Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g13020 Fragaria vesca HOM05D005921 ORTHO05D007374 1.2e-280 969.1 472 100.0
FAN24G0054 Fragaria x ananassa HOM05D005921 ORTHO05D007374 1.6e-277 958.7 473 98.7
FAN27G2380 Fragaria x ananassa HOM05D005921 ORTHO05D007374 8.2e-266 919.8 494 92.7
FAN15G3525 Fragaria x ananassa HOM05D005921 ORTHO05D007374 2.0e-256 888.6 497 89.3
RcHm_v2.0_Chr6g0274201 Rosa chinensis HOM05D005921 ORTHO05D007374 4.9e-242 840.9 485 86.6
FAN20G2564 Fragaria x ananassa HOM05D005921 ORTHO05D007374 7.0e-241 837.0 497 85.5
Prupe.8G040700 Prunus persica HOM05D005921 ORTHO05D007374 3.0e-215 751.9 485 76.7
MD05G1033700 Malus domestica HOM05D005921 ORTHO05D007374 4.7e-213 744.6 486 77.0
CiPaw.15G012300 Carya illinoinensis HOM05D005921 ORTHO05D007374 1.8e-188 662.9 475 69.7
Cfa018279 Carpinus fangiana HOM05D005921 ORTHO05D007374 6.4e-186 654.4 478 66.9
Thecc.08G159700 Theobroma cacao HOM05D005921 ORTHO05D007374 1.9e-185 652.9 486 68.5
GSVIVG01001409001 Vitis vinifera HOM05D005921 ORTHO05D007374 1.6e-184 649.8 487 68.0
Hma1.2p1_0358F.1_g134840 Hydrangea macrophylla HOM05D005921 ORTHO05D007374 1.0e-183 647.1 492 64.6
Potri.005G197000 Populus trichocarpa HOM05D005921 ORTHO05D007374 6.7e-183 644.4 477 67.1
Eucgr.F04188 Eucalyptus grandis HOM05D005921 ORTHO05D007374 2.5e-182 642.5 495 66.3
Rhsim11G0087800 Rhododendron simsii HOM05D005921 ORTHO05D007374 1.3e-181 640.2 488 65.6
Atru.chr13.2001 Acer truncatum HOM05D005921 ORTHO05D007374 2.8e-181 639.0 481 66.3
CANSAT25G0895 Cannabis sativa HOM05D005921 ORTHO05D007374 8.2e-181 637.5 497 65.2
Manes.02G183400 Manihot esculenta HOM05D005921 ORTHO05D007374 4.0e-180 635.2 470 68.1
ClCG08G007340 Citrullus lanatus HOM05D005921 ORTHO05D007374 2.6e-179 632.5 491 64.2
Gorai.009G286300 Gossypium raimondii HOM05D005921 ORTHO05D007374 2.6e-179 632.5 475 67.4
Gohir.A05G270866 Gossypium hirsutum HOM05D005921 ORTHO05D007374 7.6e-179 630.9 440 70.7
Sed0007537 Sechium edule HOM05D005921 ORTHO05D007374 1.3e-178 630.2 487 63.7
CsaV3_6G004990 Cucumis sativus L. HOM05D005921 ORTHO05D007374 1.9e-177 626.3 488 63.3
CSS0006668 Camellia sinensis var. sinensis HOM05D005921 ORTHO05D007374 4.2e-177 625.2 420 72.1
Glyma.10G221400 Glycine max HOM05D005921 ORTHO05D007374 4.2e-177 625.2 495 62.0
Cc10_g15280 Coffea canephora HOM05D005921 ORTHO05D007374 5.5e-177 624.8 502 62.5
vmacro01494 Vaccinium macrocarpon HOM05D005921 ORTHO05D007374 4.6e-176 621.7 462 67.1
TAR381G0629 Trochodendron aralioides HOM05D005921 ORTHO05D007374 7.9e-176 620.9 471 64.8
Ca_10662_v3 Cicer arietinum L. HOM05D005921 ORTHO05D007374 3.0e-175 619.0 492 63.6
Medtr1g097955 Medicago truncatula HOM05D005921 ORTHO05D007374 5.1e-175 618.2 480 64.4
TWI32G1095 Tripterygium wilfordii HOM05D005921 ORTHO05D007374 6.7e-175 617.8 495 63.8
Duzib116G0900 Durio zibethinus HOM05D005921 ORTHO05D007374 1.1e-174 617.1 408 72.1
Glyma.20G170200 Glycine max HOM05D005921 ORTHO05D007374 1.9e-174 616.3 494 61.3
Eucgr.L02800 Eucalyptus grandis HOM05D005921 ORTHO05D007374 7.4e-174 614.4 545 60.2
Lj5g0014499 Lotus japonicus HOM05D005921 ORTHO05D007374 2.2e-173 612.8 494 61.7
PGR044G0568 Punica granatum HOM05D005921 ORTHO05D007374 2.2e-173 612.8 500 62.0
Psat0s899g0040 Pisum sativum HOM05D005921 ORTHO05D007374 4.8e-173 611.7 483 62.1
TPR.G17011 Trifolium pratense HOM05D005921 ORTHO05D007374 4.8e-173 611.7 496 61.9
HanXRQChr02g0042431 Helianthus annuus HOM05D005921 ORTHO05D007374 4.1e-172 608.6 476 62.6
Sc02g0003820 Simmondsia chinensis HOM05D005921 ORTHO05D007374 6.9e-172 607.8 452 66.6
EL10Ac1g01606 Beta vulgaris HOM05D005921 ORTHO05D007374 9.0e-172 607.4 449 65.9
VMungo0720G0456 Vigna mungo HOM05D005921 ORTHO05D007374 1.2e-171 607.1 504 60.9
arahy.Tifrunner.gnm1.ann1.9JVG50 Arachis hypogaea HOM05D005921 ORTHO05D007374 1.5e-171 606.7 498 61.0
PSO675G2388 Papaver somniferum HOM05D005921 ORTHO05D007374 2.0e-171 606.3 479 61.4
Lalb_Chr06g0161731 Lupinus albus HOM05D005921 ORTHO05D007374 2.6e-171 605.9 479 63.5
Sopen04g027990 Solanum pennellii HOM05D005921 ORTHO05D007374 2.6e-171 605.9 487 63.0
CAN.G1252.3 Capsicum annuum HOM05D005921 ORTHO05D007374 5.9e-171 604.7 474 63.1
A02p17260 Brassica napus HOM05D005921 ORTHO05D007374 1.3e-170 603.6 474 63.3
Ciclev10003457m.g Citrus clementina HOM05D005921 ORTHO05D007374 1.3e-170 603.6 435 68.3
COL.COLO4_13778 Corchorus olitorius HOM05D005921 ORTHO05D007374 1.7e-170 603.2 519 59.7
MBI01_g34168_MAGBIO Magnolia biondii HOM05D005921 ORTHO05D007374 2.2e-170 602.8 488 62.3
AT1G71696 Arabidopsis thaliana HOM05D005921 ORTHO05D007374 3.8e-170 602.1 480 62.9
arahy.Tifrunner.gnm1.ann1.TV90AE Arachis hypogaea HOM05D005921 ORTHO05D007374 6.5e-170 601.3 454 64.3
Solyc04g072010.3 Solanum lycopersicum HOM05D005921 ORTHO05D007374 8.5e-170 600.9 487 62.6
BcaC03g15284 Brassica carinata HOM05D005921 ORTHO05D007374 1.1e-169 600.5 474 63.5
Aqoxy6G00427 Aquilegia oxysepala HOM05D005921 ORTHO05D007374 1.4e-169 600.1 490 61.4
AL2G31250 Arabidopsis lyrata HOM05D005921 ORTHO05D007374 1.9e-169 599.7 480 62.3
BcaB05g24658 Brassica carinata HOM05D005921 ORTHO05D007374 1.2e-168 597.0 481 62.2
Lalb_Chr02g0141581 Lupinus albus HOM05D005921 ORTHO05D007374 1.6e-168 596.7 441 66.2
Sp5g26720 Schrenkiella parvula HOM05D005921 ORTHO05D007374 6.1e-168 594.7 491 61.1
Carub.0002s1845 Capsella rubella HOM05D005921 ORTHO05D007374 1.0e-167 594.0 476 62.0
Migut.N02950 Erythranthe guttata HOM05D005921 ORTHO05D007374 1.8e-167 593.2 497 60.2
Aa31LG4G8950 Aethionema arabicum HOM05D005921 ORTHO05D007374 3.0e-167 592.4 462 62.6
Hund26678 Selenicereus undatus HOM05D005921 ORTHO05D007374 3.9e-167 592.0 524 57.8
C02p28900 Brassica napus HOM05D005921 ORTHO05D007374 8.8e-167 590.9 490 61.4
MSTRG.24492 Avicennia marina HOM05D005921 ORTHO05D007374 1.4e-164 583.6 500 59.8
Thhalv10018610m.g Eutrema salsugineum HOM05D005921 ORTHO05D007374 2.0e-163 579.7 415 66.7
Lsat_1_v5_gn_1_5181 Lactuca sativa HOM05D005921 ORTHO05D007374 2.6e-163 579.3 467 60.6
CDE04G2034 Ceratophyllum demersum HOM05D005921 ORTHO05D007374 4.5e-163 578.6 495 58.6
Lj4A704G63 Lonicera japonica HOM05D005921 ORTHO05D007374 1.7e-162 576.6 401 69.1
MSTRG.22109 Avicennia marina HOM05D005921 ORTHO05D007374 2.5e-161 572.8 477 59.3
ECA247G3881 Erigeron canadensis HOM05D005921 ORTHO05D007374 2.1e-160 569.7 367 71.1
Gohir.D05G273101 Gossypium hirsutum HOM05D005921 ORTHO05D007374 2.1e-160 569.7 475 62.7
Peaxi162Scf00360g00056 Petunia axillaris HOM05D005921 ORTHO05D007374 2.7e-160 569.3 456 61.8
unitig_578.g16229 Utricularia gibba HOM05D005921 ORTHO05D007374 3.3e-158 562.4 433 62.1
Phvul.007G083600 Phaseolus vulgaris HOM05D005921 ORTHO05D007374 1.7e-157 560.1 405 66.2
MELO3C019977.2 Cucumis melo HOM05D005921 ORTHO05D007374 4.1e-156 555.4 388 67.8
Zm00001eb377250 Zea mays HOM05D005921 ORTHO05D007374 9.1e-156 554.3 463 58.5
Lj7A383T42 Lonicera japonica HOM05D005921 ORTHO05D007374 2.6e-155 552.7 444 63.7
Ah.05g168190 Amaranthus hybridus HOM05D005921 ORTHO05D007374 4.5e-155 552.0 405 66.2
SalBow6G1744 Salvia bowleyana HOM05D005921 ORTHO05D007374 4.5e-155 552.0 507 55.6
CARHR291100 Cardamine hirsuta HOM05D005921 ORTHO05D007374 4.2e-153 545.4 397 65.2
Nn5g28835 Nelumbo nucifera HOM05D005921 ORTHO05D007374 5.9e-147 525.0 410 63.2
ATR1120G060 Amborella trichopoda HOM05D004165 ORTHO05D005063 1.3e-146 523.9 375 64.5
Hma1.2p1_0358F.1_g134830 Hydrangea macrophylla HOM05D005921 ORTHO05D007374 4.2e-145 518.8 343 72.6
AUR62034891 Chenopodium quinoa HOM05D005921 ORTHO05D007374 1.4e-143 513.8 376 64.9
Sabra05G0149900 Salix brachista HOM05D005921 ORTHO05D007374 4.4e-142 508.8 481 57.6
DCAR_001188 Daucus carota HOM05D005921 ORTHO05D007374 2.5e-137 493.0 307 72.3
SGA_v2.0_scaffold54G19682 Striga asiatica HOM05D005921 ORTHO05D007374 1.2e-136 490.7 461 55.5
AUR62026635 Chenopodium quinoa HOM05D005921 ORTHO05D007374 2.8e-133 479.6 394 60.7
Nitab4.5_0013157g0020 Nicotiana tabacum HOM05D005921 ORTHO05D007374 1.2e-131 474.2 358 64.2
SMO116G0063 Selaginella moellendorffii HOM05D005921 ORTHO05D007374 1.6e-128 463.8 357 59.4
Nitab4.5_0000099g0240 Nicotiana tabacum HOM05D005921 ORTHO05D007374 8.9e-127 458.0 519 49.7
AagrBONN_evm.TU.Sc2ySwM_344.3190 Anthoceros agrestis HOM05D005921 ORTHO05D007374 2.4e-124 449.9 368 56.0
Mapoly0096s0032 Marchantia polymorpha HOM05D005921 ORTHO05D007374 5.4e-124 448.7 358 56.7
Cpa.g.sc26.80 Carica papaya HOM05D005921 ORTHO05D007374 1.5e-121 440.7 329 65.7
Pp3c16_14030 Physcomitrium patens HOM05D005921 ORTHO05D007374 4.3e-121 439.1 340 57.4
HPP92_000681 Vanilla planifolia HOM05D005921 ORTHO05D007374 7.3e-121 438.3 425 54.1
Ciclev10003529m.g Citrus clementina HOM05D005921 ORTHO05D007374 3.0e-119 433.0 378 60.1
Haze_17806 Corylus avellana HOM05D005921 ORTHO05D007374 1.7e-114 417.2 268 74.3
QL02p037958 Quercus lobata HOM05D005921 ORTHO05D007374 1.4e-95 354.4 246 72.4
QL02p037460 Quercus lobata HOM05D005921 ORTHO05D007374 6.8e-95 352.1 246 72.0
Pp3c6_12100 Physcomitrium patens HOM05D005921 ORTHO05D007374 2.4e-92 343.6 359 48.7
HPP92_000638 Vanilla planifolia HOM05D005921 ORTHO05D007374 6.6e-90 335.5 320 54.4
CBR_g30849 Chara braunii HOM05D005921 ORTHO05D007374 1.9e-89 334.0 355 45.4
BraA02t06774Z Brassica rapa HOM05D005921 ORTHO05D007374 1.2e-88 331.3 236 67.8
BolC2t08937H Brassica oleracea HOM05D005921 ORTHO05D007374 8.1e-88 328.6 236 67.8
Oeu017621.1 Olea europaea HOM05D005921 ORTHO05D007374 1.6e-83 314.3 179 77.7
SHI09099 Sapria himalayana HOM05D005921 ORTHO05D007374 2.4e-79 300.4 291 54.0
QL02p037446 Quercus lobata HOM05D005921 ORTHO05D007374 2.0e-78 297.4 243 60.1
QL02p037946 Quercus lobata HOM05D005921 ORTHO05D007374 2.0e-78 297.4 243 60.1
MCO15G195 Micromonas commoda HOM05D005921 ORTHO05D007374 6.4e-69 265.8 392 36.7
PRCOL_00005633 Prasinoderma coloniale HOM05D005921 ORTHO05D007374 6.9e-63 245.7 328 40.2
Os06g0144600 Oryza sativa ssp. japonica HOM05D005921 ORTHO05D007374 6.7e-58 229.2 188 62.8
BolC2t08936H Brassica oleracea HOM05D005921 ORTHO05D007374 1.1e-57 228.4 229 54.6
BraA02t06773Z Brassica rapa HOM05D005921 ORTHO05D007374 3.3e-57 226.9 222 55.0
SEGI_33860 Sequoiadendron giganteum HOM05D005921 ORTHO05D007374 8.2e-56 222.2 234 50.9
Zm00001eb035610 Zea mays HOM05D005921 ORTHO05D007374 2.0e-54 217.6 189 58.7
Zm00001eb246880 Zea mays HOM05D005921 ORTHO05D007374 2.9e-45 187.2 108 75.9
Cre07.g335900 Chlamydomonas reinhardtii HOM05D005921 ORTHO05D007374 4.1e-39 166.8 341 34.3
SEGI_16149 Sequoiadendron giganteum HOM05D005921 ORTHO05D007374 1.1e-36 158.7 104 62.5
Cre06.g309450 Chlamydomonas reinhardtii HOM05D005921 ORTHO05D007374 8.2e-32 142.5 367 29.7
MD10G1034600 Malus domestica HOM05D005921 ORTHO05D007374 1.6e-30 138.3 118 61.9
SHI09097 Sapria himalayana HOM05D005921 ORTHO05D007374 4.5e-30 136.7 98 65.3
Duzib093G1718 Durio zibethinus HOM05D005921 ORTHO05D007374 1.1e-28 132.1 73 82.2
Pp3c27_7150 Physcomitrium patens HOM05D005921 ORTHO05D007374 1.6e-19 101.7 377 25.7
Prupe.8G040900 Prunus persica HOM05D005921 ORTHO05D007374 2.1e-19 101.3 94 62.8
Zm00001eb035620 Zea mays HOM05D005921 ORTHO05D007374 9.8e-17 92.4 55 67.3


User provided reference genes

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