Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g14200 Fragaria vesca HOM05D006114 ORTHO05D007609 1.9e-191 672.5 401 100.0
FAN15G0766 Fragaria x ananassa HOM05D006114 ORTHO05D007609 2.4e-173 612.5 294 99.0
FAN24G0263 Fragaria x ananassa HOM05D006114 ORTHO05D007609 5.7e-167 591.3 282 99.6
RcHm_v2.0_Chr6g0276341 Rosa chinensis HOM05D006114 ORTHO05D007609 1.5e-154 550.1 292 89.7
MD05G1021300 Malus domestica HOM05D006114 ORTHO05D007609 3.5e-140 502.3 295 80.7
Prupe.8G025000 Prunus persica HOM05D006114 ORTHO05D007609 2.9e-139 499.2 291 80.8
Haze_17740 Corylus avellana HOM05D006114 ORTHO05D007609 5.0e-139 498.4 296 78.4
Cfa018335 Carpinus fangiana HOM05D006114 ORTHO05D007609 8.6e-139 497.7 294 78.9
MD10G1022100 Malus domestica HOM05D006114 ORTHO05D007609 8.6e-139 497.7 295 79.7
CANSAT25G1256 Cannabis sativa HOM05D006114 ORTHO05D007609 5.2e-136 488.4 292 79.1
CiPaw.16G014300 Carya illinoinensis HOM05D006114 ORTHO05D007609 3.4e-135 485.7 298 77.9
QL02p024207 Quercus lobata HOM05D006114 ORTHO05D007609 8.3e-134 481.1 292 78.4
TAR381G1603 Trochodendron aralioides HOM05D006114 ORTHO05D007609 3.0e-131 472.6 293 77.1
CSS0028797 Camellia sinensis var. sinensis HOM05D006114 ORTHO05D007609 4.3e-130 468.8 295 73.9
DCAR_010096 Daucus carota HOM05D006114 ORTHO05D007609 2.3e-128 463.0 293 75.8
Sed0024386 Sechium edule HOM05D006114 ORTHO05D007609 5.2e-128 461.8 290 75.9
Hma1.2p1_0616F.1_g190010 Hydrangea macrophylla HOM05D006114 ORTHO05D007609 7.5e-127 458.0 289 76.8
Sabra02G0054600 Salix brachista HOM05D006114 ORTHO05D007609 2.9e-126 456.1 296 73.6
Eucgr.F02716 Eucalyptus grandis HOM05D006114 ORTHO05D007609 3.7e-126 455.7 300 73.3
TAR625G1556 Trochodendron aralioides HOM05D006114 ORTHO05D007609 8.3e-126 454.5 294 73.8
Nn1g06119 Nelumbo nucifera HOM05D006114 ORTHO05D007609 1.1e-125 454.1 293 74.4
Cpa.g.sc21.182 Carica papaya HOM05D006114 ORTHO05D007609 4.1e-125 452.2 291 75.6
Actinidia15143 Actinidia chinensis HOM05D006114 ORTHO05D007609 9.2e-125 451.1 297 72.7
Lalb_Chr19g0130321 Lupinus albus HOM05D006114 ORTHO05D007609 3.5e-124 449.1 312 71.5
Lj7A371T45 Lonicera japonica HOM05D006114 ORTHO05D007609 6.0e-124 448.4 294 73.5
Potri.002G069900 Populus trichocarpa HOM05D006114 ORTHO05D007609 7.8e-124 448.0 296 72.6
Ca_27292_v3 Cicer arietinum L. HOM05D006114 ORTHO05D007609 2.3e-123 446.4 311 70.4
Dinv41097 Davidia involucrata HOM05D006114 ORTHO05D007609 2.3e-123 446.4 282 75.5
Lj2g0010896 Lotus japonicus HOM05D006114 ORTHO05D007609 2.3e-123 446.4 307 71.0
PSO675G2834 Papaver somniferum HOM05D006114 ORTHO05D007609 5.0e-123 445.3 295 70.5
Manes.02G177800 Manihot esculenta HOM05D006114 ORTHO05D007609 1.9e-122 443.4 317 68.8
Lsat_1_v5_gn_1_8460 Lactuca sativa HOM05D006114 ORTHO05D007609 7.3e-122 441.4 296 73.0
COL.COLO4_24672 Corchorus olitorius HOM05D006114 ORTHO05D007609 1.2e-121 440.7 302 70.5
PSO541G3056 Papaver somniferum HOM05D006114 ORTHO05D007609 2.1e-121 439.9 295 69.5
Aqoxy5G02132 Aquilegia oxysepala HOM05D006114 ORTHO05D007609 6.2e-121 438.3 293 72.4
TWI34G0188 Tripterygium wilfordii HOM05D006114 ORTHO05D007609 6.2e-121 438.3 296 69.6
Ciclev10001576m.g Citrus clementina HOM05D006114 ORTHO05D007609 8.1e-121 438.0 298 71.1
Potri.005G190400 Populus trichocarpa HOM05D006114 ORTHO05D007609 8.1e-121 438.0 297 71.4
SpUn0346_0010 Schrenkiella parvula HOM05D006114 ORTHO05D007609 2.3e-120 436.4 296 71.6
AT1G76920 Arabidopsis thaliana HOM05D006114 ORTHO05D007609 4.0e-120 435.6 296 71.3
Carub.0002s2378 Capsella rubella HOM05D006114 ORTHO05D007609 6.8e-120 434.9 296 71.3
AL2G37050 Arabidopsis lyrata HOM05D006114 ORTHO05D007609 8.9e-120 434.5 296 70.9
PGR042G1057 Punica granatum HOM05D006114 ORTHO05D007609 3.4e-119 432.6 299 71.6
PGR122G0006 Punica granatum HOM05D006114 ORTHO05D007609 3.4e-119 432.6 299 71.6
TWI32G1226 Tripterygium wilfordii HOM05D006114 ORTHO05D007609 4.4e-119 432.2 296 70.6
Gohir.D05G271900 Gossypium hirsutum HOM05D006114 ORTHO05D007609 9.8e-119 431.0 300 69.3
Gorai.009G284900 Gossypium raimondii HOM05D006114 ORTHO05D007609 9.8e-119 431.0 300 69.3
THA.LOC104812044 Tarenaya hassleriana HOM05D006114 ORTHO05D007609 9.8e-119 431.0 296 69.9
C06p31720 Brassica napus HOM05D006114 ORTHO05D007609 1.3e-118 430.6 292 71.9
BolC6t38302H Brassica oleracea HOM05D006114 ORTHO05D007609 1.3e-118 430.6 292 71.9
BraA07t30466Z Brassica rapa HOM05D006114 ORTHO05D007609 1.3e-118 430.6 292 71.9
BcaC08g45501 Brassica carinata HOM05D006114 ORTHO05D007609 2.2e-118 429.9 292 71.9
Duzib116G0820 Durio zibethinus HOM05D006114 ORTHO05D007609 2.2e-118 429.9 300 68.7
Gohir.A05G269900 Gossypium hirsutum HOM05D006114 ORTHO05D007609 2.2e-118 429.9 300 69.0
BcaB05g25019 Brassica carinata HOM05D006114 ORTHO05D007609 2.9e-118 429.5 292 71.9
A07p28250 Brassica napus HOM05D006114 ORTHO05D007609 2.9e-118 429.5 292 71.6
BcaB02g07084 Brassica carinata HOM05D006114 ORTHO05D007609 3.7e-118 429.1 293 71.3
Thhalv10019824m.g Eutrema salsugineum HOM05D006114 ORTHO05D007609 4.9e-118 428.7 292 70.9
Thecc.08G149100 Theobroma cacao HOM05D006114 ORTHO05D007609 4.9e-118 428.7 302 69.2
Solyc04g071130.1 Solanum lycopersicum HOM05D006114 ORTHO05D007609 8.3e-118 427.9 300 67.7
Sopen04g027070 Solanum pennellii HOM05D006114 ORTHO05D007609 8.3e-118 427.9 300 67.7
PGSC0003DMG400000797 Solanum tuberosum HOM05D006114 ORTHO05D007609 1.1e-117 427.6 300 67.7
THA.LOC104813707 Tarenaya hassleriana HOM05D006114 ORTHO05D007609 1.9e-117 426.8 296 68.6
Medtr6g034935 Medicago truncatula HOM05D006114 ORTHO05D007609 3.2e-117 426.0 315 67.6
Ah.08g215970 Amaranthus hybridus HOM05D006114 ORTHO05D007609 4.1e-117 425.6 301 69.8
Duzib041G0274 Durio zibethinus HOM05D006114 ORTHO05D007609 4.1e-117 425.6 300 69.3
Hund26709 Selenicereus undatus HOM05D006114 ORTHO05D000105 5.4e-117 425.2 305 68.2
HanXRQChr02g0039921 Helianthus annuus HOM05D006114 ORTHO05D007609 9.2e-117 424.5 294 69.4
CAN.G175.3 Capsicum annuum HOM05D006114 ORTHO05D007609 1.2e-116 424.1 301 67.1
EL10Ac7g15790 Beta vulgaris HOM05D006114 ORTHO05D007609 1.6e-116 423.7 294 69.0
Aa31LG4G6950 Aethionema arabicum HOM05D006114 ORTHO05D007609 3.5e-116 422.5 296 69.6
AUR62039242 Chenopodium quinoa HOM05D006114 ORTHO05D007609 1.0e-115 421.0 302 68.5
Nitab4.5_0006608g0010 Nicotiana tabacum HOM05D006114 ORTHO05D007609 1.3e-115 420.6 310 65.2
Sed0010814 Sechium edule HOM05D006114 ORTHO05D007609 1.3e-115 420.6 293 69.6
Atru.chr13.2189 Acer truncatum HOM05D006114 ORTHO05D007609 5.1e-115 418.7 296 68.2
VMungo0464G2055 Vigna mungo HOM05D006114 ORTHO05D007609 6.6e-115 418.3 304 67.4
Rhsim05G0182400 Rhododendron simsii HOM05D006114 ORTHO05D007609 1.6e-113 413.7 298 68.8
Phvul.004G097500 Phaseolus vulgaris HOM05D006114 ORTHO05D007609 1.1e-112 411.0 305 65.6
SalBow7G1400 Salvia bowleyana HOM05D006114 ORTHO05D007609 4.0e-112 409.1 296 65.2
FAN27G1342 Fragaria x ananassa HOM05D006114 ORTHO05D007609 8.9e-112 407.9 198 97.5
Nitab4.5_0000032g0440 Nicotiana tabacum HOM05D006114 ORTHO05D007609 2.0e-111 406.8 300 65.0
Oeu032982.1 Olea europaea HOM05D006114 ORTHO05D007609 3.4e-111 406.0 316 61.7
Cc10_g14550 Coffea canephora HOM05D006114 ORTHO05D007609 2.9e-110 402.9 307 65.1
MSTRG.1356 Avicennia marina HOM05D006114 ORTHO05D007609 1.1e-109 401.0 312 60.9
Glyma.02G083400 Glycine max HOM05D006114 ORTHO05D007609 3.0e-107 392.9 299 66.6
Peaxi162Scf00263g01414 Petunia axillaris HOM05D006114 ORTHO05D007609 6.6e-107 391.7 280 67.5
Migut.C01010 Erythranthe guttata HOM05D006114 ORTHO05D007609 4.3e-106 389.0 316 59.8
MSTRG.22368 Avicennia marina HOM05D006114 ORTHO05D007609 4.7e-105 385.6 306 61.8
ECA247G0840 Erigeron canadensis HOM05D006114 ORTHO05D007609 1.5e-103 380.6 252 73.4
unitig_749.g13920 Utricularia gibba HOM05D006114 ORTHO05D007609 1.3e-102 377.5 309 60.2
MBI17_g34067_MAGBIO Magnolia biondii HOM05D006114 ORTHO05D007609 1.1e-96 357.8 276 67.4
Medtr6g049050 Medicago truncatula HOM05D006114 ORTHO05D007609 1.6e-92 344.0 304 57.2
Lj7A371T46 Lonicera japonica HOM05D006114 ORTHO05D007609 2.7e-92 343.2 293 59.4
HPP92_009302 Vanilla planifolia HOM05D006114 ORTHO05D007609 9.6e-90 334.7 312 56.4
Zm00001eb434300 Zea mays HOM05D006114 ORTHO05D007609 1.9e-85 320.5 334 48.8
CARHR070420 Cardamine hirsuta HOM05D006114 ORTHO05D007609 5.5e-85 318.9 220 71.4
Psat0s3019g0080 Pisum sativum HOM05D006114 ORTHO05D007609 2.5e-82 310.1 217 71.0
AUR62009796 Chenopodium quinoa HOM05D006114 ORTHO05D007609 1.1e-80 304.7 197 74.1
Zm00001eb076050 Zea mays HOM05D006114 ORTHO05D007609 1.4e-80 304.3 318 49.4
Os04g0686700 Oryza sativa ssp. japonica HOM05D006114 ORTHO05D007609 2.0e-79 300.4 317 49.5
GSVIVG01034899001 Vitis vinifera HOM05D006114 ORTHO05D007609 2.6e-71 273.5 249 57.4
Migut.N03218 Erythranthe guttata HOM05D006114 ORTHO05D007609 7.6e-71 271.9 313 48.9
TPR.G36696 Trifolium pratense HOM05D006114 ORTHO05D007609 1.5e-66 257.7 163 74.8
Oeu046020.2 Olea europaea HOM05D006114 ORTHO05D007609 1.1e-58 231.5 262 46.9
FAN14G0378 Fragaria x ananassa HOM05D006114 ORTHO05D007609 5.3e-56 222.6 124 91.9
SGA_v2.0_scaffold48G17978 Striga asiatica HOM05D006114 ORTHO05D007609 3.4e-55 219.9 155 65.2
SEGI_30218 Sequoiadendron giganteum HOM05D006114 ORTHO05D007609 3.0e-51 206.8 297 35.7
unitig_26.g9904 Utricularia gibba HOM05D006114 ORTHO05D007609 1.2e-47 194.9 179 54.7
Zm00001eb268540 Zea mays HOM05D006114 ORTHO05D007609 1.2e-42 178.3 184 49.5
FvH4_3g14282 Fragaria vesca HOM05D006114 ORTHO05D007609 2.0e-42 177.6 90 95.6
AUR62039241 Chenopodium quinoa HOM05D006114 ORTHO05D007609 1.9e-37 161.0 206 46.1
unitig_26.g9903 Utricularia gibba HOM05D006114 ORTHO05D007609 1.9e-37 161.0 110 68.2
AUR62009795 Chenopodium quinoa HOM05D006114 ORTHO05D007609 4.2e-37 159.8 213 44.6
ATR0772G199 Amborella trichopoda HOM05D006114 ORTHO05D007609 4.0e-35 153.3 199 45.7
Zm00001eb182860 Zea mays HOM05D006114 ORTHO05D007609 2.2e-25 120.9 144 41.7
CDE08G0205 Ceratophyllum demersum HOM05D006114 ORTHO05D007609 3.7e-25 120.2 93 64.5
FvH4_6g34681 Fragaria vesca HOM05D006114 ORTHO05D007609 1.0e-22 112.1 60 91.7
Zm00001eb346130 Zea mays HOM05D003599 ORTHO05D004221 8.6e-22 109.0 93 55.9
Zm00001eb268570 Zea mays HOM05D006114 ORTHO05D007609 7.3e-21 105.9 129 44.2
Zm00001eb243390 Zea mays HOM05D006114 ORTHO05D007609 2.1e-20 104.4 95 53.7
FvH4_6g34680 Fragaria vesca HOM05D006114 ORTHO05D007609 2.6e-18 97.4 49 95.9
VMungo1383G2819 Vigna mungo HOM05D006114 ORTHO05D007609 4.4e-18 96.7 77 63.6
Zm00001eb080990 Zea mays HOM05D006114 ORTHO05D007609 4.9e-17 93.2 77 55.8
Zm00001eb268560 Zea mays HOM05D006114 ORTHO05D007609 7.0e-16 89.4 102 44.1
Zm00001eb080980 Zea mays HOM05D006114 ORTHO05D007609 2.7e-15 87.4 103 42.7
arahy.Tifrunner.gnm1.ann1.0BPN3L Arachis hypogaea HOM05D000034 ORTHO05D000037 3.3e-13 80.5 58 63.8
AagrBONN_evm.TU.Sc2ySwM_228.846 Anthoceros agrestis HOM05D002809 ORTHO05D004939 8.0e-12 75.9 298 27.2
SGA_v2.0_scaffold52G19058 Striga asiatica HOM05D004302 ORTHO05D004939 8.0e-12 75.9 283 27.2
DCAR_025461 Daucus carota HOM05D004302 ORTHO05D004939 1.4e-11 75.1 280 27.5
Mapoly0125s0029 Marchantia polymorpha HOM05D002809 ORTHO05D009091 1.4e-11 75.1 280 27.1
GSVIVG01036521001 Vitis vinifera HOM05D004302 ORTHO05D004939 1.8e-11 74.7 280 27.9
THA.LOC104820986 Tarenaya hassleriana HOM05D004302 ORTHO05D004939 3.1e-11 73.9 287 26.1
VMungo1383G1338 Vigna mungo HOM05D004302 ORTHO05D004939 5.2e-11 73.2 280 27.9
Glyma.08G253600 Glycine max HOM05D004302 ORTHO05D004939 6.8e-11 72.8 280 27.9
Ciclev10017846m.g Citrus clementina HOM05D005977 ORTHO05D007546 8.9e-11 72.4 318 26.7
Phvul.008G025000 Phaseolus vulgaris HOM05D004302 ORTHO05D004939 8.9e-11 72.4 278 27.7
SMO276G0031 Selaginella moellendorffii HOM05D007753 ORTHO05D009385 8.9e-11 72.4 312 24.4
CSS0018053 Camellia sinensis var. sinensis HOM05D005977 ORTHO05D007546 2.0e-10 71.2 312 27.6
MELO3C022055.2 Cucumis melo HOM05D004302 ORTHO05D004939 2.0e-10 71.2 273 26.4
CsaV3_5G038750 Cucumis sativus L. HOM05D004302 ORTHO05D004939 2.0e-10 71.2 273 26.4
Glyma.18G275900 Glycine max HOM05D004302 ORTHO05D004939 2.0e-10 71.2 280 27.9
Psat3g208160 Pisum sativum HOM05D004302 ORTHO05D004939 2.0e-10 71.2 277 28.2
ClCG11G005010 Citrullus lanatus HOM05D004302 ORTHO05D004939 2.6e-10 70.9 273 26.4
CANSAT64G2833 Cannabis sativa HOM05D004302 ORTHO05D004939 4.4e-10 70.1 280 27.9
COL.COLO4_10644 Corchorus olitorius HOM05D004302 ORTHO05D004939 5.8e-10 69.7 282 25.9
Medtr7g017400 Medicago truncatula HOM05D004302 ORTHO05D004939 5.8e-10 69.7 279 28.0
SGA_v2.0_scaffold17G07917 Striga asiatica HOM05D006114 ORTHO05D007609 5.8e-10 69.7 96 43.8
Cc09_g05180 Coffea canephora HOM05D005977 ORTHO05D007546 7.5e-10 69.3 317 27.1
Thecc.02G004000 Theobroma cacao HOM05D005977 ORTHO05D007546 7.5e-10 69.3 315 26.3
Actinidia34692 Actinidia chinensis HOM05D005977 ORTHO05D007546 9.8e-10 68.9 314 27.7
Duzib138G0864 Durio zibethinus HOM05D004302 ORTHO05D004939 1.3e-09 68.6 282 25.9
Lj1P1149T39 Lonicera japonica HOM05D005977 ORTHO05D007546 1.3e-09 68.6 312 27.9
Migut.M02009 Erythranthe guttata HOM05D005977 ORTHO05D007546 2.2e-09 67.8 305 26.6
Pp3c7_9930 Physcomitrium patens HOM05D002809 ORTHO05D004939 2.2e-09 67.8 279 25.4
RcHm_v2.0_Chr2g0119661 Rosa chinensis HOM05D006114 ORTHO05D007609 2.2e-09 67.8 38 78.9
Duzib132G1078 Durio zibethinus HOM05D005977 ORTHO05D007546 3.7e-09 67.0 315 25.7
SHI24793 Sapria himalayana HOM05D005977 ORTHO05D007546 3.7e-09 67.0 309 26.2
Potri.003G074100 Populus trichocarpa HOM05D005977 ORTHO05D007546 1.1e-08 65.5 304 25.7
PGR102G0169 Punica granatum HOM05D007753 ORTHO05D009385 4.1e-08 63.5 320 25.3
Mapoly0019s0019 Marchantia polymorpha HOM05D002809 ORTHO05D004563 3.5e-07 60.5 314 25.8
SMO116G0047 Selaginella moellendorffii HOM05D002809 ORTHO05D004563 6.0e-07 59.7 279 25.1
CANSAT56G3650 Cannabis sativa HOM05D003005 ORTHO05D004170 2.3e-06 57.8 320 25.3
Eucgr.E04314 Eucalyptus grandis HOM05D005977 ORTHO05D007546 2.3e-06 57.8 287 26.1
Sc20g0003450 Simmondsia chinensis HOM05D006114 ORTHO05D007609 2.3e-06 57.8 44 68.2
SMO174G0259 Selaginella moellendorffii HOM05D003005 ORTHO05D021244 5.0e-06 56.6 210 27.1
SMO296G0037 Selaginella moellendorffii HOM05D003005 ORTHO05D021244 8.6e-06 55.8 210 26.7


User provided reference genes

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