Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g12470 Fragaria vesca HOM05D003913 ORTHO05D004803 5.3e-101 372.1 390 100.0
FAN24G0738 Fragaria x ananassa HOM05D003913 ORTHO05D004803 4.9e-99 365.5 390 99.2
RcHm_v2.0_Chr6g0272901 Rosa chinensis HOM05D003913 ORTHO05D004803 5.0e-91 339.0 390 94.4
Prupe.8G049100 Prunus persica HOM05D003913 ORTHO05D004803 2.6e-84 316.6 390 84.4
FAN08G0696 Fragaria x ananassa HOM05D003913 ORTHO05D004803 1.9e-74 283.9 387 80.4
PGR031G2719 Punica granatum HOM05D003913 ORTHO05D004803 1.9e-74 283.9 381 81.1
FvH4_5g22350 Fragaria vesca HOM05D003913 ORTHO05D004803 2.1e-73 280.4 387 80.9
FAN18G2025 Fragaria x ananassa HOM05D003913 ORTHO05D004803 2.1e-73 280.4 387 80.9
FAN18G2798 Fragaria x ananassa HOM05D003913 ORTHO05D004803 2.1e-73 280.4 387 80.9
RcHm_v2.0_Chr7g0210071 Rosa chinensis HOM05D003913 ORTHO05D004803 2.1e-73 280.4 387 81.4
MD02G1272000 Malus domestica HOM05D003913 ORTHO05D004803 4.4e-71 272.7 392 81.1
MD07G1041000 Malus domestica HOM05D003913 ORTHO05D004803 5.7e-71 272.3 392 79.6
Potri.019G087200 Populus trichocarpa HOM05D003913 ORTHO05D004803 7.4e-71 271.9 391 76.0
TWI12G0147 Tripterygium wilfordii HOM05D003913 ORTHO05D004803 2.2e-70 270.4 396 82.1
Dinv44716 Davidia involucrata HOM05D003913 ORTHO05D004803 2.4e-69 266.9 385 58.7
Dinv13071 Davidia involucrata HOM05D003913 ORTHO05D004803 1.2e-68 264.6 385 55.6
Manes.02G188000 Manihot esculenta HOM05D003913 ORTHO05D004803 2.0e-68 263.8 394 75.1
ClCG08G002560 Citrullus lanatus HOM05D003913 ORTHO05D004803 7.7e-68 261.9 384 77.9
CsaV3_6G002750 Cucumis sativus L. HOM05D003913 ORTHO05D004803 1.0e-67 261.5 384 78.1
FAN04G3257 Fragaria x ananassa HOM05D003913 ORTHO05D004803 1.5e-66 257.7 425 65.6
MELO3C024997.2 Cucumis melo HOM05D003913 ORTHO05D004803 2.5e-66 256.9 384 77.3
Nn3g16733 Nelumbo nucifera HOM05D003913 ORTHO05D004803 1.2e-65 254.6 391 80.6
FAN20G2057 Fragaria x ananassa HOM05D003913 ORTHO05D004803 3.6e-65 253.1 313 77.0
CSS0047372 Camellia sinensis var. sinensis HOM05D003913 ORTHO05D004803 6.1e-65 252.3 390 81.3
TWI75G1061 Tripterygium wilfordii HOM05D003913 ORTHO05D004803 8.0e-65 251.9 396 79.3
Sed0012824 Sechium edule HOM05D003913 ORTHO05D004803 4.0e-64 249.6 384 67.7
Ciclev10008663m.g Citrus clementina HOM05D003913 ORTHO05D004803 9.7e-63 245.0 390 74.1
Lalb_Chr20g0121511 Lupinus albus HOM05D003913 ORTHO05D004803 1.7e-62 244.2 379 48.8
Sed0004416 Sechium edule HOM05D003913 ORTHO05D004803 2.8e-62 243.4 396 75.0
Lsat_1_v5_gn_9_43060 Lactuca sativa HOM05D003913 ORTHO05D004803 4.1e-61 239.6 384 78.4
Oeu053831.1 Olea europaea HOM05D003913 ORTHO05D004803 7.0e-61 238.8 388 72.4
PSO675G8150 Papaver somniferum HOM05D003913 ORTHO05D004803 9.1e-61 238.4 386 82.1
ECA232G2276 Erigeron canadensis HOM05D003913 ORTHO05D004803 3.5e-60 236.5 385 79.5
Actinidia29569 Actinidia chinensis HOM05D003913 ORTHO05D004803 5.9e-60 235.7 387 74.4
Lj5g0008809 Lotus japonicus HOM05D003913 ORTHO05D004803 1.0e-59 235.0 395 43.3
LjContig00222g0022410 Lotus japonicus HOM05D003913 ORTHO05D004803 6.5e-59 232.3 395 46.3
TAR625G1217 Trochodendron aralioides HOM05D003913 ORTHO05D004803 6.5e-59 232.3 386 77.2
Rhsim04G0038100 Rhododendron simsii HOM05D003913 ORTHO05D004803 1.1e-58 231.5 408 76.0
BcaC08g46615 Brassica carinata HOM05D003913 ORTHO05D004803 1.9e-58 230.7 402 65.7
HanXRQChr11g0320411 Helianthus annuus HOM05D003913 ORTHO05D004803 1.9e-58 230.7 387 79.6
GSVIVG01015205001 Vitis vinifera HOM05D003913 ORTHO05D004803 2.5e-58 230.3 397 60.5
Gohir.A09G169700 Gossypium hirsutum HOM05D003913 ORTHO05D004803 3.6e-57 226.5 384 50.3
PSO541G3150 Papaver somniferum HOM05D003913 ORTHO05D004803 6.1e-57 225.7 359 78.8
Hund19608 Selenicereus undatus HOM05D003913 ORTHO05D004803 8.0e-57 225.3 438 66.7
BolC6t39643H Brassica oleracea HOM05D003913 ORTHO05D004803 1.0e-56 224.9 401 65.8
Aqoxy1G00206 Aquilegia oxysepala HOM05D003913 ORTHO05D004803 1.4e-56 224.6 392 68.9
CiPaw.15G007000 Carya illinoinensis HOM05D003913 ORTHO05D004803 1.8e-56 224.2 386 70.5
Cc11_g02860 Coffea canephora HOM05D003913 ORTHO05D004803 1.8e-56 224.2 394 72.6
Gorai.006G187200 Gossypium raimondii HOM05D003913 ORTHO05D004803 1.8e-56 224.2 384 44.3
Lj4A109T49 Lonicera japonica HOM05D003913 ORTHO05D004803 2.3e-56 223.8 386 75.6
Gohir.D09G165400 Gossypium hirsutum HOM05D003913 ORTHO05D004803 4.0e-56 223.0 384 44.0
Sabra19G0097800 Salix brachista HOM05D003913 ORTHO05D004803 5.2e-56 222.6 396 78.3
Aa31LG4G8790 Aethionema arabicum HOM05D003913 ORTHO05D004803 8.8e-56 221.9 414 64.0
Thhalv10018505m.g Eutrema salsugineum HOM05D003913 ORTHO05D004803 8.8e-56 221.9 385 68.1
CDE08G0059 Ceratophyllum demersum HOM05D003913 ORTHO05D004803 1.5e-55 221.1 381 69.6
THA.LOC104826775 Tarenaya hassleriana HOM05D003913 ORTHO05D004803 2.6e-55 220.3 384 69.0
Potri.013G116900 Populus trichocarpa HOM05D003913 ORTHO05D004803 4.4e-55 219.5 400 62.0
Atru.chr13.1880 Acer truncatum HOM05D003913 ORTHO05D004803 5.7e-55 219.2 384 72.7
AL2G31420 Arabidopsis lyrata HOM05D003913 ORTHO05D004803 5.7e-55 219.2 388 65.2
Sabra13G0099000 Salix brachista HOM05D003913 ORTHO05D004803 9.8e-55 218.4 390 70.3
Sabra19G0101300 Salix brachista HOM05D003913 ORTHO05D004803 1.3e-54 218.0 396 74.7
Phvul.011G104600 Phaseolus vulgaris HOM05D003913 ORTHO05D004803 1.7e-54 217.6 384 58.6
C06p45910 Brassica napus HOM05D003913 ORTHO05D004803 2.2e-54 217.2 396 65.4
CANSAT25G1043 Cannabis sativa HOM05D003913 ORTHO05D004803 3.7e-54 216.5 397 70.5
BcaB03g15621 Brassica carinata HOM05D003913 ORTHO05D004803 4.8e-54 216.1 391 62.4
BcaC08g45753 Brassica carinata HOM05D003913 ORTHO05D004803 2.4e-53 213.8 402 64.4
BraA07t31364Z Brassica rapa HOM05D003913 ORTHO05D004803 2.4e-53 213.8 385 65.5
Glyma.20G173100 Glycine max HOM05D003913 ORTHO05D004803 5.4e-53 212.6 379 51.7
Sp5g26870 Schrenkiella parvula HOM05D003913 ORTHO05D004803 7.0e-53 212.2 400 63.0
SpUn0020_0100 Schrenkiella parvula HOM05D003913 ORTHO05D004803 7.0e-53 212.2 400 63.0
Lj2C196T3 Lonicera japonica HOM05D003913 ORTHO05D004803 1.2e-52 211.5 389 48.1
Nitab4.5_0000366g0190 Nicotiana tabacum HOM05D003913 ORTHO05D004803 1.6e-52 211.1 390 70.0
VMungo1080G1176 Vigna mungo HOM05D003913 ORTHO05D004803 1.6e-52 211.1 384 53.9
MBI10_g42737_MAGBIO Magnolia biondii HOM05D003913 ORTHO05D004803 3.5e-52 209.9 347 83.6
Ca_30575_v3 Cicer arietinum L. HOM05D003913 ORTHO05D004803 4.5e-52 209.5 392 42.6
arahy.Tifrunner.gnm1.ann1.0Z7T57 Arachis hypogaea HOM05D003913 ORTHO05D004803 1.0e-51 208.4 379 41.4
BolC6t38638H Brassica oleracea HOM05D003913 ORTHO05D004803 1.3e-51 208.0 412 47.3
Gohir.D06G113300 Gossypium hirsutum HOM05D003913 ORTHO05D004803 1.3e-51 208.0 389 46.5
Gorai.010G129100 Gossypium raimondii HOM05D003913 ORTHO05D004803 1.3e-51 208.0 389 46.3
Nitab4.5_0002890g0020 Nicotiana tabacum HOM05D003913 ORTHO05D004803 1.3e-51 208.0 350 48.9
CARHR290910 Cardamine hirsuta HOM05D003913 ORTHO05D004803 1.7e-51 207.6 389 59.1
BraA07t30691Z Brassica rapa HOM05D003913 ORTHO05D004803 3.8e-51 206.5 412 55.3
AT1G71840 Arabidopsis thaliana HOM05D003913 ORTHO05D004803 6.5e-51 205.7 388 66.2
arahy.Tifrunner.gnm1.ann1.F1WV5B Arachis hypogaea HOM05D003913 ORTHO05D004803 1.1e-50 204.9 379 40.9
Cfa018220 Carpinus fangiana HOM05D003913 ORTHO05D004803 1.5e-50 204.5 341 81.8
AUR62017935 Chenopodium quinoa HOM05D003913 ORTHO05D004803 1.5e-50 204.5 398 67.3
C06p35320 Brassica napus HOM05D003913 ORTHO05D004803 1.9e-50 204.1 426 50.7
ECA236G4407 Erigeron canadensis HOM05D003913 ORTHO05D004803 2.5e-50 203.8 375 43.2
A07p30560 Brassica napus HOM05D003913 ORTHO05D004803 7.2e-50 202.2 426 41.8
A07p37990 Brassica napus HOM05D003913 ORTHO05D004803 9.4e-50 201.8 395 56.7
SalBow7G2889 Salvia bowleyana HOM05D003913 ORTHO05D004803 3.6e-49 199.9 401 60.3
GSVIVG01001592001 Vitis vinifera HOM05D003913 ORTHO05D004803 8.0e-49 198.7 395 71.9
EL10Ac6g15251 Beta vulgaris HOM05D003913 ORTHO05D004803 1.0e-48 198.4 398 74.6
Rhsim06G0087400 Rhododendron simsii HOM05D003913 ORTHO05D004803 4.0e-48 196.4 344 82.3
Hma1.2p1_0276F.1_g111300 Hydrangea macrophylla HOM05D003913 ORTHO05D004803 1.5e-47 194.5 309 84.5
ATR0001G003 Amborella trichopoda HOM05D003913 ORTHO05D004803 2.0e-47 194.1 345 51.9
VMungo0720G0336 Vigna mungo HOM05D003913 ORTHO05D004803 9.8e-47 191.8 386 53.4
PGSC0003DMG400028735 Solanum tuberosum HOM05D003913 ORTHO05D004803 1.7e-46 191.0 390 66.7
DCAR_000644 Daucus carota HOM05D003913 ORTHO05D004803 2.2e-46 190.7 378 47.9
Thecc.08G198300 Theobroma cacao HOM05D003913 ORTHO05D004803 2.2e-46 190.7 387 42.4
Duzib211G0424 Durio zibethinus HOM05D003913 ORTHO05D004803 3.7e-46 189.9 388 50.0
Sopen07g004790 Solanum pennellii HOM05D003913 ORTHO05D004803 6.3e-46 189.1 390 67.2
Solyc07g008860.3 Solanum lycopersicum HOM05D003913 ORTHO05D004803 3.1e-45 186.8 390 66.7
Oeu053830.1 Olea europaea HOM05D003913 ORTHO05D004803 2.0e-44 184.1 386 66.8
Sc16g0003970 Simmondsia chinensis HOM05D003913 ORTHO05D004803 2.0e-44 184.1 338 78.1
MSTRG.9615 Avicennia marina HOM05D003913 ORTHO05D004803 1.3e-43 181.4 350 67.7
Psat6g188560 Pisum sativum HOM05D000168 ORTHO05D004803 1.5e-42 177.9 369 33.3
TPR.G30584 Trifolium pratense HOM05D003913 ORTHO05D004803 7.3e-42 175.6 406 39.2
Aa31LG7G6630 Aethionema arabicum HOM05D003913 ORTHO05D004803 2.1e-41 174.1 393 31.0
Gohir.A06G109200 Gossypium hirsutum HOM05D003913 ORTHO05D004803 2.8e-41 173.7 360 40.8
SGA_v2.0_scaffold114G31919 Striga asiatica HOM05D003913 ORTHO05D004803 1.0e-40 171.8 343 67.9
Nitab4.5_0002890g0010 Nicotiana tabacum HOM05D003913 ORTHO05D004803 1.8e-40 171.0 328 46.3
Migut.J01123 Erythranthe guttata HOM05D003913 ORTHO05D004803 4.0e-40 169.9 405 40.0
Zm00001eb362180 Zea mays HOM05D003913 ORTHO05D004803 4.0e-40 169.9 390 53.8
Medtr1g097140 Medicago truncatula HOM05D003913 ORTHO05D004803 6.8e-40 169.1 406 31.5
Carub.0002s1860 Capsella rubella HOM05D003913 ORTHO05D004803 2.0e-39 167.5 388 63.1
Ah.03g146560 Amaranthus hybridus HOM05D003913 ORTHO05D004803 2.2e-38 164.1 386 67.1
HPP92_008098 Vanilla planifolia HOM05D003913 ORTHO05D004803 2.9e-38 163.7 384 67.4
Actinidia33168 Actinidia chinensis HOM05D003898 ORTHO05D004642 1.1e-37 161.8 108 73.1
Zm00001eb139680 Zea mays HOM05D003913 ORTHO05D004803 9.2e-37 158.7 389 63.5
Migut.D01748 Erythranthe guttata HOM05D003913 ORTHO05D004803 2.0e-36 157.5 344 73.8
Haze_17883 Corylus avellana HOM05D003913 ORTHO05D004803 2.7e-36 157.1 486 61.5
COL.COLO4_03395 Corchorus olitorius HOM05D003913 ORTHO05D004803 3.5e-36 156.8 105 72.4
DCAR_004603 Daucus carota HOM05D000366 ORTHO05D000437 4.6e-36 156.4 104 72.1
TAR381G0993 Trochodendron aralioides HOM05D003913 ORTHO05D004803 5.9e-36 156.0 106 70.8
arahy.Tifrunner.gnm1.ann1.A7TGXU Arachis hypogaea HOM05D003913 ORTHO05D004803 1.0e-35 155.2 408 34.3
Cpa.g.sc2399.1 Carica papaya HOM05D003913 ORTHO05D004803 1.3e-35 154.8 106 72.6
COL.COLO4_13734 Corchorus olitorius HOM05D003913 ORTHO05D004803 3.0e-35 153.7 335 44.2
Os03g0685600 Oryza sativa ssp. japonica HOM05D003913 ORTHO05D004803 5.0e-35 152.9 385 57.9
EL10Ac5g10958 Beta vulgaris HOM05D003913 ORTHO05D004803 3.3e-34 150.2 392 29.3
CANSAT11G1897 Cannabis sativa HOM05D003913 ORTHO05D004803 3.3e-34 150.2 102 71.6
Eucgr.E02330 Eucalyptus grandis HOM05D003913 ORTHO05D004803 3.3e-34 150.2 112 64.3
SEGI_39165 Sequoiadendron giganteum HOM05D003913 ORTHO05D004803 3.3e-34 150.2 389 61.7
AUR62003626 Chenopodium quinoa HOM05D003913 ORTHO05D004803 2.1e-33 147.5 107 63.6
QL02p034830 Quercus lobata HOM05D003913 ORTHO05D004803 3.6e-33 146.7 104 67.3
unitig_747.g21315 Utricularia gibba HOM05D003913 ORTHO05D004803 4.7e-33 146.4 380 37.9
MBI10_g41322_MAGBIO Magnolia biondii HOM05D003913 ORTHO05D004803 3.1e-32 143.7 106 64.2
Glyma.10G218600 Glycine max HOM05D003913 ORTHO05D004803 2.0e-31 141.0 113 64.6
EL10Ac9g21859 Beta vulgaris HOM05D003913 ORTHO05D004803 4.9e-30 136.3 330 35.8
Pp3c14_20020 Physcomitrium patens HOM05D003913 ORTHO05D004803 1.9e-29 134.4 402 58.5
Migut.I00088 Erythranthe guttata HOM05D003913 ORTHO05D004803 2.4e-29 134.0 387 42.6
AagrBONN_evm.TU.Sc2ySwM_368.376 Anthoceros agrestis HOM05D003913 ORTHO05D004803 2.7e-28 130.6 403 61.3
Psat6g019720 Pisum sativum HOM05D003913 ORTHO05D004803 4.6e-28 129.8 107 58.9
Peaxi162Scf01838g00003 Petunia axillaris HOM05D000173 ORTHO05D000316 3.9e-27 126.7 109 57.8
CARHR124080 Cardamine hirsuta HOM05D003913 ORTHO05D004803 5.0e-27 126.3 363 26.4
Hma1.2p1_0276F.1_g111310 Hydrangea macrophylla HOM05D003913 ORTHO05D004803 6.6e-27 125.9 108 62.0
Glyma.10G218500 Glycine max HOM05D003913 ORTHO05D004803 4.3e-26 123.2 124 50.0
AUR62024845 Chenopodium quinoa HOM05D003913 ORTHO05D004803 2.0e-23 114.4 377 25.5
Glyma.09G057500 Glycine max HOM05D003913 ORTHO05D004803 3.4e-23 113.6 164 38.4
vmacro21210 Vaccinium macrocarpon HOM05D003913 ORTHO05D004803 1.7e-22 111.3 409 56.0
Mapoly0155s0005 Marchantia polymorpha HOM05D003913 ORTHO05D004803 4.9e-22 109.8 397 32.7
SMO347G0114 Selaginella moellendorffii HOM05D003913 ORTHO05D004803 4.9e-22 109.8 401 39.7
PSO455G0073 Papaver somniferum HOM05D003913 ORTHO05D004803 1.9e-21 107.8 60 80.0
Psat6g021120 Pisum sativum HOM05D003913 ORTHO05D004803 3.2e-21 107.1 120 47.5
AUR62001664 Chenopodium quinoa HOM05D003913 ORTHO05D004803 1.6e-20 104.8 343 24.8
BolC6t38649H Brassica oleracea HOM05D003913 ORTHO05D004803 1.1e-16 92.0 112 43.8
Thecc.09G236800 Theobroma cacao HOM05D003913 ORTHO05D004803 1.4e-16 91.7 52 78.8
Lj4C56G20 Lonicera japonica HOM05D003913 ORTHO05D004803 2.3e-16 90.9 55 74.5
SMO343G0013 Selaginella moellendorffii HOM05D003913 ORTHO05D004803 4.0e-16 90.1 113 40.7
Medtr7g111550 Medicago truncatula HOM05D003913 ORTHO05D004803 8.9e-16 89.0 99 48.5
CBR_g49506 Chara braunii HOM05D003913 ORTHO05D004803 3.4e-15 87.0 405 59.8
Medtr7g079470 Medicago truncatula HOM05D003913 ORTHO05D004803 4.4e-15 86.7 61 67.2
BraA02t06789Z Brassica rapa HOM05D003913 ORTHO05D004803 7.6e-15 85.9 52 71.2
SHI13909 Sapria himalayana HOM05D003913 ORTHO05D004803 1.7e-14 84.7 94 51.1
A02p17440 Brassica napus HOM05D003913 ORTHO05D004803 2.9e-14 84.0 52 69.2
SMO367G0065 Selaginella moellendorffii HOM05D003913 ORTHO05D004803 2.4e-13 80.9 107 39.3
Glyma.17G173200 Glycine max HOM05D003913 ORTHO05D004803 1.6e-12 78.2 42 81.0
Cre12.g487200 Chlamydomonas reinhardtii HOM05D003913 ORTHO05D004803 4.3e-10 70.1 412 23.8
MCO10G384 Micromonas commoda HOM05D003913 ORTHO05D004803 1.2e-09 68.6 124 28.2
Cpa.g.sc66.118 Carica papaya HOM05D003913 ORTHO05D004411 6.9e-08 62.8 27 92.6


User provided reference genes

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