Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g10510 Fragaria vesca HOM05D004210 ORTHO05D005017 6.8e-298 1026.5 512 100.0
FAN24G2713 Fragaria x ananassa HOM05D004210 ORTHO05D005017 5.7e-297 1023.5 512 99.8
FAN15G0031 Fragaria x ananassa HOM05D004210 ORTHO05D005017 2.4e-295 1018.1 512 99.2
FAN27G0821 Fragaria x ananassa HOM05D004210 ORTHO05D005017 1.2e-294 1015.8 517 98.6
FAN20G0431 Fragaria x ananassa HOM05D004210 ORTHO05D005017 1.6e-294 1015.4 512 99.2
RcHm_v2.0_Chr6g0268021 Rosa chinensis HOM05D004210 ORTHO05D005017 2.1e-291 1005.0 512 97.7
Prupe.5G058900 Prunus persica HOM05D004210 ORTHO05D005017 2.3e-269 931.8 512 91.0
CANSAT56G1750 Cannabis sativa HOM05D004210 ORTHO05D005017 3.9e-261 904.4 511 86.9
CiPaw.14G037100 Carya illinoinensis HOM05D004210 ORTHO05D005017 1.8e-258 895.6 512 86.1
MD07G1061200 Malus domestica HOM05D004210 ORTHO05D005017 6.4e-256 887.1 489 90.0
MD02G1259400 Malus domestica HOM05D004210 ORTHO05D005017 1.6e-254 882.5 489 89.0
Dinv04121 Davidia involucrata HOM05D004210 ORTHO05D005017 3.3e-252 874.8 518 83.0
Atru.chr10.436 Acer truncatum HOM05D004210 ORTHO05D005017 3.1e-250 868.2 511 83.8
Haze_03415 Corylus avellana HOM05D004210 ORTHO05D005017 1.3e-248 862.8 514 82.7
Thecc.10G122400 Theobroma cacao HOM05D004210 ORTHO05D005017 3.2e-247 858.2 511 83.2
Potri.019G000900 Populus trichocarpa HOM05D004210 ORTHO05D005017 1.2e-246 856.3 511 81.8
Cpa.g.sc138.49 Carica papaya HOM05D004210 ORTHO05D005017 2.7e-246 855.1 511 82.4
Potri.001G305500 Populus trichocarpa HOM05D004210 ORTHO05D005017 3.5e-246 854.7 511 83.4
Duzib114G0085 Durio zibethinus HOM05D004210 ORTHO05D005017 1.9e-244 849.0 511 82.0
ClCG05G022120 Citrullus lanatus HOM05D004210 ORTHO05D005017 2.5e-244 848.6 516 81.2
MELO3C012312.2 Cucumis melo HOM05D004210 ORTHO05D005017 3.3e-244 848.2 516 80.2
QL04p049870 Quercus lobata HOM05D004210 ORTHO05D005017 9.6e-244 846.7 479 86.2
Manes.13G078700 Manihot esculenta HOM05D004210 ORTHO05D005017 1.6e-243 845.9 511 82.0
COL.COLO4_16323 Corchorus olitorius HOM05D004210 ORTHO05D005017 8.1e-243 843.6 511 81.8
CsaV3_5G035020 Cucumis sativus L. HOM05D004210 ORTHO05D005017 8.1e-243 843.6 516 80.0
Sabra16G0191800 Salix brachista HOM05D004210 ORTHO05D005017 1.8e-242 842.4 511 81.4
Sabra19G0014200 Salix brachista HOM05D004210 ORTHO05D005017 4.5e-241 837.8 524 79.2
Ciclev10014800m.g Citrus clementina HOM05D004210 ORTHO05D005017 5.8e-241 837.4 511 81.0
Sabra19G0005800 Salix brachista HOM05D004210 ORTHO05D005017 1.3e-240 836.3 524 78.8
Rhsim04G0193600 Rhododendron simsii HOM05D004210 ORTHO05D005017 2.2e-240 835.5 520 79.4
Glyma.06G315900 Glycine max HOM05D004210 ORTHO05D005017 1.1e-239 833.2 511 80.4
Glyma.13G124200 Glycine max HOM05D004210 ORTHO05D005017 1.1e-239 833.2 511 80.2
Nn5g30473 Nelumbo nucifera HOM05D004210 ORTHO05D005017 1.1e-239 833.2 518 78.4
vmacro20845 Vaccinium macrocarpon HOM05D004210 ORTHO05D005017 2.4e-239 832.0 520 79.0
Lj8A287G21 Lonicera japonica HOM05D004210 ORTHO05D005017 6.0e-238 827.4 517 78.9
Actinidia18370 Actinidia chinensis HOM05D004210 ORTHO05D005017 7.9e-238 827.0 518 79.2
GSVIVG01018295001 Vitis vinifera HOM05D004210 ORTHO05D005017 3.9e-237 824.7 510 80.0
TAR376G0596 Trochodendron aralioides HOM05D004210 ORTHO05D005017 6.7e-237 823.9 518 78.2
Cc08_g06030 Coffea canephora HOM05D004210 ORTHO05D005017 2.8e-235 818.5 519 77.3
Sed0005167 Sechium edule HOM05D004210 ORTHO05D005017 3.7e-235 818.1 516 78.5
Peaxi162Scf00647g00139 Petunia axillaris HOM05D004210 ORTHO05D005017 1.4e-234 816.2 512 78.1
Phvul.008G161500 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 1.4e-234 816.2 511 79.3
Lj3g0025560 Lotus japonicus HOM05D004210 ORTHO05D005017 4.0e-234 814.7 511 78.7
Glyma.08G229800 Glycine max HOM05D004210 ORTHO05D005017 5.3e-234 814.3 512 79.3
Glyma.05G087400 Glycine max HOM05D004210 ORTHO05D005017 9.0e-234 813.5 511 78.7
Sed0024731 Sechium edule HOM05D004210 ORTHO05D005017 5.8e-233 810.8 516 76.7
MSTRG.20468 Avicennia marina HOM05D004210 ORTHO05D005017 1.0e-232 810.1 506 78.3
arahy.Tifrunner.gnm1.ann1.374KBL Arachis hypogaea HOM05D004210 ORTHO05D005017 1.7e-232 809.3 511 78.5
Phvul.003G276000 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 2.2e-232 808.9 512 78.9
Gohir.A13G003500 Gossypium hirsutum HOM05D004210 ORTHO05D005017 2.9e-232 808.5 516 77.9
arahy.Tifrunner.gnm1.ann1.3JDG4T Arachis hypogaea HOM05D004210 ORTHO05D005017 8.4e-232 807.0 511 78.3
Gorai.013G003300 Gossypium raimondii HOM05D004210 ORTHO05D005017 1.4e-231 806.2 518 78.4
Nitab4.5_0001611g0030 Nicotiana tabacum HOM05D004210 ORTHO05D005017 1.4e-231 806.2 523 76.9
Gohir.D13G003400 Gossypium hirsutum HOM05D004210 ORTHO05D005017 1.9e-231 805.8 518 78.4
TPR.G14605 Trifolium pratense HOM05D004210 ORTHO05D005017 9.3e-231 803.5 511 77.9
CSS0018495 Camellia sinensis var. sinensis HOM05D004210 ORTHO05D005017 4.6e-230 801.2 517 76.8
arahy.Tifrunner.gnm1.ann1.A6SQAT Arachis hypogaea HOM05D004210 ORTHO05D005017 1.8e-229 799.3 511 77.5
VMungo0251G3202 Vigna mungo HOM05D004210 ORTHO05D005017 1.1e-228 796.6 512 77.5
Nitab4.5_0004014g0070 Nicotiana tabacum HOM05D004210 ORTHO05D005017 1.5e-228 796.2 519 76.5
Sc18g0006930 Simmondsia chinensis HOM05D004210 ORTHO05D005017 4.3e-228 794.7 520 75.2
TPR.G24022 Trifolium pratense HOM05D004210 ORTHO05D005017 7.4e-228 793.9 510 76.9
Glyma.04G129500 Glycine max HOM05D004210 ORTHO05D005017 1.3e-227 793.1 487 79.7
Aa31LG8G7780 Aethionema arabicum HOM05D004210 ORTHO05D005017 1.1e-226 790.0 511 76.3
PGR142G1915 Punica granatum HOM05D004210 ORTHO05D005017 1.1e-226 790.0 518 75.5
THA.LOC104804661 Tarenaya hassleriana HOM05D004210 ORTHO05D005017 1.8e-226 789.3 511 75.9
TAR625G1450 Trochodendron aralioides HOM05D004210 ORTHO05D005017 1.8e-226 789.3 515 76.1
Lalb_Chr01g0007661 Lupinus albus HOM05D004210 ORTHO05D005017 2.9e-224 781.9 508 77.0
SalBow4G0418 Salvia bowleyana HOM05D004210 ORTHO05D005017 5.0e-224 781.2 511 75.3
TAR381G0930 Trochodendron aralioides HOM05D004210 ORTHO05D005017 6.5e-224 780.8 469 79.7
Sp3g19020 Schrenkiella parvula HOM05D004210 ORTHO05D005017 8.4e-224 780.4 511 75.5
Medtr8g041740 Medicago truncatula HOM05D004210 ORTHO05D005017 1.1e-223 780.0 511 75.7
Thhalv10020461m.g Eutrema salsugineum HOM05D004210 ORTHO05D005017 1.4e-223 779.6 511 76.1
DCAR_002139 Daucus carota HOM05D004210 ORTHO05D005017 4.2e-223 778.1 515 73.8
Migut.B01123 Erythranthe guttata HOM05D004210 ORTHO05D005017 5.5e-223 777.7 512 75.2
AT3G21060 Arabidopsis thaliana HOM05D004210 ORTHO05D005017 7.2e-223 777.3 511 76.1
Carub.0003s2096 Capsella rubella HOM05D004210 ORTHO05D005017 3.5e-222 775.0 511 76.3
Psat4g180480 Pisum sativum HOM05D004210 ORTHO05D005017 3.5e-222 775.0 513 75.6
Sopen01g040660 Solanum pennellii HOM05D004210 ORTHO05D005017 3.5e-222 775.0 512 75.4
Aqoxy1G00569 Aquilegia oxysepala HOM05D004210 ORTHO05D005017 6.1e-222 774.2 519 74.0
Ca_05576_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 1.8e-221 772.7 548 71.2
Medtr8g045440 Medicago truncatula HOM05D004210 ORTHO05D005017 3.0e-221 771.9 511 75.0
Sabra19G0013500 Salix brachista HOM05D004210 ORTHO05D005017 6.7e-221 770.8 475 79.8
PGSC0003DMG400027522 Solanum tuberosum HOM05D004210 ORTHO05D005017 6.7e-221 770.8 512 74.8
Duzib106G1791 Durio zibethinus HOM05D004210 ORTHO05D005017 5.7e-220 767.7 474 80.4
Solyc01g096950.4 Solanum lycopersicum HOM05D004210 ORTHO05D005017 5.7e-220 767.7 512 74.8
C01p43210 Brassica napus HOM05D004210 ORTHO05D005017 9.7e-220 766.9 510 74.9
BraA01t03490Z Brassica rapa HOM05D004210 ORTHO05D005017 9.7e-220 766.9 511 74.4
Sabra19G0006000 Salix brachista HOM05D004210 ORTHO05D005017 9.7e-220 766.9 475 79.6
BcaC09g49045 Brassica carinata HOM05D004210 ORTHO05D005017 2.8e-219 765.4 510 74.7
BolC1t04267H Brassica oleracea HOM05D004210 ORTHO05D005017 2.4e-218 762.3 510 74.3
PSO541G0139 Papaver somniferum HOM05D004210 ORTHO05D005017 5.3e-218 761.1 521 72.9
Hma1.2p1_0892F.1_g233380 Hydrangea macrophylla HOM05D004210 ORTHO05D005017 2.2e-216 755.7 480 79.4
HPP92_001742 Vanilla planifolia HOM05D004210 ORTHO05D005017 1.1e-215 753.4 519 70.7
ATR0661G188 Amborella trichopoda HOM05D004210 ORTHO05D005017 1.9e-215 752.7 512 71.7
ECA248G0690 Erigeron canadensis HOM05D004210 ORTHO05D005017 1.9e-215 752.7 519 71.7
Lsat_1_v5_gn_4_138820 Lactuca sativa HOM05D004210 ORTHO05D005017 3.2e-215 751.9 519 73.4
Medtr8g045463 Medicago truncatula HOM05D004210 ORTHO05D005017 5.5e-215 751.1 504 73.0
Medtr8g045470 Medicago truncatula HOM05D004210 ORTHO05D005017 5.5e-215 751.1 504 73.0
Oeu012473.1 Olea europaea HOM05D004210 ORTHO05D005017 7.2e-215 750.7 487 76.6
BcaB04g20615 Brassica carinata HOM05D004210 ORTHO05D005017 3.6e-214 748.4 511 73.2
Hund00055 Selenicereus undatus HOM05D004210 ORTHO05D005017 4.6e-214 748.0 598 64.7
Hund06390 Selenicereus undatus HOM05D004210 ORTHO05D005017 1.0e-213 746.9 515 71.3
PSO478G0462 Papaver somniferum HOM05D004210 ORTHO05D005017 1.4e-213 746.5 520 71.5
CARHR096890 Cardamine hirsuta HOM05D004210 ORTHO05D005017 3.9e-213 745.0 511 72.6
Lalb_Chr18g0049111 Lupinus albus HOM05D004210 ORTHO05D005017 5.1e-213 744.6 512 71.7
Oeu027040.1 Olea europaea HOM05D004210 ORTHO05D005017 5.7e-212 741.1 463 78.4
Psat4g200760 Pisum sativum HOM05D004210 ORTHO05D005017 1.3e-211 740.0 508 73.6
CDE07G1685 Ceratophyllum demersum HOM05D004210 ORTHO05D005017 6.3e-211 737.6 518 71.0
CDE04G1921 Ceratophyllum demersum HOM05D004210 ORTHO05D005017 1.2e-209 733.4 518 70.7
AUR62001320 Chenopodium quinoa HOM05D004210 ORTHO05D005017 1.2e-209 733.4 519 69.7
EL10Ac7g18124 Beta vulgaris HOM05D004210 ORTHO05D005017 2.0e-209 732.6 493 74.0
AUR62025703 Chenopodium quinoa HOM05D004210 ORTHO05D005017 7.7e-209 730.7 519 70.1
VMungo0647G0038 Vigna mungo HOM05D004210 ORTHO05D005017 8.5e-208 727.2 476 76.1
Manes.13G077346 Manihot esculenta HOM05D004210 ORTHO05D005017 3.6e-206 721.8 408 85.0
AL3G35010 Arabidopsis lyrata HOM05D004210 ORTHO05D005017 4.7e-206 721.5 511 72.2
HanXRQChr09g0259631 Helianthus annuus HOM05D004210 ORTHO05D005017 9.4e-199 697.2 510 71.4
A01p33790 Brassica napus HOM05D004210 ORTHO05D005017 2.7e-198 695.7 474 73.4
SGA_v2.0_scaffold196G40978 Striga asiatica HOM05D004210 ORTHO05D005017 3.1e-194 682.2 519 66.7
Ca_13103_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 2.0e-193 679.5 525 67.8
AL249U10010 Arabidopsis lyrata HOM05D004210 ORTHO05D005017 2.7e-193 679.1 402 80.1
Zm00001eb007220 Zea mays HOM05D004210 ORTHO05D005017 5.9e-185 651.4 520 62.7
Os03g0207900 Oryza sativa ssp. japonica HOM05D004210 ORTHO05D005017 1.7e-184 649.8 524 62.8
HanXRQChr14g0446551 Helianthus annuus HOM05D004210 ORTHO05D005017 4.5e-177 625.2 486 64.4
ECA238G3001 Erigeron canadensis HOM05D004210 ORTHO05D005017 1.2e-174 617.1 522 61.7
Psat2g059840 Pisum sativum HOM05D004210 ORTHO05D005017 1.4e-173 613.6 526 60.8
TWI75G1118 Tripterygium wilfordii HOM05D004210 ORTHO05D005017 7.5e-164 581.3 496 61.7
Ca_24139_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 1.1e-162 577.4 511 62.0
Mapoly0028s0049 Marchantia polymorpha HOM05D004210 ORTHO05D005017 1.4e-157 560.5 527 55.6
Pp3c12_14420 Physcomitrium patens HOM05D004210 ORTHO05D005017 1.6e-153 547.0 524 54.6
Eucgr.G02654 Eucalyptus grandis HOM05D004210 ORTHO05D005017 4.3e-151 538.9 393 70.5
Lalb_Chr03g0032281 Lupinus albus HOM05D004210 ORTHO05D005017 9.5e-151 537.7 417 68.8
Ca_24147_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 1.6e-145 520.4 354 75.7
Dinv30359 Davidia involucrata HOM05D004210 ORTHO05D005017 2.1e-145 520.0 333 78.1
Phvul.011G184500 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 1.5e-140 503.8 478 57.3
AagrBONN_evm.TU.Sc2ySwM_344.4521 Anthoceros agrestis HOM05D004210 ORTHO05D005017 2.6e-140 503.1 553 49.9
unitig_26.g9497 Utricularia gibba HOM05D004210 ORTHO05D005017 6.4e-139 498.4 375 68.3
AagrBONN_evm.TU.Sc2ySwM_368.940 Anthoceros agrestis HOM05D004210 ORTHO05D005017 2.1e-134 483.4 539 49.0
SMO145G0186 Selaginella moellendorffii HOM05D004210 ORTHO05D005017 1.3e-131 474.2 517 49.9
CSS0025743 Camellia sinensis var. sinensis HOM05D004210 ORTHO05D005017 2.8e-126 456.4 389 64.8
CBR_g10843 Chara braunii HOM05D004210 ORTHO05D005017 7.4e-103 378.6 505 45.1
SEGI_20000 Sequoiadendron giganteum HOM05D004210 ORTHO05D005017 8.2e-102 375.2 308 58.1
CBR_g18561 Chara braunii HOM05D004210 ORTHO05D005017 3.1e-101 373.2 530 41.1
Dinv18710 Davidia involucrata HOM05D004210 ORTHO05D005017 3.7e-86 323.2 282 62.8
Dinv18720 Davidia involucrata HOM05D004210 ORTHO05D005017 7.5e-71 272.3 165 83.0
MBI16_g14436_MAGBIO Magnolia biondii HOM05D004210 ORTHO05D005017 4.7e-65 253.1 309 49.2
Cre03.g195750 Chlamydomonas reinhardtii HOM05D004210 ORTHO05D005017 3.8e-59 233.4 459 31.6
SEGI_15684 Sequoiadendron giganteum HOM05D004210 ORTHO05D005017 3.8e-59 233.4 220 58.2
PRCOL_00000885 Prasinoderma coloniale HOM05D004210 ORTHO05D005017 7.3e-50 202.6 529 31.4
MCO03G571 Micromonas commoda HOM05D004210 ORTHO05D005017 2.6e-47 194.1 436 32.1
Rhsim01G0121500 Rhododendron simsii HOM05D004210 ORTHO05D005017 4.9e-46 189.9 111 84.7
Atru.chr12.1163 Acer truncatum HOM05D004210 ORTHO05D005017 4.1e-45 186.8 91 94.5
Glyma.12G171232 Glycine max HOM05D004210 ORTHO05D013328 1.0e-43 182.2 98 83.7
Pp3c4_7580 Physcomitrium patens HOM05D004210 ORTHO05D005017 1.7e-43 181.4 351 35.3
VMungo1127G1364 Vigna mungo HOM05D004210 ORTHO05D005017 1.2e-41 175.3 169 54.4
Cfa023087 Carpinus fangiana HOM05D004210 ORTHO05D005017 3.6e-41 173.7 435 30.8
Aa31LG8G7760 Aethionema arabicum HOM05D004210 ORTHO05D005017 8.1e-41 172.6 157 59.2
Dinv18721 Davidia involucrata HOM05D004210 ORTHO05D005017 3.1e-40 170.6 157 58.0
Atru.chr12.1162 Acer truncatum HOM05D004210 ORTHO05D005017 6.0e-36 156.4 110 74.5
Manes.13G077544 Manihot esculenta HOM05D004210 ORTHO05D005017 3.3e-34 150.6 121 70.2
Medtr5g069620 Medicago truncatula HOM05D004210 ORTHO05D005017 2.4e-24 117.9 86 60.5
Nn1g02745 Nelumbo nucifera HOM05D000508 ORTHO05D000371 1.0e-19 102.4 164 38.4
Hma1.2p1_0892F.1_g233370 Hydrangea macrophylla HOM05D004210 ORTHO05D005017 3.8e-14 84.0 40 95.0
Nn1g04650 Nelumbo nucifera HOM05D004210 ORTHO05D005017 1.9e-13 81.6 40 90.0
unitig_26.g9496 Utricularia gibba HOM05D004210 ORTHO05D005017 1.0e-11 75.9 45 77.8
Lalb_Chr03g0032271 Lupinus albus HOM05D004210 ORTHO05D005017 1.9e-10 71.6 37 83.8
Medtr3g040320 Medicago truncatula HOM05D004210 ORTHO05D005017 6.2e-09 66.6 57 57.9
SHI06412 Sapria himalayana HOM05D004210 ORTHO05D000023 6.2e-09 66.6 33 84.8
VMungo1215G0985 Vigna mungo HOM05D000464 ORTHO05D006292 8.1e-09 66.2 357 20.2
HPP92_017571 Vanilla planifolia HOM05D005323 ORTHO05D006820 9.0e-08 62.8 288 21.2
HPP92_028318 Vanilla planifolia HOM05D005323 ORTHO05D006820 4.9e-06 57.0 186 24.7
BcaC01g03529 Brassica carinata HOM05D004210 ORTHO05D005017 8.4e-06 56.2 98 40.8


User provided reference genes

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