Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g10200 Fragaria vesca HOM05D004086 ORTHO05D004641 2.2e-227 792.0 410 100.0
RcHm_v2.0_Chr2g0102021 Rosa chinensis HOM05D004086 ORTHO05D004641 3.4e-175 618.6 481 70.5
FAN19G3131 Fragaria x ananassa HOM05D004086 ORTHO05D004641 3.8e-174 615.1 476 71.0
FAN26G0470 Fragaria x ananassa HOM05D004086 ORTHO05D004641 2.1e-169 599.4 475 69.9
FvH4_1g13700 Fragaria vesca HOM05D004086 ORTHO05D004641 3.6e-169 598.6 476 70.2
FAN28G1508 Fragaria x ananassa HOM05D004086 ORTHO05D004641 4.8e-169 598.2 496 68.3
FAN23G2825 Fragaria x ananassa HOM05D004086 ORTHO05D004641 4.2e-165 585.1 500 67.2
FAN24G1278 Fragaria x ananassa HOM05D004086 ORTHO05D004641 2.2e-150 536.2 395 79.0
MD02G1151400 Malus domestica HOM05D004086 ORTHO05D004641 2.2e-110 403.3 479 50.3
Prupe.7G151600 Prunus persica HOM05D004086 ORTHO05D004641 3.8e-110 402.5 486 51.2
CANSAT01G2856 Cannabis sativa HOM05D004086 ORTHO05D004641 3.1e-91 339.7 486 45.1
Duzib264G0994 Durio zibethinus HOM05D004086 ORTHO05D004641 4.3e-85 319.3 490 41.6
Ciclev10025048m.g Citrus clementina HOM05D004086 ORTHO05D004641 1.2e-84 317.8 489 40.7
GSVIVG01018995001 Vitis vinifera HOM05D004086 ORTHO05D004641 1.2e-84 317.8 478 42.9
Thecc.01G039100 Theobroma cacao HOM05D004086 ORTHO05D004641 3.1e-83 313.2 497 41.2
TWI09G1017 Tripterygium wilfordii HOM05D004086 ORTHO05D004641 1.2e-82 311.2 495 41.0
Dinv39963 Davidia involucrata HOM05D004086 ORTHO05D004641 9.2e-80 301.6 466 43.1
Hma1.2p1_0400F.1_g144650 Hydrangea macrophylla HOM05D004086 ORTHO05D004641 9.2e-80 301.6 489 40.1
CiPaw.02G015600 Carya illinoinensis HOM05D004086 ORTHO05D004641 1.2e-79 301.2 487 41.1
MELO3C017544.2 Cucumis melo HOM05D004086 ORTHO05D004641 1.2e-79 301.2 493 40.6
CSS0048181 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 2.7e-79 300.1 483 41.2
CSS0022456 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 4.6e-79 299.3 483 41.2
Manes.07G068600 Manihot esculenta HOM05D004086 ORTHO05D004641 6.0e-79 298.9 501 39.7
Actinidia36545 Actinidia chinensis HOM05D004086 ORTHO05D004641 1.3e-78 297.7 468 41.0
CsaV3_4G005180 Cucumis sativus L. HOM05D004086 ORTHO05D004641 3.0e-78 296.6 497 39.8
Gohir.D11G192200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 1.5e-77 294.3 501 39.5
Gorai.007G205200 Gossypium raimondii HOM05D004086 ORTHO05D004641 1.6e-76 290.8 501 39.3
Potri.007G028600 Populus trichocarpa HOM05D004086 ORTHO05D004641 1.1e-75 288.1 484 40.7
Gohir.A11G185700 Gossypium hirsutum HOM05D004086 ORTHO05D004641 1.8e-75 287.3 508 39.0
Actinidia12113 Actinidia chinensis HOM05D004086 ORTHO05D004641 5.2e-75 285.8 471 41.8
Sed0023254 Sechium edule HOM05D004086 ORTHO05D004641 8.9e-75 285.0 505 37.6
Gohir.D11G227980 Gossypium hirsutum HOM05D004086 ORTHO05D004641 5.8e-74 282.3 501 38.7
QL06p045466 Quercus lobata HOM05D004086 ORTHO05D004641 1.7e-73 280.8 498 40.0
ClCG07G009030 Citrullus lanatus HOM05D004086 ORTHO05D004641 4.6e-71 272.7 490 38.2
COL.COLO4_22111 Corchorus olitorius HOM05D004086 ORTHO05D004641 5.1e-70 269.2 487 38.8
TAR628G1622 Trochodendron aralioides HOM05D004086 ORTHO05D004641 7.3e-69 265.4 477 38.4
Nitab4.5_0008457g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 9.6e-69 265.0 488 38.5
Sabra07G0024800 Salix brachista HOM05D004086 ORTHO05D004641 1.6e-68 264.2 510 37.8
Gohir.D11G227900 Gossypium hirsutum HOM05D004086 ORTHO05D004641 1.1e-67 261.5 428 39.3
Lj5g0019705 Lotus japonicus HOM05D004086 ORTHO05D004641 5.2e-67 259.2 479 37.4
vmacro07910 Vaccinium macrocarpon HOM05D004086 ORTHO05D004641 2.6e-66 256.9 491 38.7
Lalb_Chr20g0123501 Lupinus albus HOM05D004086 ORTHO05D004641 4.4e-66 256.1 485 36.9
COL.COLO4_14865 Corchorus olitorius HOM05D004086 ORTHO05D004641 5.8e-66 255.8 462 39.4
Glyma.11G009900 Glycine max HOM05D004086 ORTHO05D004641 1.7e-65 254.2 502 38.0
VMungo1215G0116 Vigna mungo HOM05D004086 ORTHO05D004641 8.4e-65 251.9 501 34.5
Ca_00390_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 1.4e-64 251.1 507 35.9
MD15G1266000 Malus domestica HOM05D004086 ORTHO05D004641 1.4e-64 251.1 366 43.4
Peaxi162Scf00515g00225 Petunia axillaris HOM05D004086 ORTHO05D004641 3.2e-64 250.0 472 37.3
Medtr5g026040 Medicago truncatula HOM05D004086 ORTHO05D004641 2.7e-63 246.9 484 34.3
Nitab4.5_0010593g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 2.7e-63 246.9 506 36.4
Lj5A533G14 Lonicera japonica HOM05D004086 ORTHO05D004641 4.6e-63 246.1 445 38.0
Psat2g160960 Pisum sativum HOM05D004086 ORTHO05D004641 1.7e-62 244.2 492 35.8
Atru.chr3.545 Acer truncatum HOM05D004086 ORTHO05D004641 3.9e-62 243.0 474 36.5
arahy.Tifrunner.gnm1.ann1.4T6GLU Arachis hypogaea HOM05D004086 ORTHO05D004641 1.9e-61 240.7 490 34.5
Oeu053005.1 Olea europaea HOM05D004086 ORTHO05D004641 2.5e-61 240.4 479 35.7
DCAR_025930 Daucus carota HOM05D004086 ORTHO05D004641 5.6e-61 239.2 482 36.1
Lsat_1_v5_gn_4_150860 Lactuca sativa HOM05D004086 ORTHO05D004641 1.6e-60 237.7 468 37.6
Carub.0008s0941 Capsella rubella HOM05D004086 ORTHO05D004641 2.1e-60 237.3 418 37.1
Medtr5g019810 Medicago truncatula HOM05D004086 ORTHO05D004641 2.1e-60 237.3 483 35.2
Sopen08g027080 Solanum pennellii HOM05D004086 ORTHO05D004641 2.1e-60 237.3 467 35.8
Solyc08g078600.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 1.4e-59 234.6 467 35.3
PGSC0003DMG400004762 Solanum tuberosum HOM05D004086 ORTHO05D004641 1.8e-59 234.2 466 35.4
arahy.Tifrunner.gnm1.ann1.FS5W7P Arachis hypogaea HOM05D004086 ORTHO05D004641 3.1e-59 233.4 490 34.1
CAN.G1058.29 Capsicum annuum HOM05D004086 ORTHO05D004641 3.1e-59 233.4 462 36.6
CARHR287960 Cardamine hirsuta HOM05D004086 ORTHO05D004641 5.3e-59 232.6 488 33.8
Ah.15g091580 Amaranthus hybridus HOM05D004086 ORTHO05D004641 4.4e-58 229.6 474 34.8
Eucgr.H01260 Eucalyptus grandis HOM05D004086 ORTHO05D004641 4.4e-58 229.6 408 37.7
ECA232G4057 Erigeron canadensis HOM05D004086 ORTHO05D001499 2.2e-57 227.3 478 33.7
AT5G49530 Arabidopsis thaliana HOM05D004086 ORTHO05D004641 6.4e-57 225.7 491 33.6
Sp2g19840 Schrenkiella parvula HOM05D004086 ORTHO05D004641 1.9e-56 224.2 495 33.3
SpUn0021_0010 Schrenkiella parvula HOM05D004086 ORTHO05D004641 1.9e-56 224.2 495 33.3
EL10Ac7g17738 Beta vulgaris HOM05D004086 ORTHO05D004641 3.2e-56 223.4 460 34.1
Phvul.002G040400 Phaseolus vulgaris HOM05D004086 ORTHO05D004641 3.2e-56 223.4 500 34.6
CAN.G358.119 Capsicum annuum HOM05D004086 ORTHO05D004641 1.2e-55 221.5 484 33.9
MSTRG.23544 Avicennia marina HOM05D004086 ORTHO05D004641 2.7e-55 220.3 478 34.9
Cc07_g09240 Coffea canephora HOM05D004086 ORTHO05D004641 7.9e-55 218.8 476 31.9
Aa31LG11G8330 Aethionema arabicum HOM05D004086 ORTHO05D004641 3.9e-54 216.5 419 35.1
Hund05506 Selenicereus undatus HOM05D004086 ORTHO05D004641 3.9e-54 216.5 488 34.0
THA.LOC104819797 Tarenaya hassleriana HOM05D004086 ORTHO05D004641 8.7e-54 215.3 484 33.3
DCAR_023357 Daucus carota HOM05D004086 ORTHO05D004641 1.9e-53 214.2 471 34.2
A06p38290 Brassica napus HOM05D004086 ORTHO05D004641 2.5e-53 213.8 500 34.4
BraA06t26744Z Brassica rapa HOM05D004086 ORTHO05D004641 2.5e-53 213.8 500 34.4
AUR62025406 Chenopodium quinoa HOM05D004086 ORTHO05D004641 4.3e-53 213.0 451 35.0
Sopen02g030230 Solanum pennellii HOM05D004086 ORTHO05D004641 2.1e-52 210.7 471 33.3
Aqoxy6G01048 Aquilegia oxysepala HOM05D004086 ORTHO05D004641 3.6e-52 209.9 488 33.4
C07p39950 Brassica napus HOM05D004086 ORTHO05D004641 2.4e-51 207.2 495 33.1
Thhalv10003751m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 2.4e-51 207.2 497 32.8
Solyc02g085560.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 2.4e-51 207.2 468 32.9
BolC7t44527H Brassica oleracea HOM05D004086 ORTHO05D004641 9.0e-51 205.3 496 34.3
Thhalv10023969m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 1.5e-50 204.5 476 32.8
TPR.G18816 Trifolium pratense HOM05D004086 ORTHO05D004641 1.5e-50 204.5 485 34.0
Ah.15g091670 Amaranthus hybridus HOM05D004086 ORTHO05D004641 9.9e-50 201.8 375 36.8
Rhsim03G0093700 Rhododendron simsii HOM05D004086 ORTHO05D004641 7.1e-48 195.7 479 35.9
HanXRQChr09g0262111 Helianthus annuus HOM05D004086 ORTHO05D004641 1.8e-46 191.0 477 31.7
AUR62008836 Chenopodium quinoa HOM05D004086 ORTHO05D004641 2.3e-46 190.7 459 32.7
Migut.H00181 Erythranthe guttata HOM05D004086 ORTHO05D004641 5.1e-46 189.5 484 32.6
AL8G23320 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 6.7e-46 189.1 480 31.5
TPR.G28496 Trifolium pratense HOM05D004086 ORTHO05D004641 4.3e-45 186.4 463 31.7
PSO541G3560 Papaver somniferum HOM05D004086 ORTHO05D004641 7.4e-45 185.7 479 32.8
PSO675G7346 Papaver somniferum HOM05D004086 ORTHO05D004641 5.8e-42 176.0 474 32.1
AL5G27650 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 2.2e-41 174.1 447 30.6
ECA238G3830 Erigeron canadensis HOM05D004086 ORTHO05D004641 3.8e-41 173.3 462 32.9
BcaC03g17736 Brassica carinata HOM05D004086 ORTHO05D004641 4.3e-37 159.8 267 39.3
Nn5g29538 Nelumbo nucifera HOM05D004086 ORTHO05D004641 1.6e-36 157.9 319 34.8
HPP92_015988 Vanilla planifolia HOM05D004086 ORTHO05D004641 5.3e-35 152.9 455 30.3
Haze_02100 Corylus avellana HOM05D004086 ORTHO05D004641 1.2e-34 151.8 267 40.4
Nitab4.5_0001279g0090 Nicotiana tabacum HOM05D004086 ORTHO05D004641 1.2e-34 151.8 273 37.4
Nitab4.5_0004445g0020 Nicotiana tabacum HOM05D004086 ORTHO05D004641 1.2e-34 151.8 300 35.3
AagrBONN_evm.TU.Sc2ySwM_344.3508 Anthoceros agrestis HOM05D004086 ORTHO05D004641 1.0e-33 148.7 482 28.0
Haze_15127 Corylus avellana HOM05D004086 ORTHO05D004641 5.5e-32 142.9 279 38.0
unitig_52.g17585 Utricularia gibba HOM05D004086 ORTHO05D004641 2.7e-31 140.6 369 31.2
SMO203G0104 Selaginella moellendorffii HOM05D004086 ORTHO05D004641 7.9e-31 139.0 426 29.8
Mapoly0113s0019 Marchantia polymorpha HOM05D004086 ORTHO05D004641 3.9e-30 136.7 420 28.1
C02p57460 Brassica napus HOM05D004086 ORTHO05D004641 1.9e-29 134.4 261 36.4
ATR0064G058 Amborella trichopoda HOM05D004086 ORTHO05D004641 7.4e-29 132.5 521 28.0
Pp3c2_15450 Physcomitrium patens HOM05D004086 ORTHO05D004641 4.8e-28 129.8 483 28.2
A02p38220 Brassica napus HOM05D004086 ORTHO05D004641 1.4e-27 128.3 242 37.2
AL253U10010 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 4.5e-26 123.2 237 36.3
Lsat_1_v5_gn_4_150881 Lactuca sativa HOM05D004086 ORTHO05D004641 1.0e-25 122.1 393 26.2
Zm00001eb269010 Zea mays HOM05D004086 ORTHO05D004641 1.3e-25 121.7 205 38.0
HPP92_026151 Vanilla planifolia HOM05D004086 ORTHO05D004641 3.8e-25 120.2 353 31.4
CBR_g50911 Chara braunii HOM05D004086 ORTHO05D004641 4.2e-24 116.7 392 27.8
CBR_g50913 Chara braunii HOM05D004086 ORTHO05D004641 4.2e-24 116.7 392 27.8
CBR_g22032 Chara braunii HOM05D004086 ORTHO05D004641 4.6e-23 113.2 396 27.0
Haze_15116 Corylus avellana HOM05D004086 ORTHO05D004641 4.6e-23 113.2 236 36.4
CDE10G0302 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 2.3e-22 110.9 261 30.3
Haze_02099 Corylus avellana HOM05D004086 ORTHO05D004641 6.7e-22 109.4 456 26.3
CARHR050710 Cardamine hirsuta HOM05D004086 ORTHO05D004641 1.7e-20 104.8 203 33.5
Cpa.g.sc353.1 Carica papaya HOM05D004086 ORTHO05D004641 2.8e-20 104.0 232 38.4
Sc17g0002710 Simmondsia chinensis HOM05D004086 ORTHO05D004641 1.5e-18 98.2 142 40.1
CDE10G1264 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 3.4e-18 97.1 442 24.4
Cpa.g.sc353.3 Carica papaya HOM05D004086 ORTHO05D004641 3.8e-17 93.6 231 32.9
CDE05G2435 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 8.5e-17 92.4 201 32.3
Glyma.01G232951 Glycine max HOM05D001514 ORTHO05D002956 1.4e-16 91.7 188 36.7
BolC2t11821H Brassica oleracea HOM05D004086 ORTHO05D004641 1.9e-16 91.3 137 40.1
Gohir.A11G236200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 1.4e-14 85.1 77 57.1
CDE05G1436 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 5.1e-14 83.2 172 35.5
BcaB07g34160 Brassica carinata HOM05D004086 ORTHO05D004641 1.1e-13 82.0 134 38.8
QL06p009809 Quercus lobata HOM05D004086 ORTHO05D004641 7.4e-13 79.3 81 50.6
Ca_29955_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 2.2e-12 77.8 290 24.1
PGSC0003DMG400012686 Solanum tuberosum HOM05D004086 ORTHO05D004641 3.7e-12 77.0 181 30.4
PSO017G0414 Papaver somniferum HOM05D004086 ORTHO05D004641 8.2e-12 75.9 193 33.7
SHI06750 Sapria himalayana HOM05D004086 ORTHO05D004641 1.2e-10 72.0 109 38.5
SHI06749 Sapria himalayana HOM05D004086 ORTHO05D004641 1.6e-10 71.6 83 42.2
Ah.15g091620 Amaranthus hybridus HOM05D004086 ORTHO05D004641 3.5e-10 70.5 52 59.6
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 5.9e-10 69.7 131 35.1
MELO3C034917.2 Cucumis melo HOM05D004086 ORTHO05D004641 6.5e-09 66.2 51 58.8
SEGI_36884 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 2.1e-07 61.2 131 38.2
Cre10.g454650 Chlamydomonas reinhardtii HOM05D004086 ORTHO05D004641 6.1e-07 59.7 140 34.3


User provided reference genes

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