Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g10631 Fragaria vesca HOM05D003854 ORTHO05D004415 8.0e-143 510.4 252 100.0
FAN24G1697 Fragaria x ananassa HOM05D003854 ORTHO05D004415 4.1e-131 471.5 288 84.0
FAN15G1017 Fragaria x ananassa HOM05D003854 ORTHO05D004415 9.3e-99 364.0 277 66.4
RcHm_v2.0_Chr6g0268321 Rosa chinensis HOM05D003854 ORTHO05D004415 4.6e-98 361.7 220 80.9
FvH4_2g10640 Fragaria vesca HOM05D003854 ORTHO05D004415 3.9e-97 358.6 277 65.7
FAN27G2026 Fragaria x ananassa HOM05D003854 ORTHO05D004415 3.9e-97 358.6 277 65.7
Prupe.8G083500 Prunus persica HOM05D003854 ORTHO05D004415 3.3e-96 355.5 269 69.9
MD05G1054700 Malus domestica HOM05D003854 ORTHO05D004415 2.8e-95 352.4 276 66.7
MD10G1062200 Malus domestica HOM05D003854 ORTHO05D004415 4.8e-95 351.7 276 66.3
RcHm_v2.0_Chr6g0268341 Rosa chinensis HOM05D003854 ORTHO05D004415 4.0e-94 348.6 277 66.1
Hma1.2p1_0218F.1_g092290 Hydrangea macrophylla HOM05D003854 ORTHO05D004415 1.0e-89 334.0 273 62.6
TAR376G0190 Trochodendron aralioides HOM05D003854 ORTHO05D004415 8.7e-89 330.9 276 62.7
Haze_02230 Corylus avellana HOM05D003854 ORTHO05D004415 1.9e-88 329.7 276 63.4
Nn5g29249 Nelumbo nucifera HOM05D003854 ORTHO05D004415 1.9e-88 329.7 276 62.3
Potri.009G125200 Populus trichocarpa HOM05D003854 ORTHO05D004415 2.5e-88 329.3 277 62.1
QL11p046566 Quercus lobata HOM05D003854 ORTHO05D004415 3.3e-88 328.9 276 62.7
CANSAT11G1548 Cannabis sativa HOM05D003854 ORTHO05D004415 1.3e-87 327.0 276 61.6
Atru.chr5.3170 Acer truncatum HOM05D003854 ORTHO05D004415 4.8e-87 325.1 277 61.7
Sabra09G0096200 Salix brachista HOM05D003854 ORTHO05D004415 1.1e-86 323.9 279 60.9
Hma1.2p1_0066F.1_g035740 Hydrangea macrophylla HOM05D003854 ORTHO05D004415 1.5e-85 320.1 276 60.5
CsaV3_7G000470 Cucumis sativus L. HOM05D003854 ORTHO05D004415 5.8e-85 318.2 276 61.2
Sp3g29800 Schrenkiella parvula HOM05D003854 ORTHO05D004415 1.0e-84 317.4 276 58.7
Potri.004G163600 Populus trichocarpa HOM05D003854 ORTHO05D004415 1.3e-84 317.0 276 59.4
PGR042G3425 Punica granatum HOM05D003854 ORTHO05D004415 1.7e-84 316.6 273 59.3
CiPaw.06G127600 Carya illinoinensis HOM05D003854 ORTHO05D004415 2.2e-84 316.2 279 60.2
COL.COLO4_10619 Corchorus olitorius HOM05D003854 ORTHO05D004415 2.2e-84 316.2 274 60.6
Ciclev10028796m.g Citrus clementina HOM05D003854 ORTHO05D004415 4.9e-84 315.1 276 60.1
THA.LOC104807290 Tarenaya hassleriana HOM05D003854 ORTHO05D004415 8.4e-84 314.3 276 58.7
vmacro17417 Vaccinium macrocarpon HOM05D003854 ORTHO05D004415 1.9e-83 313.2 276 60.1
PSO541G5287 Papaver somniferum HOM05D003854 ORTHO05D004415 2.5e-83 312.8 279 59.1
Actinidia20473 Actinidia chinensis HOM05D003854 ORTHO05D004415 3.2e-83 312.4 276 60.1
GSVIVG01024163001 Vitis vinifera HOM05D003854 ORTHO05D004415 3.2e-83 312.4 276 60.1
MELO3C002788.2 Cucumis melo HOM05D003854 ORTHO05D004415 4.2e-83 312.0 274 60.6
Rhsim05G0067900 Rhododendron simsii HOM05D003854 ORTHO05D004415 5.5e-83 311.6 279 58.1
BcaB03g16370 Brassica carinata HOM05D003854 ORTHO05D004415 1.2e-82 310.5 276 58.7
ClCG02G004480 Citrullus lanatus HOM05D003854 ORTHO05D004415 1.2e-82 310.5 276 59.8
BraA09t36743Z Brassica rapa HOM05D003854 ORTHO05D004415 7.9e-82 307.8 252 61.1
Solyc01g110460.4 Solanum lycopersicum HOM05D003854 ORTHO05D004415 1.0e-81 307.4 275 58.5
Sed0011434 Sechium edule HOM05D003854 ORTHO05D004415 1.8e-81 306.6 274 59.5
EL10Ac9g21623 Beta vulgaris HOM05D003854 ORTHO05D004415 3.9e-81 305.4 275 58.2
Thhalv10022773m.g Eutrema salsugineum HOM05D003854 ORTHO05D004415 3.9e-81 305.4 276 57.6
Eucgr.G01738 Eucalyptus grandis HOM05D003854 ORTHO05D004415 6.7e-81 304.7 276 57.6
Sopen01g052590 Solanum pennellii HOM05D003854 ORTHO05D004415 6.7e-81 304.7 275 58.2
C07p07190 Brassica napus HOM05D003854 ORTHO05D004415 4.3e-80 302.0 276 56.5
Ca_20939_v3 Cicer arietinum L. HOM05D003854 ORTHO05D004415 4.3e-80 302.0 272 58.5
AL6G49210 Arabidopsis lyrata HOM05D003854 ORTHO05D004415 5.7e-80 301.6 276 55.8
COL.COLO4_21950 Corchorus olitorius HOM05D003854 ORTHO05D004415 7.4e-80 301.2 276 57.2
Duzib187G0007 Durio zibethinus HOM05D003854 ORTHO05D004415 1.3e-79 300.4 276 56.5
PSO675G2881 Papaver somniferum HOM05D003854 ORTHO05D004415 1.3e-79 300.4 279 55.9
Duzib248G1248 Durio zibethinus HOM05D003854 ORTHO05D004415 1.6e-79 300.1 274 57.7
BolC7t41138H Brassica oleracea HOM05D003854 ORTHO05D004415 2.2e-79 299.7 276 56.2
AUR62016846 Chenopodium quinoa HOM05D003854 ORTHO05D004415 2.2e-79 299.7 274 58.0
Lalb_Chr01g0002121 Lupinus albus HOM05D003854 ORTHO05D004415 2.2e-79 299.7 270 59.3
arahy.Tifrunner.gnm1.ann1.QESS4Q Arachis hypogaea HOM05D003854 ORTHO05D004415 2.8e-79 299.3 272 58.5
Lsat_1_v5_gn_3_44581 Lactuca sativa HOM05D003854 ORTHO05D004415 2.8e-79 299.3 275 57.5
Sp3g29790 Schrenkiella parvula HOM05D003854 ORTHO05D004415 2.8e-79 299.3 277 56.7
GSVIVG01018810001 Vitis vinifera HOM05D003854 ORTHO05D004415 2.8e-79 299.3 275 58.5
AT2G16530 Arabidopsis thaliana HOM05D003854 ORTHO05D004415 3.7e-79 298.9 276 56.2
Phvul.011G038300 Phaseolus vulgaris HOM05D003854 ORTHO05D004415 3.7e-79 298.9 272 56.6
HanXRQChr15g0478351 Helianthus annuus HOM05D003854 ORTHO05D004415 4.8e-79 298.5 275 56.4
AL3G49110 Arabidopsis lyrata HOM05D003854 ORTHO05D004415 6.3e-79 298.1 276 55.8
Oeu060416.1 Olea europaea HOM05D003854 ORTHO05D004415 8.2e-79 297.7 276 56.2
BcaC04g23013 Brassica carinata HOM05D003854 ORTHO05D004415 1.1e-78 297.4 252 60.3
BcaC04g23014 Brassica carinata HOM05D003854 ORTHO05D004415 1.1e-78 297.4 252 60.3
C09p13040 Brassica napus HOM05D003854 ORTHO05D004415 1.1e-78 297.4 252 60.3
ECA248G3380 Erigeron canadensis HOM05D003854 ORTHO05D004415 1.1e-78 297.4 275 55.6
Hund00184 Selenicereus undatus HOM05D003854 ORTHO05D004415 1.8e-78 296.6 274 55.5
Aqoxy6G02342 Aquilegia oxysepala HOM05D003854 ORTHO05D004415 2.4e-78 296.2 275 55.3
TPR.G28160 Trifolium pratense HOM05D003854 ORTHO05D004415 3.1e-78 295.8 272 58.5
arahy.Tifrunner.gnm1.ann1.3VNM1Z Arachis hypogaea HOM05D003854 ORTHO05D004415 4.1e-78 295.4 272 57.0
Thecc.01G021700 Theobroma cacao HOM05D003854 ORTHO05D004415 4.1e-78 295.4 276 56.9
BolC9t54197H Brassica oleracea HOM05D003854 ORTHO05D004415 5.3e-78 295.0 253 59.7
Glyma.11G110300 Glycine max HOM05D003854 ORTHO05D004415 5.3e-78 295.0 272 57.0
CARHR106750 Cardamine hirsuta HOM05D003854 ORTHO05D004415 6.9e-78 294.7 272 56.2
MSTRG.16879 Avicennia marina HOM05D003854 ORTHO05D004415 1.2e-77 293.9 276 57.2
Cc02_g16850 Coffea canephora HOM05D003854 ORTHO05D004415 1.2e-77 293.9 276 55.4
Manes.04G064400 Manihot esculenta HOM05D003854 ORTHO05D004415 1.2e-77 293.9 272 58.1
TWI38G0305 Tripterygium wilfordii HOM05D003854 ORTHO05D004415 1.2e-77 293.9 275 56.4
Thhalv10000231m.g Eutrema salsugineum HOM05D003854 ORTHO05D004415 1.5e-77 293.5 274 54.7
Gohir.A02G169600 Gossypium hirsutum HOM05D003854 ORTHO05D004415 1.5e-77 293.5 276 54.3
Gohir.A10G241100 Gossypium hirsutum HOM05D003854 ORTHO05D004415 1.5e-77 293.5 276 55.4
Gorai.011G293600 Gossypium raimondii HOM05D003854 ORTHO05D004415 2.0e-77 293.1 276 55.4
arahy.Tifrunner.gnm1.ann1.JJ9I6U Arachis hypogaea HOM05D003854 ORTHO05D004415 2.6e-77 292.7 272 56.6
Cpa.g.sc150.10 Carica papaya HOM05D003854 ORTHO05D004415 2.6e-77 292.7 275 56.0
ECA246G0289 Erigeron canadensis HOM05D003854 ORTHO05D004415 2.6e-77 292.7 275 55.3
A09p11030 Brassica napus HOM05D003854 ORTHO05D004415 3.4e-77 292.4 252 59.1
Medtr4g072070 Medicago truncatula HOM05D003854 ORTHO05D004415 3.4e-77 292.4 272 57.4
Aa31LG8G13840 Aethionema arabicum HOM05D003854 ORTHO05D004415 7.7e-77 291.2 276 55.1
CAN.G170.108 Capsicum annuum HOM05D003854 ORTHO05D004415 7.7e-77 291.2 314 51.9
CiPaw.05G074000 Carya illinoinensis HOM05D003854 ORTHO05D004415 7.7e-77 291.2 241 63.1
Hund00176 Selenicereus undatus HOM05D003854 ORTHO05D004415 1.3e-76 290.4 272 55.5
Gohir.D03G010400 Gossypium hirsutum HOM05D003854 ORTHO05D004415 3.8e-76 288.9 276 53.3
VMungo1127G2166 Vigna mungo HOM05D003854 ORTHO05D004415 3.8e-76 288.9 272 55.9
Thecc.02G073800 Theobroma cacao HOM05D003854 ORTHO05D004415 5.0e-76 288.5 274 56.9
AT1G72590 Arabidopsis thaliana HOM05D003854 ORTHO05D004415 1.1e-75 287.3 255 57.3
Migut.H02258 Erythranthe guttata HOM05D003854 ORTHO05D004415 1.4e-75 287.0 274 56.2
Psat7g139560 Pisum sativum HOM05D003854 ORTHO05D004415 1.4e-75 287.0 272 56.6
Gorai.003G010800 Gossypium raimondii HOM05D003854 ORTHO05D004415 1.9e-75 286.6 276 52.9
Aqoxy3G00105 Aquilegia oxysepala HOM05D003854 ORTHO05D004415 2.5e-75 286.2 257 57.2
BraA07t28241Z Brassica rapa HOM05D003854 ORTHO05D004415 5.5e-75 285.0 255 56.9
Aa31LG10G12850 Aethionema arabicum HOM05D003854 ORTHO05D004415 9.4e-75 284.3 276 55.4
arahy.Tifrunner.gnm1.ann1.29MT7J Arachis hypogaea HOM05D003854 ORTHO05D004415 9.4e-75 284.3 272 55.5
A03p45890 Brassica napus HOM05D003854 ORTHO05D004415 1.2e-74 283.9 250 59.2
SGA_v2.0_scaffold2G00942 Striga asiatica HOM05D003854 ORTHO05D004415 1.6e-74 283.5 270 55.9
arahy.Tifrunner.gnm1.ann1.E6R97N Arachis hypogaea HOM05D003854 ORTHO05D004415 3.6e-74 282.3 272 55.5
Lj5A188T38 Lonicera japonica HOM05D003854 ORTHO05D004415 3.6e-74 282.3 305 51.5
Carub.0003s3031 Capsella rubella HOM05D003854 ORTHO05D004415 6.1e-74 281.6 276 53.3
Lsat_1_v5_gn_3_44301 Lactuca sativa HOM05D003854 ORTHO05D004415 7.9e-74 281.2 251 57.8
A03p45880 Brassica napus HOM05D003854 ORTHO05D004415 1.4e-73 280.4 260 56.9
Lj3g0001283 Lotus japonicus HOM05D003854 ORTHO05D004415 3.0e-73 279.3 302 52.0
Duzib147G1035 Durio zibethinus HOM05D003854 ORTHO05D004415 8.8e-73 277.7 327 48.9
BcaC06g36152 Brassica carinata HOM05D003854 ORTHO05D004415 1.5e-72 276.9 276 53.3
MBI19_g04330_MAGBIO Magnolia biondii HOM05D003854 ORTHO05D004415 7.4e-72 274.6 275 54.2
ATR0149G029 Amborella trichopoda HOM05D003854 ORTHO05D004415 1.3e-71 273.9 277 52.7
Gohir.D10G253300 Gossypium hirsutum HOM05D003854 ORTHO05D004415 1.3e-71 273.9 264 54.2
Thecc.10G037600 Theobroma cacao HOM05D003854 ORTHO05D004415 1.7e-71 273.5 267 54.3
SalBow3G0187 Salvia bowleyana HOM05D003854 ORTHO05D004415 2.2e-71 273.1 281 52.0
Nitab4.5_0005266g0010 Nicotiana tabacum HOM05D003854 ORTHO05D004415 4.8e-71 271.9 259 56.0
BcaB08g34654 Brassica carinata HOM05D003854 ORTHO05D004415 1.4e-70 270.4 246 55.7
BcaC01g03007 Brassica carinata HOM05D003854 ORTHO05D004415 1.4e-70 270.4 257 55.6
C03p57250 Brassica napus HOM05D003854 ORTHO05D004415 1.4e-70 270.4 257 55.6
BraA03t13718Z Brassica rapa HOM05D003854 ORTHO05D004415 1.3e-68 263.8 281 51.6
Eucgr.H01470 Eucalyptus grandis HOM05D003854 ORTHO05D004415 2.9e-68 262.7 204 63.2
Dinv41992 Davidia involucrata HOM05D003854 ORTHO05D004415 1.1e-67 260.8 198 65.7
HPP92_014428 Vanilla planifolia HOM05D003854 ORTHO05D004415 1.2e-66 257.3 262 51.9
BcaC01g03005 Brassica carinata HOM05D003854 ORTHO05D004415 1.8e-65 253.4 251 51.8
CDE04G0582 Ceratophyllum demersum HOM05D003854 ORTHO05D004415 5.1e-65 251.9 270 50.0
Gorai.001G243600 Gossypium raimondii HOM05D003854 ORTHO05D004415 1.3e-63 247.3 249 54.2
Gohir.D13G096525 Gossypium hirsutum HOM05D003854 ORTHO05D004415 1.7e-63 246.9 256 53.5
Sp3g29780 Schrenkiella parvula HOM05D003854 ORTHO05D004415 5.3e-62 241.9 191 63.4
Ah.01g018700 Amaranthus hybridus HOM05D003854 ORTHO05D004415 7.0e-62 241.5 287 48.4
SEGI_09637 Sequoiadendron giganteum HOM05D003854 ORTHO05D004415 1.2e-61 240.7 278 48.2
Os04g0576800 Oryza sativa ssp. japonica HOM05D003854 ORTHO05D004415 2.6e-61 239.6 264 50.4
CSS0003544 Camellia sinensis var. sinensis HOM05D003854 ORTHO05D004415 5.9e-61 238.4 177 67.2
Zm00001eb428540 Zea mays HOM05D003854 ORTHO05D004415 1.7e-60 236.9 283 48.1
Nitab4.5_0008276g0050 Nicotiana tabacum HOM05D003854 ORTHO05D004415 2.2e-60 236.5 228 53.5
C03p57260 Brassica napus HOM05D003854 ORTHO05D004415 5.5e-59 231.9 251 49.4
BolC3t18002H Brassica oleracea HOM05D003854 ORTHO05D004415 5.5e-59 231.9 251 49.4
Lsat_1_v5_gn_3_44541 Lactuca sativa HOM05D003854 ORTHO05D004415 1.2e-58 230.7 253 52.6
Os07g0493400 Oryza sativa ssp. japonica HOM05D003854 ORTHO05D004415 1.1e-56 224.2 283 47.3
Sc18g0005420 Simmondsia chinensis HOM05D003854 ORTHO05D004415 2.6e-53 213.0 272 46.7
arahy.Tifrunner.gnm1.ann1.EIL6RR Arachis hypogaea HOM05D003854 ORTHO05D004415 9.4e-51 204.5 250 49.6
FAN15G1606 Fragaria x ananassa HOM05D003854 ORTHO05D004415 4.7e-50 202.2 160 70.0
arahy.Tifrunner.gnm1.ann1.DJ2H3Y Arachis hypogaea HOM05D003854 ORTHO05D004415 1.8e-49 200.3 296 43.9
Atru.chr5.3157 Acer truncatum HOM05D003854 ORTHO05D004415 7.5e-48 194.9 151 62.9
BolC3t18001H Brassica oleracea HOM05D003854 ORTHO05D004415 2.8e-47 193.0 305 40.7
SMO367G0753 Selaginella moellendorffii HOM05D003854 ORTHO05D004415 4.1e-46 189.1 276 40.6
Peaxi162Scf00016g00041 Petunia axillaris HOM05D003854 ORTHO05D004415 5.3e-46 188.7 303 40.9
Glyma.12G036600 Glycine max HOM05D003854 ORTHO05D004415 1.9e-43 180.3 195 50.8
HanXRQChr17g0544071 Helianthus annuus HOM05D003854 ORTHO05D004415 3.2e-43 179.5 247 43.7
A07p04500 Brassica napus HOM05D003854 ORTHO05D004415 1.6e-42 177.2 275 40.4
AUR62010373 Chenopodium quinoa HOM05D003854 ORTHO05D004415 1.4e-41 174.1 139 60.4
Zm00001eb073390 Zea mays HOM05D003854 ORTHO05D004415 2.3e-41 173.3 213 45.5
Gohir.A13G086490 Gossypium hirsutum HOM05D003854 ORTHO05D004415 3.5e-37 159.5 185 50.3
unitig_32.g11228 Utricularia gibba HOM05D003854 ORTHO05D004415 1.9e-35 153.7 159 49.1
Pp3c2_14820 Physcomitrium patens HOM05D003854 ORTHO05D004415 2.5e-35 153.3 302 35.8
Mapoly0130s0019 Marchantia polymorpha HOM05D003854 ORTHO05D004415 2.1e-34 150.2 289 36.0
FAN20G2911 Fragaria x ananassa HOM05D003854 ORTHO05D004415 2.8e-34 149.8 131 61.8
Atru.chr5.3158 Acer truncatum HOM05D003854 ORTHO05D004415 5.4e-30 135.6 132 58.3
TAR628G1389 Trochodendron aralioides HOM05D003854 ORTHO05D004415 2.7e-29 133.3 124 51.6
CBR_g38102 Chara braunii HOM05D003854 ORTHO05D004415 2.3e-28 130.2 220 36.8
MELO3C028750.2 Cucumis melo HOM05D003854 ORTHO05D004415 2.5e-27 126.7 140 52.1
arahy.Tifrunner.gnm1.ann1.VP2AIV Arachis hypogaea HOM05D003854 ORTHO05D004415 4.3e-27 125.9 124 52.4
DCAR_029109 Daucus carota HOM05D003854 ORTHO05D004415 1.2e-26 124.4 129 54.3
BraA03t13719Z Brassica rapa HOM05D003854 ORTHO05D004415 4.9e-23 112.5 150 47.3
Sabra04G0109800 Salix brachista HOM05D003854 ORTHO05D004415 3.1e-17 93.2 65 67.7
Gohir.A13G086535 Gossypium hirsutum HOM05D003854 ORTHO05D004415 6.8e-17 92.0 59 69.5
Actinidia00577 Actinidia chinensis HOM05D003854 ORTHO05D004415 3.7e-15 86.3 66 63.6
SEGI_30689 Sequoiadendron giganteum HOM05D003854 ORTHO05D004415 4.9e-15 85.9 132 40.9
HanXRQChr17g0544321 Helianthus annuus HOM05D003854 ORTHO05D004415 4.1e-14 82.8 101 46.5
MCO04G152 Micromonas commoda HOM05D003854 ORTHO05D004415 3.9e-12 76.3 254 26.0
Cre17.g720950 Chlamydomonas reinhardtii HOM05D003854 ORTHO05D004415 2.5e-11 73.6 299 27.4
arahy.Tifrunner.gnm1.ann1.1WM9G2 Arachis hypogaea HOM05D003854 ORTHO05D004415 2.9e-07 60.1 41 70.7
RcHm_v2.0_Chr6g0268311 Rosa chinensis HOM05D003854 ORTHO05D004415 8.3e-07 58.5 32 87.5
MELO3C030013.2 Cucumis melo HOM05D008781 ORTHO05D011271 3.2e-06 56.6 73 42.5


User provided reference genes

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