Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g11710 Fragaria vesca HOM05D003826 ORTHO05D004479 4.2e-102 374.8 201 100.0
FAN24G2578 Fragaria x ananassa HOM05D003826 ORTHO05D004479 2.1e-101 372.5 201 99.0
Prupe.8G069800 Prunus persica HOM05D003826 ORTHO05D004479 4.1e-89 331.6 175 91.4
MD05G1047400 Malus domestica HOM05D003826 ORTHO05D004479 2.0e-88 329.3 196 82.7
RcHm_v2.0_Chr6g0271011 Rosa chinensis HOM05D003826 ORTHO05D004479 2.9e-87 325.5 175 91.4
Cfa005734 Carpinus fangiana HOM05D003826 ORTHO05D004479 7.4e-83 310.8 174 83.9
CiPaw.05G029600 Carya illinoinensis HOM05D003826 ORTHO05D004479 2.2e-82 309.3 195 77.9
Manes.07G038200 Manihot esculenta HOM05D003826 ORTHO05D004479 6.3e-82 307.8 198 75.8
Thecc.02G129300 Theobroma cacao HOM05D003826 ORTHO05D004479 8.2e-82 307.4 174 83.9
Haze_10523 Corylus avellana HOM05D003826 ORTHO05D004479 1.1e-81 307.0 196 76.0
Atru.chr6.1261 Acer truncatum HOM05D003826 ORTHO05D004479 9.1e-81 303.9 198 75.3
ClCG09G016080 Citrullus lanatus HOM05D003826 ORTHO05D004479 9.1e-81 303.9 196 75.5
Gohir.A13G050900 Gossypium hirsutum HOM05D003826 ORTHO05D004479 2.0e-80 302.8 196 75.0
Duzib052G0856 Durio zibethinus HOM05D003826 ORTHO05D004479 3.5e-80 302.0 193 76.2
QL11p025207 Quercus lobata HOM05D003826 ORTHO05D004479 3.5e-80 302.0 175 82.3
Sed0006788 Sechium edule HOM05D003826 ORTHO05D004479 3.5e-80 302.0 196 75.5
Atru.chr6.1269 Acer truncatum HOM05D003826 ORTHO05D004479 7.7e-80 300.8 198 74.7
CsaV3_7G006880 Cucumis sativus L. HOM05D003826 ORTHO05D004479 1.0e-79 300.4 196 74.5
Eucgr.G00988 Eucalyptus grandis HOM05D003826 ORTHO05D004479 1.0e-79 300.4 194 75.8
Gorai.013G055500 Gossypium raimondii HOM05D003826 ORTHO05D004479 2.2e-79 299.3 196 74.0
Manes.10G098600 Manihot esculenta HOM05D003826 ORTHO05D004479 6.5e-79 297.7 173 81.5
MELO3C018606.2 Cucumis melo HOM05D003826 ORTHO05D004479 8.5e-79 297.4 198 74.7
TWI59G0852 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 1.1e-78 297.0 196 74.5
Ciclev10029337m.g Citrus clementina HOM05D003826 ORTHO05D004479 1.5e-78 296.6 174 79.3
Potri.017G043900 Populus trichocarpa HOM05D003826 ORTHO05D004479 2.5e-78 295.8 175 78.3
TWI14G0912 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 2.5e-78 295.8 198 72.2
Cc02_g20920 Coffea canephora HOM05D003826 ORTHO05D004479 5.5e-78 294.7 174 77.6
PGR042G0672 Punica granatum HOM05D003826 ORTHO05D004479 9.4e-78 293.9 194 74.2
Potri.017G043700 Populus trichocarpa HOM05D003826 ORTHO05D004479 2.7e-77 292.4 198 72.2
Oeu042406.1 Olea europaea HOM05D003826 ORTHO05D004479 1.4e-76 290.0 197 71.1
Thhalv10022868m.g Eutrema salsugineum HOM05D003826 ORTHO05D004479 3.0e-76 288.9 175 77.7
Sp3g27460 Schrenkiella parvula HOM05D003826 ORTHO05D004479 3.0e-76 288.9 175 77.1
Hma1.2p1_0908F.1_g235485 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 4.0e-76 288.5 172 79.7
BolC9t54449H Brassica oleracea HOM05D003826 ORTHO05D004479 5.2e-76 288.1 175 76.6
Sabra17G0029800 Salix brachista HOM05D003826 ORTHO05D004479 5.2e-76 288.1 198 71.2
BcaB02g11486 Brassica carinata HOM05D003826 ORTHO05D004479 8.8e-76 287.3 175 76.6
Aa31LG8G12520 Aethionema arabicum HOM05D003826 ORTHO05D004479 1.2e-75 287.0 175 76.0
THA.LOC104807183 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 1.2e-75 287.0 175 75.4
Actinidia28031 Actinidia chinensis HOM05D003826 ORTHO05D004479 1.5e-75 286.6 173 79.2
BraA09t36947Z Brassica rapa HOM05D003826 ORTHO05D004479 2.6e-75 285.8 175 75.4
TAR628G1674 Trochodendron aralioides HOM05D003826 ORTHO05D004479 2.6e-75 285.8 173 79.2
BcaC04g22775 Brassica carinata HOM05D003826 ORTHO05D004479 3.3e-75 285.4 175 75.4
C09p15420 Brassica napus HOM05D003826 ORTHO05D004479 3.3e-75 285.4 175 75.4
vmacro19957 Vaccinium macrocarpon HOM05D003826 ORTHO05D004479 3.3e-75 285.4 173 78.6
CSS0016886 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 4.4e-75 285.0 173 78.0
CSS0036052 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 4.4e-75 285.0 173 78.0
CARHR104200 Cardamine hirsuta HOM05D003826 ORTHO05D004479 4.4e-75 285.0 175 75.4
Carub.0003s2836 Capsella rubella HOM05D003826 ORTHO05D004479 5.7e-75 284.6 175 74.9
Nn1g05569 Nelumbo nucifera HOM05D003826 ORTHO05D004479 7.5e-75 284.3 175 78.3
Cpa.g.sc20.1 Carica papaya HOM05D003826 ORTHO05D004479 9.7e-75 283.9 175 77.1
Rhsim05G0101900 Rhododendron simsii HOM05D003826 ORTHO05D004479 9.7e-75 283.9 173 78.0
MSTRG.20281 Avicennia marina HOM05D003826 ORTHO05D004479 1.3e-74 283.5 173 76.9
arahy.Tifrunner.gnm1.ann1.AL483W Arachis hypogaea HOM05D003826 ORTHO05D004479 2.8e-74 282.3 175 77.7
arahy.Tifrunner.gnm1.ann1.8F9AHD Arachis hypogaea HOM05D003826 ORTHO05D004479 3.7e-74 282.0 175 77.7
A09p13020 Brassica napus HOM05D003826 ORTHO05D004479 3.7e-74 282.0 201 68.2
CANSAT54G1150 Cannabis sativa HOM05D003826 ORTHO05D004479 3.7e-74 282.0 196 70.9
AL3G45800 Arabidopsis lyrata HOM05D003826 ORTHO05D004479 4.8e-74 281.6 198 69.2
VMungo0540G1729 Vigna mungo HOM05D003826 ORTHO05D004479 6.3e-74 281.2 171 77.2
Glyma.13G256700 Glycine max HOM05D003826 ORTHO05D004479 8.2e-74 280.8 171 76.6
GSVIVG01015652001 Vitis vinifera HOM05D003826 ORTHO05D004479 1.4e-73 280.0 163 80.4
MBI16_g12461_MAGBIO Magnolia biondii HOM05D003826 ORTHO05D004479 1.8e-73 279.6 174 78.2
PGSC0003DMG400033580 Solanum tuberosum HOM05D003826 ORTHO05D004479 2.4e-73 279.3 175 74.3
Sed0018824 Sechium edule HOM05D003826 ORTHO05D004479 3.1e-73 278.9 196 69.4
Sc18g0007060 Simmondsia chinensis HOM05D003826 ORTHO05D004479 3.1e-73 278.9 173 75.7
MSTRG.27816 Avicennia marina HOM05D003826 ORTHO05D004479 4.1e-73 278.5 175 74.3
Solyc01g105970.3 Solanum lycopersicum HOM05D003826 ORTHO05D004479 4.1e-73 278.5 175 74.3
Sopen01g048350 Solanum pennellii HOM05D003826 ORTHO05D004479 4.1e-73 278.5 175 74.3
TPR.G9500 Trifolium pratense HOM05D003826 ORTHO05D004479 4.1e-73 278.5 177 75.7
Dinv24149 Davidia involucrata HOM05D003826 ORTHO05D004479 7.0e-73 277.7 168 80.4
CAN.G997.2 Capsicum annuum HOM05D003826 ORTHO05D004479 1.2e-72 276.9 175 73.1
Medtr2g009600 Medicago truncatula HOM05D003826 ORTHO05D004479 3.5e-72 275.4 171 76.0
Psat1g214120 Pisum sativum HOM05D003826 ORTHO05D004479 5.9e-72 274.6 171 76.0
Nitab4.5_0011038g0020 Nicotiana tabacum HOM05D003826 ORTHO05D004479 1.3e-71 273.5 175 73.1
Migut.B00552 Erythranthe guttata HOM05D003826 ORTHO05D004479 2.2e-71 272.7 173 73.4
HanXRQChr08g0227191 Helianthus annuus HOM05D003826 ORTHO05D004479 5.0e-71 271.6 173 71.7
Lj6g0003535 Lotus japonicus HOM05D003826 ORTHO05D004479 5.0e-71 271.6 171 74.3
TAR376G0575 Trochodendron aralioides HOM05D003826 ORTHO05D004479 5.0e-71 271.6 173 75.1
PSO541G0595 Papaver somniferum HOM05D003826 ORTHO05D004479 1.1e-70 270.4 174 74.7
ECA236G1467 Erigeron canadensis HOM05D003826 ORTHO05D000778 1.5e-70 270.0 173 72.3
COL.COLO4_32389 Corchorus olitorius HOM05D003826 ORTHO05D004479 4.2e-70 268.5 196 68.9
Aqoxy6G00874 Aquilegia oxysepala HOM05D003826 ORTHO05D004479 9.4e-70 267.3 170 76.5
Ca_00163_v3 Cicer arietinum L. HOM05D003826 ORTHO05D004479 1.2e-69 266.9 171 75.4
Lalb_Chr16g0382941 Lupinus albus HOM05D003826 ORTHO05D004479 1.6e-69 266.5 162 77.2
CSS0050337 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 2.1e-69 266.2 162 77.8
Nitab4.5_0008998g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 2.1e-69 266.2 173 71.1
Os03g0737400 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 2.7e-69 265.8 173 71.7
PGSC0003DMG400031403 Solanum tuberosum HOM05D003826 ORTHO05D004479 4.7e-69 265.0 173 71.7
Migut.N01096 Erythranthe guttata HOM05D003826 ORTHO05D004479 1.0e-68 263.8 172 71.5
Lj5A230G39 Lonicera japonica HOM05D003826 ORTHO05D004479 1.4e-68 263.5 158 79.1
Nitab4.5_0002017g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 1.4e-68 263.5 173 70.5
Zm00001eb215290 Zea mays HOM05D003826 ORTHO05D004479 1.8e-68 263.1 163 75.5
unitig_37.g12793 Utricularia gibba HOM05D003826 ORTHO05D004479 3.0e-68 262.3 174 67.2
EL10Ac9g22073 Beta vulgaris HOM05D003826 ORTHO05D004479 6.8e-68 261.2 162 74.7
Phvul.002G212900 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 1.2e-67 260.4 170 71.2
DCAR_003601 Daucus carota HOM05D003826 ORTHO05D004479 1.5e-67 260.0 172 73.8
CDE04G3107 Ceratophyllum demersum HOM05D003826 ORTHO05D004479 3.4e-67 258.8 163 76.1
Phvul.006G202000 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 3.4e-67 258.8 168 73.2
Peaxi162Scf00003g03230 Petunia axillaris HOM05D003826 ORTHO05D004479 5.7e-67 258.1 173 71.1
Gorai.008G017400 Gossypium raimondii HOM05D003826 ORTHO05D004479 7.5e-67 257.7 173 72.8
Lj4g0024713 Lotus japonicus HOM05D003826 ORTHO05D004479 3.7e-66 255.4 158 75.9
Duzib147G0892 Durio zibethinus HOM05D003826 ORTHO05D004479 6.3e-66 254.6 158 76.6
Medtr4g093560 Medicago truncatula HOM05D003826 ORTHO05D004479 1.4e-65 253.4 172 70.3
Gohir.D12G017100 Gossypium hirsutum HOM05D003826 ORTHO05D004479 3.1e-65 252.3 176 71.0
unitig_46.g18833 Utricularia gibba HOM05D003826 ORTHO05D004479 4.1e-65 251.9 163 71.2
PGR102G1409 Punica granatum HOM05D003826 ORTHO05D004479 5.4e-65 251.5 159 76.1
Glyma.07G181900 Glycine max HOM05D003826 ORTHO05D004479 2.0e-64 249.6 170 67.1
arahy.Tifrunner.gnm1.ann1.JLXM4S Arachis hypogaea HOM05D003826 ORTHO05D004479 3.5e-64 248.8 161 72.7
arahy.Tifrunner.gnm1.ann1.QQ8XF2 Arachis hypogaea HOM05D003826 ORTHO05D004479 3.5e-64 248.8 161 72.7
Thecc.01G090400 Theobroma cacao HOM05D003826 ORTHO05D004479 4.5e-64 248.4 159 74.8
Cpa.g.sc55.25 Carica papaya HOM05D003826 ORTHO05D004479 7.7e-64 247.7 170 69.4
Lalb_Chr05g0216361 Lupinus albus HOM05D003826 ORTHO05D004479 1.0e-63 247.3 162 72.2
Dinv13602 Davidia involucrata HOM05D003826 ORTHO05D004479 3.8e-63 245.4 158 72.8
Manes.12G126200 Manihot esculenta HOM05D003826 ORTHO05D004479 6.6e-63 244.6 170 70.6
Psat7g101120 Pisum sativum HOM05D003826 ORTHO05D004479 8.6e-63 244.2 172 69.2
Hma1.2p1_1058F.1_g252870 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 1.9e-62 243.0 159 71.7
Ah.03g139970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 2.5e-62 242.7 158 70.9
Atru.chr3.1247 Acer truncatum HOM05D003826 ORTHO05D004479 4.2e-62 241.9 160 70.6
Cfa006882 Carpinus fangiana HOM05D003826 ORTHO05D004479 5.5e-62 241.5 160 71.2
arahy.Tifrunner.gnm1.ann1.8NDV1J Arachis hypogaea HOM05D003826 ORTHO05D004479 2.1e-61 239.6 170 65.9
Haze_03870 Corylus avellana HOM05D003826 ORTHO05D004479 3.6e-61 238.8 160 70.0
Prupe.6G201600 Prunus persica HOM05D003826 ORTHO05D004479 4.7e-61 238.4 159 71.7
TPR.G2887 Trifolium pratense HOM05D003826 ORTHO05D004479 6.1e-61 238.0 172 65.1
Cc07_g14100 Coffea canephora HOM05D003826 ORTHO05D004479 8.0e-61 237.7 171 66.7
Lsat_1_v5_gn_7_82781 Lactuca sativa HOM05D003826 ORTHO05D004479 8.0e-61 237.7 162 72.2
arahy.Tifrunner.gnm1.ann1.MWC9N2 Arachis hypogaea HOM05D001561 ORTHO05D001715 5.2e-60 235.0 170 65.9
CiPaw.07G047500 Carya illinoinensis HOM05D003826 ORTHO05D004479 1.5e-59 233.4 160 70.0
HPP92_016899 Vanilla planifolia HOM05D003826 ORTHO05D004479 1.5e-59 233.4 165 67.3
AT2G14110 Arabidopsis thaliana HOM05D003826 ORTHO05D004479 4.4e-59 231.9 134 79.1
MD01G1039300 Malus domestica HOM05D003826 ORTHO05D004479 7.5e-59 231.1 159 67.9
SGA_v2.0_scaffold83G26375 Striga asiatica HOM05D003826 ORTHO05D004479 9.8e-59 230.7 134 79.1
SEGI_37389 Sequoiadendron giganteum HOM05D003826 ORTHO05D004479 3.7e-58 228.8 160 66.2
Peaxi162Scf00299g00634 Petunia axillaris HOM05D003826 ORTHO05D004479 9.2e-57 224.2 175 62.9
AagrBONN_evm.TU.Sc2ySwM_362.1195 Anthoceros agrestis HOM05D003826 ORTHO05D004479 1.7e-55 219.9 160 65.0
FvH4_1g19640 Fragaria vesca HOM05D003826 ORTHO05D004479 2.9e-55 219.2 160 66.9
FAN19G1458 Fragaria x ananassa HOM05D003826 ORTHO05D004479 2.9e-55 219.2 160 66.9
FAN23G0964 Fragaria x ananassa HOM05D003826 ORTHO05D004479 5.0e-55 218.4 160 66.9
FAN26G3235 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.1e-54 217.2 160 66.2
SMO271G0099 Selaginella moellendorffii HOM05D003826 ORTHO05D004479 5.6e-54 214.9 159 62.9
AUR62003663 Chenopodium quinoa HOM05D003826 ORTHO05D004479 7.3e-54 214.5 159 63.5
Nitab4.5_0002095g0060 Nicotiana tabacum HOM05D003826 ORTHO05D004479 1.2e-53 213.8 141 70.2
Os03g0737300 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 4.7e-53 211.8 163 62.0
Mapoly0042s0019 Marchantia polymorpha HOM05D003826 ORTHO05D004479 6.1e-53 211.5 156 65.4
FAN28G0881 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.0e-52 210.7 174 62.1
GSVIVG01015647001 Vitis vinifera HOM05D003826 ORTHO05D004479 1.2e-51 207.2 129 80.6
CANSAT01G0714 Cannabis sativa HOM05D003826 ORTHO05D004479 1.5e-51 206.8 163 62.0
Glyma.15G058200 Glycine max HOM05D003826 ORTHO05D004479 2.6e-51 206.1 165 62.4
Pp3c1_28610 Physcomitrium patens HOM05D003826 ORTHO05D004479 2.6e-51 206.1 162 60.5
Lj5A230G40 Lonicera japonica HOM05D003826 ORTHO05D004479 3.7e-50 202.2 159 63.5
SalBow6G1284 Salvia bowleyana HOM05D003826 ORTHO05D004479 1.9e-49 199.9 145 67.6
Mapoly0032s0046 Marchantia polymorpha HOM05D003826 ORTHO05D004479 2.4e-49 199.5 164 56.7
RcHm_v2.0_Chr2g0111211 Rosa chinensis HOM05D003826 ORTHO05D004479 1.2e-48 197.2 166 62.0
SalBow8G4107 Salvia bowleyana HOM05D003826 ORTHO05D004479 1.1e-46 190.7 196 54.1
Hund00378 Selenicereus undatus HOM05D003826 ORTHO05D004479 1.1e-46 190.7 135 70.4
RhsimUnG0154900 Rhododendron simsii HOM05D003826 ORTHO05D004479 5.6e-46 188.3 166 60.2
Os11g0434000 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 9.5e-46 187.6 159 60.4
Hund16529 Selenicereus undatus HOM05D003826 ORTHO05D004479 8.0e-45 184.5 125 71.2
ATR0767G074 Amborella trichopoda HOM05D003826 ORTHO05D004479 4.0e-44 182.2 119 72.3
ATR0767G082 Amborella trichopoda HOM05D003826 ORTHO05D004479 2.6e-43 179.5 129 65.9
CBR_g26273 Chara braunii HOM05D003826 ORTHO05D004479 7.5e-43 177.9 157 52.9
Ah.01g023970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 2.2e-42 176.4 163 54.6
AUR62012887 Chenopodium quinoa HOM05D003826 ORTHO05D004479 6.4e-42 174.9 162 55.6
AUR62027111 Chenopodium quinoa HOM05D003826 ORTHO05D004479 1.9e-41 173.3 169 53.3
GSVIVG01015646001 Vitis vinifera HOM05D003826 ORTHO05D004479 2.7e-40 169.5 116 75.9
Nn5g29884 Nelumbo nucifera HOM05D003826 ORTHO05D004479 3.4e-35 152.5 90 80.0
AUR62017972 Chenopodium quinoa HOM05D003826 ORTHO05D004479 9.9e-35 151.0 97 72.2
Solyc10g047310.1 Solanum lycopersicum HOM05D003826 ORTHO05D004479 9.2e-33 144.4 94 70.2
VMungo0251G2759 Vigna mungo HOM05D003826 ORTHO05D004479 4.6e-32 142.1 91 70.3
Ciclev10026755m.g Citrus clementina HOM05D003826 ORTHO05D004479 3.9e-31 139.0 93 74.2
Mapoly0010s0051 Marchantia polymorpha HOM05D003826 ORTHO05D004479 1.1e-28 131.0 148 43.2
Lalb_Chr18g0060401 Lupinus albus HOM05D003826 ORTHO05D004479 1.4e-28 130.6 175 43.4
MD10G1054300 Malus domestica HOM05D003826 ORTHO05D004479 3.4e-27 125.9 73 79.5
Mapoly0042s0017 Marchantia polymorpha HOM05D003826 ORTHO05D004479 2.6e-19 99.8 79 60.8
Gohir.D13G049650 Gossypium hirsutum HOM05D003826 ORTHO05D004479 5.6e-14 82.0 76 57.9
FAN15G0689 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.4e-12 77.4 36 100.0
Sopen10g017590 Solanum pennellii HOM05D000002 ORTHO05D000001 4.0e-12 75.9 69 55.1
THA.LOC104824951 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 5.3e-12 75.5 106 43.4
MCO11G520 Micromonas commoda HOM05D003826 ORTHO05D004479 3.4e-11 72.8 174 31.6
Dinv36604 Davidia involucrata HOM05D003826 ORTHO05D004479 2.9e-10 69.7 36 86.1
Glyma.08G067900 Glycine max HOM05D003826 ORTHO05D004479 3.2e-09 66.2 80 42.5
MCO09G863 Micromonas commoda HOM05D003826 ORTHO05D004479 7.1e-09 65.1 176 28.4
Gorai.002G159200 Gossypium raimondii HOM05D028424 ORTHO05D219023 1.2e-08 64.3 32 90.6
Gorai.008G076300 Gossypium raimondii HOM05D001733 ORTHO05D047820 3.9e-07 59.3 32 84.4
Cre09.g401738 Chlamydomonas reinhardtii HOM05D003826 ORTHO05D004479 5.1e-07 58.9 172 29.1
Gohir.D12G069601 Gossypium hirsutum HOM05D001733 ORTHO05D047820 6.7e-07 58.5 32 81.2
CANSAT01G2972 Cannabis sativa HOM05D000003 ORTHO05D000004 1.5e-06 57.4 39 64.1


User provided reference genes

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