOM05D004436 ORTHO05D005179 6.7e-48 195.3 217 49.8
BcaB04g20967 Brassica carinata HOM05D004436 ORTHO05D005179 8.8e-48 194.9 305 41.0
CARHR088750 Cardamine hirsuta HOM05D004436 ORTHO05D005179 2.0e-47 193.7 304 38.8
EL10Ac7g16380 Beta vulgaris HOM05D004436 ORTHO05D005179 5.7e-47 192.2 297 39.4
Hund20819 Selenicereus undatus HOM05D004436 ORTHO05D005179 1.7e-46 190.7 298 38.6
AUR62001510 Chenopodium quinoa HOM05D004436 ORTHO05D005179 2.8e-46 189.9 299 39.5
EL10Ac7g16378 Beta vulgaris HOM05D004436 ORTHO05D005179 3.5e-44 183.0 298 37.2
Peaxi162Scf00060g02815 Petunia axillaris HOM05D004436 ORTHO05D005179 3.8e-43 179.5 292 39.0
QL05p009436 Quercus lobata HOM05D004436 ORTHO05D005179 1.1e-42 177.9 502 30.1
Carub.0003s3547 Capsella rubella HOM05D004436 ORTHO05D005179 2.7e-41 173.3 211 45.5
unitig_26.g9010 Utricularia gibba HOM05D000572 ORTHO05D002399 2.7e-41 173.3 272 40.8
PSO724G1089 Papaver somniferum HOM05D004436 ORTHO05D005179 8.0e-41 171.8 308 37.7
PSO135G0558 Papaver somniferum HOM05D004436 ORTHO05D005179 3.4e-39 166.4 308 36.4
FAN09G3702 Fragaria x ananassa HOM05D002326 ORTHO05D005179 2.2e-38 163.7 299 40.5
ATR0762G049 Amborella trichopoda HOM05D004436 ORTHO05D005179 3.7e-38 162.9 324 35.8
FAN02G4131 Fragaria x ananassa HOM05D002326 ORTHO05D005179 9.1e-37 158.3 300 40.0
DCAR_023423 Daucus carota HOM05D004436 ORTHO05D005179 2.7e-36 156.8 242 38.4
SEGI_28110 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 2.7e-36 156.8 322 32.6
Actinidia21779 Actinidia chinensis HOM05D004436 ORTHO05D005179 2.1e-33 147.1 296 34.1
HPP92_009424 Vanilla planifolia HOM05D004436 ORTHO05D005179 6.1e-33 145.6 311 33.1
Aqoxy2G02914 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 6.8e-32 142.1 146 52.1
Ah.08g216510 Amaranthus hybridus HOM05D004436 ORTHO05D005179 2.0e-31 140.6 293 34.8
Nn6g35749 Nelumbo nucifera HOM05D004436 ORTHO05D005179 5.7e-31 139.0 144 53.5
Aqoxy7G00272 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 9.8e-31 138.3 206 38.3
Mapoly0063s0055 Marchantia polymorpha HOM05D004436 ORTHO05D005179 1.8e-29 134.0 338 30.2
Zm00001eb166800 Zea mays HOM05D004436 ORTHO05D005179 3.5e-28 129.8 308 31.2
Ca_27339_v3 Cicer arietinum L. HOM05D004436 ORTHO05D005179 7.7e-28 128.6 186 41.9
Os11g0615100 Oryza sativa ssp. japonica HOM05D004436 ORTHO05D005179 1.3e-27 127.9 290 34.8
AagrBONN_evm.TU.Sc2ySwM_368.2707 Anthoceros agrestis HOM05D004436 ORTHO05D005179 4.0e-24 116.3 335 29.6
Pp3c8_24340 Physcomitrium patens HOM05D004436 ORTHO05D005179 2.6e-23 113.6 328 28.0
Oeu004353.1 Olea europaea HOM05D004436 ORTHO05D005179 2.2e-22 110.5 102 54.9
THA.LOC104822769 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 2.3e-19 100.5 128 43.0
Haze_06394 Corylus avellana HOM05D004436 ORTHO05D005179 2.1e-17 94.0 249 32.9
Dinv21190 Davidia involucrata HOM05D004436 ORTHO05D005179 4.7e-17 92.8 103 49.5
AL1G64440 Arabidopsis lyrata HOM05D004436 ORTHO05D005179 1.3e-14 84.7 169 33.1
PGSC0003DMG400002436 Solanum tuberosum HOM05D004436 ORTHO05D005179 1.3e-14 84.7 87 52.9
AUR62000997 Chenopodium quinoa HOM05D004436 ORTHO05D005179 8.3e-14 82.0 140 34.3
SEGI_22335 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 1.9e-13 80.9 206 30.6
Aqoxy2G02915 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 7.3e-10 68.9 136 34.6
FAN14G1374 Fragaria x ananassa HOM05D004436 ORTHO05D005179 7.3e-10 68.9 54 66.7
Peaxi162Scf01131g00007 Petunia axillaris HOM05D004436 ORTHO05D005179 9.5e-10 68.6 81 48.1
CBR_g45967 Chara braunii HOM05D004436 ORTHO05D005179 2.8e-09 67.0 383 22.7
FAN05G3968 Fragaria x ananassa HOM05D004436 ORTHO05D005179 8.9e-08 62.0 53 62.3
PSO017G0055 Papaver somniferum HOM05D004436 ORTHO05D005179 2.2e-06 57.4 127 33.1


User provided reference genes

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