Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g13070 Fragaria vesca HOM05D005519 ORTHO05D006423 7.1e-72 274.2 186 100.0
RcHm_v2.0_Chr6g0274331 Rosa chinensis HOM05D005519 ORTHO05D006423 4.5e-66 255.0 187 95.7
FAN24G1125 Fragaria x ananassa HOM05D003947 ORTHO05D004614 1.4e-64 250.0 181 96.1
FAN27G0467 Fragaria x ananassa HOM05D005519 ORTHO05D006423 2.8e-60 235.7 173 86.1
FAN15G1092 Fragaria x ananassa HOM05D003947 ORTHO05D004614 4.2e-56 221.9 145 93.1
Prupe.8G039900 Prunus persica HOM05D005519 ORTHO05D006423 1.6e-55 219.9 192 85.4
MD05G1032800 Malus domestica HOM05D005519 ORTHO05D006423 6.7e-54 214.5 195 75.4
MD10G1033800 Malus domestica HOM05D005519 ORTHO05D006423 8.8e-54 214.2 192 85.9
Glyma.20G169500 Glycine max HOM05D005519 ORTHO05D006423 1.8e-51 206.5 186 63.4
Glyma.10G222100 Glycine max HOM05D005519 ORTHO05D006423 2.4e-51 206.1 186 63.4
PGR042G3808 Punica granatum HOM05D005519 ORTHO05D006423 7.7e-50 201.1 190 70.0
CiPaw.15G012900 Carya illinoinensis HOM05D005519 ORTHO05D006423 1.0e-49 200.7 186 72.6
Glyma.16G163800 Glycine max HOM05D005519 ORTHO05D006423 1.0e-49 200.7 190 62.1
Phvul.004G091300 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 5.0e-49 198.4 190 62.1
MSTRG.25301 Avicennia marina HOM05D005519 ORTHO05D006423 8.5e-49 197.6 188 74.5
VMungo0720G0436 Vigna mungo HOM05D005519 ORTHO05D006423 1.1e-48 197.2 186 64.0
Glyma.02G079400 Glycine max HOM05D005519 ORTHO05D006423 7.2e-48 194.5 192 60.4
Hma1.2p1_0358F.1_g134710 Hydrangea macrophylla HOM05D005519 ORTHO05D006423 1.6e-47 193.4 188 73.4
Phvul.007G083000 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 2.1e-47 193.0 186 65.1
VMungo0464G1678 Vigna mungo HOM05D005519 ORTHO05D006423 2.1e-47 193.0 192 70.8
Manes.18G094400 Manihot esculenta HOM05D005519 ORTHO05D006423 2.7e-47 192.6 195 76.4
CiPaw.16G008800 Carya illinoinensis HOM05D005519 ORTHO05D006423 3.6e-47 192.2 186 72.6
Cfa018287 Carpinus fangiana HOM05D005519 ORTHO05D006423 1.8e-46 189.9 194 70.1
TWI32G0061 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 3.0e-46 189.1 187 64.7
QL02p038173 Quercus lobata HOM05D005519 ORTHO05D006423 3.9e-46 188.7 192 69.8
TWI34G0476 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 2.0e-45 186.4 187 74.3
arahy.Tifrunner.gnm1.ann1.8F5AL7 Arachis hypogaea HOM05D005519 ORTHO05D006423 2.6e-45 186.0 193 59.6
Haze_17800 Corylus avellana HOM05D005519 ORTHO05D006423 2.6e-45 186.0 193 75.6
Manes.02G182800 Manihot esculenta HOM05D005519 ORTHO05D006423 2.6e-45 186.0 195 74.4
Peaxi162Scf00160g01746 Petunia axillaris HOM05D005519 ORTHO05D006423 2.6e-45 186.0 188 67.0
QL02p037831 Quercus lobata HOM05D005519 ORTHO05D006423 2.6e-45 186.0 192 64.6
TAR381G0167 Trochodendron aralioides HOM05D005519 ORTHO05D006423 2.6e-45 186.0 186 66.1
PGSC0003DMG400018793 Solanum tuberosum HOM05D005519 ORTHO05D006423 3.3e-45 185.7 188 61.2
arahy.Tifrunner.gnm1.ann1.SKG6R6 Arachis hypogaea HOM05D005519 ORTHO05D006423 4.4e-45 185.3 193 59.1
Potri.005G196100 Populus trichocarpa HOM05D005519 ORTHO05D006423 4.4e-45 185.3 193 73.6
Thecc.08G158600 Theobroma cacao HOM05D005519 ORTHO05D006423 4.4e-45 185.3 186 75.3
Dinv25895 Davidia involucrata HOM05D005519 ORTHO05D006423 7.4e-45 184.5 187 69.0
Ca_10667_v3 Cicer arietinum L. HOM05D005519 ORTHO05D006423 9.7e-45 184.1 187 61.5
Lj2g0026694 Lotus japonicus HOM05D005519 ORTHO05D006423 9.7e-45 184.1 186 62.9
Lalb_Chr19g0130091 Lupinus albus HOM05D005519 ORTHO05D006423 9.7e-45 184.1 187 57.8
Potri.002G065000 Populus trichocarpa HOM05D005519 ORTHO05D006423 9.7e-45 184.1 196 70.9
Cpa.g.sc49.79 Carica papaya HOM05D005519 ORTHO05D006423 1.3e-44 183.7 186 71.0
Cc10_g15180 Coffea canephora HOM05D005519 ORTHO05D006423 1.3e-44 183.7 193 76.2
Nitab4.5_0002812g0030 Nicotiana tabacum HOM05D005519 ORTHO05D006423 1.3e-44 183.7 191 65.4
Sabra02G0051900 Salix brachista HOM05D005519 ORTHO05D006423 1.3e-44 183.7 197 70.1
Solyc04g071930.4 Solanum lycopersicum HOM05D005519 ORTHO05D006423 1.3e-44 183.7 188 68.1
PGSC0003DMG400025068 Solanum tuberosum HOM05D005519 ORTHO05D006423 1.3e-44 183.7 188 68.1
Gohir.A05G246000 Gossypium hirsutum HOM05D005519 ORTHO05D006423 2.2e-44 183.0 189 64.0
Gohir.D05G247500 Gossypium hirsutum HOM05D005519 ORTHO05D006423 2.2e-44 183.0 189 66.7
Sopen04g027910 Solanum pennellii HOM05D005519 ORTHO05D006423 2.2e-44 183.0 188 67.0
Lj5g0019555 Lotus japonicus HOM05D005519 ORTHO05D006423 2.8e-44 182.6 191 66.0
Duzib116G0927 Durio zibethinus HOM05D005519 ORTHO05D006423 3.7e-44 182.2 193 61.7
Gorai.009G258300 Gossypium raimondii HOM05D005519 ORTHO05D006423 3.7e-44 182.2 189 66.7
Nitab4.5_0000872g0010 Nicotiana tabacum HOM05D005519 ORTHO05D006423 3.7e-44 182.2 188 63.3
Nitab4.5_0001103g0040 Nicotiana tabacum HOM05D005519 ORTHO05D006423 3.7e-44 182.2 188 66.0
Sabra05G0149500 Salix brachista HOM05D005519 ORTHO05D006423 3.7e-44 182.2 192 72.9
Peaxi162Scf00360g00028 Petunia axillaris HOM05D005519 ORTHO05D006423 4.8e-44 181.8 205 55.6
Nitab4.5_0000099g0170 Nicotiana tabacum HOM05D005519 ORTHO05D006423 6.3e-44 181.4 188 70.2
Psat6g190880 Pisum sativum HOM05D005519 ORTHO05D006423 8.2e-44 181.0 187 57.2
Duzib093G1843 Durio zibethinus HOM05D005519 ORTHO05D006423 1.1e-43 180.6 190 67.4
Solyc12g056620.2 Solanum lycopersicum HOM05D005519 ORTHO05D006423 1.1e-43 180.6 188 59.0
TPR.G17016 Trifolium pratense HOM05D005519 ORTHO05D006423 1.1e-43 180.6 187 62.6
CANSAT25G1666 Cannabis sativa HOM05D005519 ORTHO05D006423 2.4e-43 179.5 196 63.8
Lalb_Chr03g0035541 Lupinus albus HOM05D005519 ORTHO05D006423 2.4e-43 179.5 194 55.7
Sopen12g029280 Solanum pennellii HOM05D005519 ORTHO05D006423 3.1e-43 179.1 188 58.5
CAN.G26.8 Capsicum annuum HOM05D005519 ORTHO05D006423 5.3e-43 178.3 196 66.3
Gohir.D02G068600 Gossypium hirsutum HOM05D005519 ORTHO05D006423 9.1e-43 177.6 186 69.4
vmacro01488 Vaccinium macrocarpon HOM05D005519 ORTHO05D006423 1.2e-42 177.2 190 63.7
Rhsim11G0087200 Rhododendron simsii HOM05D005519 ORTHO05D006423 2.0e-42 176.4 194 72.7
Gorai.005G077500 Gossypium raimondii HOM05D005519 ORTHO05D006423 2.6e-42 176.0 186 69.9
Nn5g28816 Nelumbo nucifera HOM05D005519 ORTHO05D006423 2.6e-42 176.0 194 71.6
Sed0015682 Sechium edule HOM05D005519 ORTHO05D006423 2.6e-42 176.0 141 73.8
Ah.05g168160 Amaranthus hybridus HOM05D005519 ORTHO05D006423 4.5e-42 175.3 189 64.6
CAN.G495.8 Capsicum annuum HOM05D005519 ORTHO05D006423 5.9e-42 174.9 188 66.0
Medtr1g098280 Medicago truncatula HOM05D005519 ORTHO05D006423 5.9e-42 174.9 187 59.9
Ciclev10002625m.g Citrus clementina HOM05D005519 ORTHO05D006423 7.7e-42 174.5 194 69.6
SGA_v2.0_scaffold108G30869 Striga asiatica HOM05D005519 ORTHO05D006423 1.0e-41 174.1 140 75.7
Atru.chr13.2018 Acer truncatum HOM05D005519 ORTHO05D006423 1.3e-41 173.7 191 68.1
ClCG08G008840 Citrullus lanatus HOM05D005519 ORTHO05D006423 2.2e-41 172.9 151 74.8
Lsat_1_v5_gn_6_101660 Lactuca sativa HOM05D005519 ORTHO05D006423 2.2e-41 172.9 191 61.3
AL1G48440 Arabidopsis lyrata HOM05D005519 ORTHO05D006423 5.0e-41 171.8 186 67.2
THA.LOC104806763 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 5.0e-41 171.8 186 64.0
AT1G34000 Arabidopsis thaliana HOM05D005519 ORTHO05D006423 8.5e-41 171.0 186 65.6
Migut.C00964 Erythranthe guttata HOM05D005519 ORTHO05D006423 8.5e-41 171.0 192 59.9
Lj7A382T71 Lonicera japonica HOM05D005519 ORTHO05D006423 1.1e-40 170.6 186 65.1
DCAR_001160 Daucus carota HOM05D005519 ORTHO05D006423 1.5e-40 170.2 193 53.9
CSS0002205 Camellia sinensis var. sinensis HOM05D005519 ORTHO05D006423 1.9e-40 169.9 187 67.9
CsaV3_6G005050 Cucumis sativus L. HOM05D005519 ORTHO05D006423 1.9e-40 169.9 189 70.9
A08p08390 Brassica napus HOM05D005519 ORTHO05D006423 2.5e-40 169.5 186 64.5
BraA08t32855Z Brassica rapa HOM05D005519 ORTHO05D006423 2.5e-40 169.5 186 64.5
Aa31LG6G8220 Aethionema arabicum HOM05D005519 ORTHO05D006423 3.2e-40 169.1 186 62.4
CARHR033380 Cardamine hirsuta HOM05D005519 ORTHO05D006423 5.5e-40 168.3 186 69.9
Migut.N03201 Erythranthe guttata HOM05D005519 ORTHO05D006423 7.2e-40 167.9 191 64.4
Thhalv10008704m.g Eutrema salsugineum HOM05D005519 ORTHO05D006423 7.2e-40 167.9 186 67.7
Lsat_1_v5_gn_9_42101 Lactuca sativa HOM05D005519 ORTHO05D006423 1.2e-39 167.2 186 62.4
BcaB07g33022 Brassica carinata HOM05D005519 ORTHO05D006423 2.7e-39 166.0 186 65.6
Lj4A703G50 Lonicera japonica HOM05D005519 ORTHO05D006423 3.6e-39 165.6 153 71.9
GSVIVG01034578001 Vitis vinifera HOM05D005519 ORTHO05D006423 4.7e-39 165.2 85 94.1
BcaB04g17909 Brassica carinata HOM05D005519 ORTHO05D006423 6.1e-39 164.9 186 59.7
C06p12090 Brassica napus HOM05D005519 ORTHO05D006423 6.1e-39 164.9 186 66.7
BraA09t38789Z Brassica rapa HOM05D005519 ORTHO05D006423 6.1e-39 164.9 186 63.4
Carub.0001s3208 Capsella rubella HOM05D005519 ORTHO05D006423 6.1e-39 164.9 187 66.8
A09p32470 Brassica napus HOM05D005519 ORTHO05D006423 8.0e-39 164.5 186 64.0
PSO541G5828 Papaver somniferum HOM05D005519 ORTHO05D006423 1.4e-38 163.7 190 55.8
THA.LOC104825113 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 1.4e-38 163.7 186 58.6
BolC8t47881H Brassica oleracea HOM05D005519 ORTHO05D006423 1.8e-38 163.3 186 62.9
unitig_26.g9895 Utricularia gibba HOM05D005519 ORTHO05D006423 1.8e-38 163.3 181 59.7
BolC6t36346H Brassica oleracea HOM05D005519 ORTHO05D006423 2.3e-38 162.9 186 59.7
MBI04_g08940_MAGBIO Magnolia biondii HOM05D005519 ORTHO05D006423 4.0e-38 162.2 186 61.8
BcaC08g43825 Brassica carinata HOM05D005519 ORTHO05D006423 5.2e-38 161.8 186 59.1
ECA246G0665 Erigeron canadensis HOM05D003947 ORTHO05D006423 5.2e-38 161.8 100 83.0
Sc26g0002910 Simmondsia chinensis HOM05D005519 ORTHO05D006423 8.8e-38 161.0 140 67.9
HPP92_000679 Vanilla planifolia HOM05D005519 ORTHO05D006423 8.8e-38 161.0 153 62.7
ATR0580G316 Amborella trichopoda HOM05D005519 ORTHO05D006423 2.6e-37 159.5 141 71.6
AUR62026639 Chenopodium quinoa HOM05D003947 ORTHO05D004614 7.5e-37 157.9 96 81.2
PSO675G0400 Papaver somniferum HOM05D005519 ORTHO05D006423 1.3e-36 157.1 191 61.3
Nn1g06007 Nelumbo nucifera HOM05D005519 ORTHO05D006423 2.2e-36 156.4 171 71.9
CDE04G2354 Ceratophyllum demersum HOM05D005519 ORTHO05D006423 4.8e-36 155.2 189 54.5
HanXRQChr11g0320251 Helianthus annuus HOM05D005519 ORTHO05D006423 4.5e-34 148.7 78 91.0
Sed0018725 Sechium edule HOM05D005519 ORTHO05D006423 5.9e-34 148.3 150 57.3
MSTRG.1105 Avicennia marina HOM05D000084 ORTHO05D006423 1.0e-33 147.5 125 72.8
Sp1g29260 Schrenkiella parvula HOM05D005519 ORTHO05D006423 2.2e-33 146.4 220 56.4
Zm00001eb160790 Zea mays HOM05D005519 ORTHO05D006423 2.9e-33 146.0 206 56.8
Zm00001eb357520 Zea mays HOM05D005519 ORTHO05D006423 6.5e-33 144.8 209 45.0
AUR62034898 Chenopodium quinoa HOM05D005519 ORTHO05D006423 6.8e-30 134.8 75 88.0
Os01g0589800 Oryza sativa ssp. japonica HOM05D005519 ORTHO05D006423 2.0e-29 133.3 70 90.0
COL.COLO4_03361 Corchorus olitorius HOM05D005519 ORTHO05D006423 3.7e-28 129.0 69 84.1
AagrBONN_evm.TU.Sc2ySwM_117.629 Anthoceros agrestis HOM05D005519 ORTHO05D006423 7.2e-24 114.8 151 60.3
Mapoly0065s0010 Marchantia polymorpha HOM05D005519 ORTHO05D006423 3.6e-23 112.5 82 64.6
Dinv41044 Davidia involucrata HOM05D005519 ORTHO05D006423 6.1e-23 111.7 149 68.5
Actinidia17771 Actinidia chinensis HOM05D005519 ORTHO05D006423 1.5e-21 107.1 102 55.9
A05p24090 Brassica napus HOM05D011378 ORTHO05D006423 4.4e-21 105.5 68 75.0
Oeu051280.1 Olea europaea HOM05D005519 ORTHO05D006423 4.4e-21 105.5 154 59.1
BraA05t21288Z Brassica rapa HOM05D003947 ORTHO05D006423 9.8e-21 104.4 73 74.0
SMO139G0065 Selaginella moellendorffii HOM05D005519 ORTHO05D006423 1.3e-20 104.0 95 53.7
Hund30143 Selenicereus undatus HOM05D005519 ORTHO05D006423 3.7e-20 102.4 170 54.1
CBR_g32244 Chara braunii HOM05D005519 ORTHO05D006423 1.4e-19 100.5 80 60.0
MELO3C029825.2 Cucumis melo HOM05D005519 ORTHO05D006423 1.4e-19 100.5 113 64.6
Cre06.g251150 Chlamydomonas reinhardtii HOM05D005519 ORTHO05D006423 2.7e-18 96.3 82 58.5
MCO05G699 Micromonas commoda HOM05D005519 ORTHO05D006423 1.3e-17 94.0 80 55.0
Eucgr.L00901 Eucalyptus grandis HOM05D005519 ORTHO05D006423 3.9e-17 92.4 143 57.3
CSS0025090 Camellia sinensis var. sinensis HOM05D005519 ORTHO05D006423 9.5e-16 87.8 52 76.9
PRCOL_00003386 Prasinoderma coloniale HOM05D005519 ORTHO05D006423 7.8e-10 68.2 64 54.7
Pp3c1_8300 Physcomitrium patens HOM05D005519 ORTHO05D006423 2.8e-07 59.7 39 61.5
Pp3c2_26700 Physcomitrium patens HOM05D005519 ORTHO05D006423 3.6e-07 59.3 108 50.0


User provided reference genes

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