Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g12791 Fragaria vesca HOM05D005543 ORTHO05D006584 4.5e-103 377.9 183 100.0
FAN15G0123 Fragaria x ananassa HOM05D005543 ORTHO05D006584 1.0e-99 366.7 183 96.7
FAN24G1753 Fragaria x ananassa HOM05D005543 ORTHO05D006584 1.4e-99 366.3 183 97.8
RcHm_v2.0_Chr6g0273681 Rosa chinensis HOM05D005543 ORTHO05D006584 6.5e-86 320.9 180 85.0
MD05G1036200 Malus domestica HOM05D005543 ORTHO05D006584 3.5e-79 298.5 189 76.7
MD10G1038300 Malus domestica HOM05D005543 ORTHO05D006584 4.5e-79 298.1 191 77.0
Prupe.8G044500 Prunus persica HOM05D005543 ORTHO05D006584 2.0e-74 282.7 188 73.4
Thecc.08G164300 Theobroma cacao HOM05D005543 ORTHO05D006584 4.1e-72 275.0 187 69.0
Gorai.009G259700 Gossypium raimondii HOM05D005543 ORTHO05D006584 9.2e-72 273.9 189 70.4
Gohir.D05G248600 Gossypium hirsutum HOM05D005543 ORTHO05D006584 1.2e-71 273.5 189 70.4
Gohir.A05G247100 Gossypium hirsutum HOM05D005543 ORTHO05D006584 7.8e-71 270.8 191 68.6
Duzib116G0276 Durio zibethinus HOM05D005543 ORTHO05D006584 1.7e-70 269.6 189 68.3
Eucgr.F04165 Eucalyptus grandis HOM05D005543 ORTHO05D006584 1.1e-69 266.9 188 67.6
Hma1.2p1_0276F.1_g110980 Hydrangea macrophylla HOM05D005543 ORTHO05D006584 1.1e-69 266.9 188 67.0
TWI53G2072 Tripterygium wilfordii HOM05D005543 ORTHO05D006584 5.6e-69 264.6 191 67.0
COL.COLO4_13722 Corchorus olitorius HOM05D005543 ORTHO05D006584 1.6e-68 263.1 188 66.0
CiPaw.16G007100 Carya illinoinensis HOM05D005543 ORTHO05D006584 2.1e-68 262.7 185 69.2
TAR625G0687 Trochodendron aralioides HOM05D005543 ORTHO05D006584 2.8e-68 262.3 191 66.0
CANSAT25G2335 Cannabis sativa HOM05D005543 ORTHO05D006584 6.2e-68 261.2 191 67.0
Haze_17839 Corylus avellana HOM05D005543 ORTHO05D006584 6.2e-68 261.2 183 69.4
THA.LOC104800097 Tarenaya hassleriana HOM05D005543 ORTHO05D006584 6.2e-68 261.2 186 67.2
Manes.02G185600 Manihot esculenta HOM05D005543 ORTHO05D006584 1.1e-67 260.4 192 65.1
Potri.002G062300 Populus trichocarpa HOM05D005543 ORTHO05D006584 1.4e-67 260.0 188 66.5
Haze_17833 Corylus avellana HOM05D005543 ORTHO05D006584 2.3e-67 259.2 183 68.9
Nn5g28876 Nelumbo nucifera HOM05D005543 ORTHO05D006584 5.2e-67 258.1 188 64.9
MELO3C019959.2 Cucumis melo HOM05D005543 ORTHO05D006584 6.8e-67 257.7 184 67.4
ClCG08G007180 Citrullus lanatus HOM05D005543 ORTHO05D006584 1.2e-66 256.9 184 67.4
PGSC0003DMG400031139 Solanum tuberosum HOM05D005543 ORTHO05D006584 1.5e-66 256.5 188 66.0
PGR102G0915 Punica granatum HOM05D005543 ORTHO05D006584 2.6e-66 255.8 177 66.7
Dinv41020 Davidia involucrata HOM05D005543 ORTHO05D006584 7.5e-66 254.2 193 65.3
CSS0010673 Camellia sinensis var. sinensis HOM05D005543 ORTHO05D006584 1.3e-65 253.4 166 71.1
Lj2g0006240 Lotus japonicus HOM05D005543 ORTHO05D006584 1.3e-65 253.4 179 67.0
Phvul.004G088200 Phaseolus vulgaris HOM05D005543 ORTHO05D006584 1.7e-65 253.1 194 63.4
Sopen04g028290 Solanum pennellii HOM05D005543 ORTHO05D006584 3.7e-65 251.9 177 67.8
Solyc04g072120.2 Solanum lycopersicum HOM05D005543 ORTHO05D006584 6.4e-65 251.1 177 67.2
Aa31LG4G8860 Aethionema arabicum HOM05D005543 ORTHO05D006584 1.1e-64 250.4 193 63.7
Actinidia17758 Actinidia chinensis HOM05D005543 ORTHO05D006584 2.4e-64 249.2 188 67.6
Glyma.16G160100 Glycine max HOM05D005543 ORTHO05D006584 2.4e-64 249.2 193 62.7
MSTRG.22116 Avicennia marina HOM05D005543 ORTHO05D006584 3.2e-64 248.8 190 62.1
Sabra05G0151400 Salix brachista HOM05D005543 ORTHO05D006584 3.2e-64 248.8 186 63.4
GSVIVG01013678001 Vitis vinifera HOM05D005543 ORTHO05D006584 3.2e-64 248.8 184 66.3
arahy.Tifrunner.gnm1.ann1.FFL75L Arachis hypogaea HOM05D005543 ORTHO05D006584 5.4e-64 248.1 185 63.8
Nitab4.5_0001000g0150 Nicotiana tabacum HOM05D005543 ORTHO05D006584 5.4e-64 248.1 176 64.8
Peaxi162Scf00226g00217 Petunia axillaris HOM05D005543 ORTHO05D006584 5.4e-64 248.1 169 66.3
Sabra02G0050300 Salix brachista HOM05D005543 ORTHO05D006584 5.4e-64 248.1 186 62.9
Lalb_Chr06g0161821 Lupinus albus HOM05D005543 ORTHO05D006584 9.2e-64 247.3 176 64.8
Sp5g26800 Schrenkiella parvula HOM05D005543 ORTHO05D006584 9.2e-64 247.3 181 65.2
SpUn0095_0030 Schrenkiella parvula HOM05D005543 ORTHO05D006584 9.2e-64 247.3 181 65.2
Atru.chr13.1972 Acer truncatum HOM05D005543 ORTHO05D006584 1.2e-63 246.9 180 62.8
Thhalv10019179m.g Eutrema salsugineum HOM05D005543 ORTHO05D006584 2.0e-63 246.1 189 63.0
PSO541G4578 Papaver somniferum HOM05D005543 ORTHO05D006584 2.0e-63 246.1 180 62.2
HanXRQChr11g0320551 Helianthus annuus HOM05D005543 ORTHO05D006584 2.7e-63 245.7 176 69.3
VMungo0464G0571 Vigna mungo HOM05D005543 ORTHO05D006584 3.5e-63 245.4 174 66.1
arahy.Tifrunner.gnm1.ann1.XA0Q13 Arachis hypogaea HOM05D005543 ORTHO05D006584 6.0e-63 244.6 185 62.7
Nitab4.5_0002585g0010 Nicotiana tabacum HOM05D005543 ORTHO05D006584 1.3e-62 243.4 165 67.3
Nitab4.5_0000433g0010 Nicotiana tabacum HOM05D005543 ORTHO05D006584 3.0e-62 242.3 176 63.6
PSO675G1818 Papaver somniferum HOM05D005543 ORTHO05D006584 3.0e-62 242.3 181 61.3
SGA_v2.0_scaffold166G38393 Striga asiatica HOM05D005543 ORTHO05D006584 3.9e-62 241.9 189 60.8
Lsat_1_v5_gn_9_42581 Lactuca sativa HOM05D005543 ORTHO05D006584 5.0e-62 241.5 170 68.2
Sed0022332 Sechium edule HOM05D005543 ORTHO05D006584 8.6e-62 240.7 194 61.9
Sc20g0003140 Simmondsia chinensis HOM05D005543 ORTHO05D006584 8.6e-62 240.7 166 66.9
Psat0s2687g0120 Pisum sativum HOM05D005543 ORTHO05D006584 1.1e-61 240.4 174 64.4
A07p30600 Brassica napus HOM05D005543 ORTHO05D006584 1.5e-61 240.0 189 62.4
BraA07t31358Z Brassica rapa HOM05D005543 ORTHO05D006584 1.5e-61 240.0 183 64.5
AT1G71780 Arabidopsis thaliana HOM05D005543 ORTHO05D006584 1.9e-61 239.6 181 64.1
Cc10_g06390 Coffea canephora HOM05D005543 ORTHO05D006584 1.9e-61 239.6 189 63.5
TAR381G0628 Trochodendron aralioides HOM05D005543 ORTHO05D006584 1.9e-61 239.6 154 71.4
BraA07t30695Z Brassica rapa HOM05D005543 ORTHO05D006584 2.5e-61 239.2 189 62.4
BcaC08g46604 Brassica carinata HOM05D005543 ORTHO05D006584 3.3e-61 238.8 183 64.5
C06p45840 Brassica napus HOM05D005543 ORTHO05D006584 5.6e-61 238.0 183 64.5
BcaB03g15617 Brassica carinata HOM05D005543 ORTHO05D006584 7.3e-61 237.7 183 62.8
AL2G31350 Arabidopsis lyrata HOM05D005543 ORTHO05D006584 1.6e-60 236.5 186 62.4
BolC6t39636H Brassica oleracea HOM05D005543 ORTHO05D006584 1.6e-60 236.5 183 63.9
Medtr6g034680 Medicago truncatula HOM05D005543 ORTHO05D006584 2.1e-60 236.1 178 62.4
BcaC08g45757 Brassica carinata HOM05D005543 ORTHO05D006584 6.2e-60 234.6 189 61.9
C06p35380 Brassica napus HOM05D005543 ORTHO05D006584 6.2e-60 234.6 189 61.9
ECA232G2646 Erigeron canadensis HOM05D005543 ORTHO05D006584 6.2e-60 234.6 167 66.5
BolC6t38643H Brassica oleracea HOM05D005543 ORTHO05D006584 1.1e-59 233.8 189 62.4
CARHR291000 Cardamine hirsuta HOM05D005543 ORTHO05D006584 1.1e-59 233.8 187 61.5
A07p37930 Brassica napus HOM05D005543 ORTHO05D006584 2.3e-59 232.6 183 63.9
Peaxi162Scf00160g01739 Petunia axillaris HOM05D005543 ORTHO05D006584 3.1e-59 232.3 155 68.4
Hund17502 Selenicereus undatus HOM05D005543 ORTHO05D006584 4.0e-59 231.9 173 63.6
Carub.0002s1854 Capsella rubella HOM05D005543 ORTHO05D006584 5.2e-59 231.5 187 59.9
DCAR_009611 Daucus carota HOM05D005543 ORTHO05D006584 6.8e-59 231.1 173 61.3
Ca_04656_v3 Cicer arietinum L. HOM05D005543 ORTHO05D006584 8.9e-59 230.7 177 62.1
HPP92_007671 Vanilla planifolia HOM05D005543 ORTHO05D006584 1.5e-58 229.9 188 60.1
EL10Ac1g01633 Beta vulgaris HOM05D005543 ORTHO05D006584 2.0e-58 229.6 166 61.4
Ciclev10002600m.g Citrus clementina HOM05D005543 ORTHO05D006584 2.0e-58 229.6 173 64.7
Nitab4.5_0004541g0020 Nicotiana tabacum HOM05D005543 ORTHO05D006584 2.0e-58 229.6 165 64.8
Sopen12g029440 Solanum pennellii HOM05D005543 ORTHO05D006584 2.6e-58 229.2 150 68.0
Ah.05g168360 Amaranthus hybridus HOM05D005543 ORTHO05D006584 4.4e-58 228.4 159 62.9
DCAR_019968 Daucus carota HOM05D005543 ORTHO05D006584 5.8e-58 228.0 170 61.2
AUR62034923 Chenopodium quinoa HOM05D005543 ORTHO05D006584 9.9e-58 227.3 159 62.3
Solyc12g056760.2 Solanum lycopersicum HOM05D005543 ORTHO05D006584 1.7e-57 226.5 150 66.7
Lj7A386T90 Lonicera japonica HOM05D005543 ORTHO05D006584 4.9e-57 224.9 194 56.2
AUR62026611 Chenopodium quinoa HOM05D005543 ORTHO05D006584 8.3e-57 224.2 159 61.6
PGSC0003DMG400016956 Solanum tuberosum HOM05D005543 ORTHO05D006584 1.1e-56 223.8 150 66.7
SalBow6G1236 Salvia bowleyana HOM05D005543 ORTHO05D006584 1.9e-56 223.0 190 56.8
Migut.N02941 Erythranthe guttata HOM05D005543 ORTHO05D006584 9.2e-56 220.7 185 55.7
vmacro21199 Vaccinium macrocarpon HOM05D005543 ORTHO05D006584 6.0e-55 218.0 207 55.6
Nn1g05159 Nelumbo nucifera HOM05D005543 ORTHO05D006584 1.3e-54 216.9 182 60.4
unitig_578.g16221 Utricularia gibba HOM05D005543 ORTHO05D006584 1.3e-54 216.9 154 65.6
Aqoxy6G00453 Aquilegia oxysepala HOM05D005543 ORTHO05D006584 3.9e-54 215.3 148 66.2
FAN27G1145 Fragaria x ananassa HOM05D005543 ORTHO05D006584 1.1e-53 213.8 101 99.0
CDE05G2658 Ceratophyllum demersum HOM05D005543 ORTHO05D006584 2.1e-52 209.5 164 56.7
Lj5g0027482 Lotus japonicus HOM05D005543 ORTHO05D006584 2.4e-51 206.1 151 62.9
Psat6g189440 Pisum sativum HOM05D005543 ORTHO05D006584 2.2e-49 199.5 159 59.1
Lj4A705G47 Lonicera japonica HOM05D005543 ORTHO05D006584 1.2e-47 193.7 152 63.2
Os01g0715800 Oryza sativa ssp. japonica HOM05D005543 ORTHO05D006584 1.3e-46 190.3 156 57.1
TPR.G17022 Trifolium pratense HOM05D005543 ORTHO05D006584 3.9e-46 188.7 185 53.0
Medtr1g097400 Medicago truncatula HOM05D005543 ORTHO05D006584 1.5e-45 186.8 166 54.2
BcaC08g46607 Brassica carinata HOM05D005543 ORTHO05D006584 1.9e-45 186.4 189 52.9
Ca_10645_v3 Cicer arietinum L. HOM05D005543 ORTHO05D006584 1.4e-43 180.3 159 53.5
SEGI_03773 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 1.2e-42 177.2 158 51.3
SEGI_04047 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 1.2e-42 177.2 158 51.3
SEGI_37275 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 1.3e-41 173.7 150 53.3
CsaV3_6G004850 Cucumis sativus L. HOM05D005543 ORTHO05D006584 2.1e-39 166.4 113 68.1
Cpa.g.sc26.124 Carica papaya HOM05D005543 ORTHO05D006584 7.8e-39 164.5 146 58.2
Oeu022062.1 Olea europaea HOM05D005543 ORTHO05D006584 5.6e-37 158.3 115 66.1
CSS0045165 Camellia sinensis var. sinensis HOM05D005543 ORTHO05D006584 1.3e-33 147.1 128 60.2
Rhsim06G0093300 Rhododendron simsii HOM05D005543 ORTHO05D006584 1.4e-32 143.7 123 61.0
QL02p036789 Quercus lobata HOM05D005543 ORTHO05D006584 4.3e-29 132.1 116 58.6
Zm00001eb121890 Zea mays HOM05D005543 ORTHO05D006584 2.1e-28 129.8 158 40.5
QL02p036792 Quercus lobata HOM05D005543 ORTHO05D006584 5.5e-24 115.2 70 72.9
Oeu022061.1 Olea europaea HOM05D005543 ORTHO05D006584 6.7e-22 108.2 76 67.1
Mapoly0005s0207 Marchantia polymorpha HOM05D005543 ORTHO05D006584 8.7e-22 107.8 145 37.2
SGA_v2.0_scaffold43G16323 Striga asiatica HOM05D005543 ORTHO05D006584 9.6e-21 104.4 85 57.6
Sopen04g028180 Solanum pennellii HOM05D000002 ORTHO05D000047 2.4e-19 99.8 80 58.8
CSS0016395 Camellia sinensis var. sinensis HOM05D005543 ORTHO05D006584 5.3e-19 98.6 67 67.2
TPR.G22092 Trifolium pratense HOM05D005543 ORTHO05D006584 5.3e-19 98.6 71 62.0
SEGI_08036 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 1.2e-18 97.4 112 46.4
Pp3c1_40160 Physcomitrium patens HOM05D005543 ORTHO05D006584 1.9e-16 90.1 144 29.9
SGA_v2.0_scaffold130G34341 Striga asiatica HOM05D005543 ORTHO05D006584 9.7e-13 77.8 45 68.9
VMungo1127G1001 Vigna mungo HOM05D005543 ORTHO05D006584 1.3e-12 77.4 64 57.8
Pp3c17_20130 Physcomitrium patens HOM05D005543 ORTHO05D006584 2.2e-12 76.6 143 25.9
Cfa018258 Carpinus fangiana HOM05D005543 ORTHO05D006584 4.5e-10 68.9 60 60.0


User provided reference genes

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