Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g12360 Fragaria vesca HOM05D004272 ORTHO05D005020 1.0e-193 679.9 332 100.0
FAN24G2414 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.1e-192 676.4 331 99.4
FAN20G0830 Fragaria x ananassa HOM05D004272 ORTHO05D005020 4.4e-189 664.5 331 97.9
FAN27G2909 Fragaria x ananassa HOM05D004272 ORTHO05D005020 3.5e-186 654.8 331 96.4
RcHm_v2.0_Chr6g0272381 Rosa chinensis HOM05D004272 ORTHO05D005020 2.9e-172 608.6 331 89.7
MD10G1045300 Malus domestica HOM05D004272 ORTHO05D005020 5.4e-155 551.2 331 79.5
Prupe.8G052200 Prunus persica HOM05D004272 ORTHO05D005020 2.1e-154 549.3 323 81.4
QL02p034274 Quercus lobata HOM05D004272 ORTHO05D005020 2.8e-143 512.3 322 76.7
GSVIVG01034890001 Vitis vinifera HOM05D004272 ORTHO05D005020 5.2e-142 508.1 318 76.7
CANSAT25G2208 Cannabis sativa HOM05D004272 ORTHO05D005020 1.2e-141 506.9 323 72.8
Ciclev10001727m.g Citrus clementina HOM05D004272 ORTHO05D005020 4.4e-141 505.0 329 73.3
CiPaw.16G063800 Carya illinoinensis HOM05D004272 ORTHO05D005020 5.8e-141 504.6 326 74.5
CiPaw.15G083400 Carya illinoinensis HOM05D004272 ORTHO05D005020 1.7e-140 503.1 320 74.4
MD05G1039700 Malus domestica HOM05D004272 ORTHO05D005020 3.8e-140 501.9 305 78.0
Gohir.A09G116800 Gossypium hirsutum HOM05D004272 ORTHO05D005020 4.2e-139 498.4 332 69.3
Cpa.g.sc64.134 Carica papaya HOM05D004272 ORTHO05D005020 7.1e-139 497.7 321 73.5
Potri.013G115400 Populus trichocarpa HOM05D004272 ORTHO05D005020 1.6e-138 496.5 322 72.4
Thecc.08G200200 Theobroma cacao HOM05D004272 ORTHO05D005020 1.6e-138 496.5 342 67.5
Cc00_g04120 Coffea canephora HOM05D004272 ORTHO05D005020 6.0e-138 494.6 329 71.7
Gohir.D09G113700 Gossypium hirsutum HOM05D004272 ORTHO05D005020 7.8e-138 494.2 332 69.0
Manes.18G099100 Manihot esculenta HOM05D004272 ORTHO05D005020 1.0e-137 493.8 323 71.2
CSS0015299 Camellia sinensis var. sinensis HOM05D004272 ORTHO05D005020 1.3e-137 493.4 326 72.1
Sabra13G0097600 Salix brachista HOM05D004272 ORTHO05D005020 1.7e-137 493.0 316 71.8
Gorai.006G131400 Gossypium raimondii HOM05D004272 ORTHO05D005020 3.9e-137 491.9 332 68.7
Dinv12903 Davidia involucrata HOM05D004272 ORTHO05D005020 5.6e-136 488.0 326 70.2
VMungo0720G1438 Vigna mungo HOM05D004272 ORTHO05D005020 1.3e-135 486.9 314 71.3
Eucgr.F04145 Eucalyptus grandis HOM05D004272 ORTHO05D005020 2.1e-135 486.1 321 72.0
MELO3C018159.2 Cucumis melo HOM05D004272 ORTHO05D005020 6.2e-135 484.6 320 72.2
Phvul.007G087900 Phaseolus vulgaris HOM05D004272 ORTHO05D005020 3.1e-134 482.3 314 71.0
Actinidia02597 Actinidia chinensis HOM05D004272 ORTHO05D005020 5.3e-134 481.5 325 71.7
Duzib116G0407 Durio zibethinus HOM05D004272 ORTHO05D005020 9.0e-134 480.7 369 63.1
Haze_17897 Corylus avellana HOM05D004272 ORTHO05D005020 2.6e-133 479.2 388 63.4
THA.LOC104800104 Tarenaya hassleriana HOM05D004272 ORTHO05D005020 2.6e-133 479.2 327 68.5
Peaxi162Scf00268g01426 Petunia axillaris HOM05D004272 ORTHO05D005020 5.8e-133 478.0 328 69.2
Carub.0002s1862 Capsella rubella HOM05D004272 ORTHO05D005020 7.6e-133 477.6 326 68.4
Nitab4.5_0006059g0040 Nicotiana tabacum HOM05D004272 ORTHO05D005020 1.7e-132 476.5 328 70.1
Sp5g26920 Schrenkiella parvula HOM05D004272 ORTHO05D005020 2.2e-132 476.1 320 69.1
SpUn0020_0060 Schrenkiella parvula HOM05D004272 ORTHO05D005020 2.2e-132 476.1 320 69.1
Aa31LG4G8760 Aethionema arabicum HOM05D004272 ORTHO05D005020 4.9e-132 474.9 326 68.4
Sed0022323 Sechium edule HOM05D004272 ORTHO05D005020 6.4e-132 474.6 326 69.6
Thhalv10018624m.g Eutrema salsugineum HOM05D004272 ORTHO05D005020 2.7e-130 469.2 327 67.3
AL2G31440 Arabidopsis lyrata HOM05D004272 ORTHO05D005020 4.6e-130 468.4 326 67.2
arahy.Tifrunner.gnm1.ann1.CBRY2G Arachis hypogaea HOM05D004272 ORTHO05D005020 6.0e-130 468.0 319 69.0
arahy.Tifrunner.gnm1.ann1.6Q1IL7 Arachis hypogaea HOM05D004272 ORTHO05D005020 1.0e-129 467.2 319 69.0
Hma1.2p1_0510F.1_g168790 Hydrangea macrophylla HOM05D004272 ORTHO05D005020 1.0e-129 467.2 300 74.0
CsaV3_7G024250 Cucumis sativus L. HOM05D004272 ORTHO05D005020 2.3e-129 466.1 313 71.2
Oeu004773.1 Olea europaea HOM05D004272 ORTHO05D005020 2.3e-129 466.1 327 68.8
Atru.chr13.1851 Acer truncatum HOM05D004272 ORTHO05D005020 3.9e-129 465.3 358 64.0
Oeu030010.1 Olea europaea HOM05D004272 ORTHO05D005020 3.9e-129 465.3 315 70.5
Sopen11g008950 Solanum pennellii HOM05D004272 ORTHO05D005020 5.1e-129 464.9 329 69.0
Glyma.10G218100 Glycine max HOM05D004272 ORTHO05D005020 6.7e-129 464.5 314 69.1
Lj5g0022070 Lotus japonicus HOM05D004272 ORTHO05D005020 8.7e-129 464.2 329 68.4
Glyma.20G173700 Glycine max HOM05D004272 ORTHO05D005020 3.3e-128 462.2 314 69.7
Rhsim06G0099300 Rhododendron simsii HOM05D004272 ORTHO05D005020 3.3e-128 462.2 366 62.3
AT1G71860 Arabidopsis thaliana HOM05D004272 ORTHO05D005020 4.3e-128 461.8 326 67.5
Ca_10628_v3 Cicer arietinum L. HOM05D004272 ORTHO05D005020 4.3e-128 461.8 307 70.4
C06p45930 Brassica napus HOM05D004272 ORTHO05D005020 5.6e-128 461.5 326 68.1
BolC6t39646H Brassica oleracea HOM05D004272 ORTHO05D005020 7.4e-128 461.1 326 68.1
Sc01g0001660 Simmondsia chinensis HOM05D004272 ORTHO05D005020 9.6e-128 460.7 326 68.4
Solyc11g016990.3 Solanum lycopersicum HOM05D004272 ORTHO05D005020 9.6e-128 460.7 322 68.9
Lalb_Chr06g0161911 Lupinus albus HOM05D004272 ORTHO05D005020 2.1e-127 459.5 314 67.5
Medtr1g096990 Medicago truncatula HOM05D004272 ORTHO05D005020 2.8e-127 459.1 315 67.9
BcaC08g46620 Brassica carinata HOM05D004272 ORTHO05D005020 3.7e-127 458.8 326 67.8
BcaC08g46618 Brassica carinata HOM05D004272 ORTHO05D005020 1.1e-126 457.2 330 67.0
A07p38020 Brassica napus HOM05D004272 ORTHO05D005020 1.4e-126 456.8 327 67.0
BraA07t31367Z Brassica rapa HOM05D004272 ORTHO05D005020 1.4e-126 456.8 327 67.3
TPR.G15693 Trifolium pratense HOM05D004272 ORTHO05D005020 1.8e-126 456.4 315 68.3
Rhsim11G0061700 Rhododendron simsii HOM05D004272 ORTHO05D005020 5.8e-125 451.4 345 64.3
Rhsim11G0063200 Rhododendron simsii HOM05D004272 ORTHO05D005020 5.8e-125 451.4 345 64.3
SalBow6G4901 Salvia bowleyana HOM05D004272 ORTHO05D005020 8.4e-124 447.6 321 67.0
Sopen06g023970 Solanum pennellii HOM05D004272 ORTHO05D005020 1.2e-122 443.7 322 67.7
Hund27072 Selenicereus undatus HOM05D004272 ORTHO05D005020 2.1e-122 443.0 321 65.1
Migut.N03339 Erythranthe guttata HOM05D004272 ORTHO05D005020 6.0e-122 441.4 315 66.7
Solyc06g065480.4 Solanum lycopersicum HOM05D004272 ORTHO05D005020 6.0e-122 441.4 320 67.2
SalBow6G0059 Salvia bowleyana HOM05D004272 ORTHO05D005020 1.8e-121 439.9 311 68.2
TAR381G1009 Trochodendron aralioides HOM05D004272 ORTHO05D005020 8.7e-121 437.6 298 70.1
EL10Ac1g00062 Beta vulgaris HOM05D004272 ORTHO05D005020 3.7e-119 432.2 310 66.5
HanXRQChr13g0388201 Helianthus annuus HOM05D004272 ORTHO05D005020 1.4e-118 430.3 319 64.6
ClCG09G010370 Citrullus lanatus HOM05D004272 ORTHO05D005020 2.0e-117 426.4 301 67.4
Aqoxy6G00139 Aquilegia oxysepala HOM05D004272 ORTHO05D005020 4.5e-117 425.2 323 64.4
Lsat_1_v5_gn_5_157280 Lactuca sativa HOM05D004272 ORTHO05D005020 2.2e-116 422.9 313 64.5
vmacro12508 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 6.5e-116 421.4 301 67.1
PSO170G2262 Papaver somniferum HOM05D004272 ORTHO05D005020 8.4e-116 421.0 317 64.0
Nitab4.5_0000159g0070 Nicotiana tabacum HOM05D004272 ORTHO05D005020 1.9e-115 419.9 281 71.2
Nitab4.5_0003518g0050 Nicotiana tabacum HOM05D004272 ORTHO05D005020 7.1e-115 417.9 275 72.0
Migut.C01228 Erythranthe guttata HOM05D004272 ORTHO05D005020 2.1e-114 416.4 314 64.0
Lj7C302G8 Lonicera japonica HOM05D004272 ORTHO05D005020 3.5e-114 415.6 363 58.7
CARHR289070 Cardamine hirsuta HOM05D004272 ORTHO05D005020 3.0e-113 412.5 270 70.4
DCAR_010068 Daucus carota HOM05D004272 ORTHO05D005020 3.0e-113 412.5 306 65.4
unitig_61.g26072 Utricularia gibba HOM05D004272 ORTHO05D005020 8.7e-113 411.0 315 62.2
AUR62004668 Chenopodium quinoa HOM05D004272 ORTHO05D005020 1.1e-110 404.1 261 70.5
CAN.G199.25 Capsicum annuum HOM05D004272 ORTHO05D005020 2.4e-110 402.9 272 69.1
ATR0687G002 Amborella trichopoda HOM05D004272 ORTHO05D005020 1.0e-108 397.5 322 59.6
HPP92_003132 Vanilla planifolia HOM05D004272 ORTHO05D005020 1.1e-107 394.0 311 58.8
RcHm_v2.0_Chr3g0456471 Rosa chinensis HOM05D004272 ORTHO05D005020 3.2e-107 392.5 329 63.2
AUR62023587 Chenopodium quinoa HOM05D004272 ORTHO05D005020 6.1e-106 388.3 251 71.3
CAN.G61.12 Capsicum annuum HOM05D004272 ORTHO05D005020 1.0e-105 387.5 249 72.7
RcHm_v2.0_Chr7g0181531 Rosa chinensis HOM05D004272 ORTHO05D005020 1.8e-105 386.7 336 61.3
TWI60G0092 Tripterygium wilfordii HOM05D004272 ORTHO05D005020 1.9e-104 383.3 340 60.3
Hund16809 Selenicereus undatus HOM05D004272 ORTHO05D005020 6.9e-102 374.8 319 57.4
FAN18G3209 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.2e-101 374.0 330 60.6
FvH4_5g14850 Fragaria vesca HOM05D004272 ORTHO05D005020 2.6e-101 372.9 330 60.3
FAN08G2250 Fragaria x ananassa HOM05D004272 ORTHO05D005020 7.7e-101 371.3 330 60.6
Nn5g27830 Nelumbo nucifera HOM05D004272 ORTHO05D005020 2.2e-100 369.8 321 59.5
PSO782G4024 Papaver somniferum HOM05D004272 ORTHO05D005020 2.2e-100 369.8 319 56.7
SGA_v2.0_scaffold149G36610 Striga asiatica HOM05D004272 ORTHO05D005020 2.9e-100 369.4 403 50.6
FAN13G2363 Fragaria x ananassa HOM05D004272 ORTHO05D005020 8.5e-100 367.9 338 59.5
MELO3C023674.2 Cucumis melo HOM05D004272 ORTHO05D005020 1.4e-99 367.1 246 70.3
PSO170G2167 Papaver somniferum HOM05D004272 ORTHO05D005020 2.5e-99 366.3 328 56.1
DCAR_014268 Daucus carota HOM05D004272 ORTHO05D005020 4.7e-98 362.1 335 54.9
MD09G1287400 Malus domestica HOM05D004272 ORTHO05D005020 1.1e-96 357.5 330 60.3
Prupe.1G402600 Prunus persica HOM05D004272 ORTHO05D005020 4.8e-95 352.1 325 60.0
Manes.02G190000 Manihot esculenta HOM05D004272 ORTHO05D005020 2.4e-94 349.7 209 75.6
Hund16808 Selenicereus undatus HOM05D004272 ORTHO05D005020 1.2e-93 347.4 313 55.6
arahy.Tifrunner.gnm1.ann1.E3548W Arachis hypogaea HOM05D004272 ORTHO05D005020 3.8e-92 342.4 230 68.7
HanXRQChr13g0388211 Helianthus annuus HOM05D004272 ORTHO05D005020 8.5e-92 341.3 293 58.4
ECA248G3752 Erigeron canadensis HOM05D004272 ORTHO05D005020 1.6e-90 337.0 331 55.6
vmacro00781 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 3.6e-90 335.9 406 48.5
Ah.05g177840 Amaranthus hybridus HOM05D004272 ORTHO05D005020 3.0e-89 332.8 300 56.0
Psat6g189360 Pisum sativum HOM05D004272 ORTHO05D005020 2.0e-88 330.1 247 62.8
Nitab4.5_0029014g0010 Nicotiana tabacum HOM05D004272 ORTHO05D005020 6.3e-87 325.1 284 58.8
ECA248G0749 Erigeron canadensis HOM05D004272 ORTHO05D005020 1.0e-81 307.8 250 60.0
SHI09047 Sapria himalayana HOM05D004272 ORTHO05D005020 4.2e-75 285.8 305 49.2
Pp3c13_6130 Physcomitrium patens HOM05D004272 ORTHO05D005020 1.3e-71 274.2 310 45.5
Os12g0174800 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 3.3e-67 259.6 301 44.9
Mapoly0167s0026 Marchantia polymorpha HOM05D004272 ORTHO05D005020 1.8e-65 253.8 327 42.8
Pp3c3_2290 Physcomitrium patens HOM05D004272 ORTHO05D005020 2.3e-65 253.4 311 43.1
SMO347G0125 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 1.5e-64 250.8 302 42.7
SGA_v2.0_scaffold483G52343 Striga asiatica HOM05D004272 ORTHO05D005020 4.5e-61 239.2 154 72.7
Os11g0180200 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 1.8e-57 227.3 241 49.8
Potri.019G086001 Populus trichocarpa HOM05D004272 ORTHO05D005020 3.5e-53 213.0 134 70.9
CDE12G0366 Ceratophyllum demersum HOM05D004272 ORTHO05D005020 7.8e-53 211.8 251 45.8
SEGI_33079 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 2.5e-51 206.8 160 59.4
PGSC0003DMG400024543 Solanum tuberosum HOM05D004272 ORTHO05D005020 1.6e-50 204.1 166 60.8
AagrBONN_evm.TU.Sc2ySwM_228.1486 Anthoceros agrestis HOM05D004272 ORTHO05D005020 8.0e-50 201.8 252 41.3
Dinv41680 Davidia involucrata HOM05D004272 ORTHO05D005020 6.8e-49 198.7 113 81.4
Zm00001eb091350 Zea mays HOM05D004272 ORTHO05D005020 6.8e-49 198.7 317 39.7
CBR_g17924 Chara braunii HOM05D004272 ORTHO05D005020 2.0e-48 197.2 199 47.2
Cre12.g524450 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 4.9e-47 192.6 303 37.3
Zm00001eb138930 Zea mays HOM05D004272 ORTHO05D005020 6.2e-42 175.6 250 40.8
CBR_g49956 Chara braunii HOM05D004272 ORTHO05D005020 2.1e-37 160.6 289 36.3
TPR.G15698 Trifolium pratense HOM05D004272 ORTHO05D005020 6.6e-36 155.6 94 72.3
Haze_26549 Corylus avellana HOM05D004272 ORTHO05D005020 3.6e-34 149.8 255 35.7
Haze_26606 Corylus avellana HOM05D004272 ORTHO05D005020 1.3e-31 141.4 244 33.2
Cre09.g389949 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 5.4e-30 136.0 393 29.3
SMO166G0076 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 2.3e-28 130.6 258 31.8
SMO119G0089 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 5.1e-28 129.4 226 33.6
SGA_v2.0_scaffold1053G53812 Striga asiatica HOM05D004272 ORTHO05D005020 6.9e-25 119.0 68 80.9
SGA_v2.0_scaffold322G48619 Striga asiatica HOM05D004272 ORTHO05D005020 6.9e-25 119.0 68 80.9
SGA_v2.0_scaffold386G50488 Striga asiatica HOM05D004272 ORTHO05D005020 1.5e-24 117.9 68 79.4
SMO351G0156 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 3.4e-24 116.7 157 41.4
PRCOL_00003935 Prasinoderma coloniale HOM05D004272 ORTHO05D005020 5.8e-24 115.9 305 31.8
SMO115G0188 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 9.9e-24 115.2 164 35.4
CBR_g53619 Chara braunii HOM05D004272 ORTHO05D005020 6.4e-23 112.5 119 42.0
CBR_g53623 Chara braunii HOM05D004272 ORTHO05D005020 1.2e-21 108.2 105 41.9
SEGI_21150 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 2.1e-21 107.5 84 59.5
Cfa022797 Carpinus fangiana HOM05D004272 ORTHO05D005020 8.7e-20 102.1 352 26.7
PSO170G3665 Papaver somniferum HOM05D004272 ORTHO05D005020 7.3e-19 99.0 212 31.1
Cfa026335 Carpinus fangiana HOM05D003314 ORTHO05D004164 2.8e-18 97.1 251 28.7
Glyma.20G173900 Glycine max HOM05D004272 ORTHO05D005020 6.9e-17 92.4 60 70.0
Psat6g014560 Pisum sativum HOM05D004272 ORTHO05D005020 1.6e-13 81.3 80 56.2
CARHR290880 Cardamine hirsuta HOM05D004272 ORTHO05D005020 6.0e-13 79.3 81 50.6
Glyma.20G173800 Glycine max HOM05D004272 ORTHO05D005020 1.5e-11 74.7 108 45.4
COL.COLO4_33299 Corchorus olitorius HOM05D004272 ORTHO05D005020 2.4e-09 67.4 47 68.1


User provided reference genes

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