Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g10180 Fragaria vesca HOM05D004538 ORTHO05D006068 7.8e-180 633.6 313 100.0
FAN24G0261 Fragaria x ananassa HOM05D004538 ORTHO05D006068 1.2e-164 583.2 355 84.5
RcHm_v2.0_Chr6g0267391 Rosa chinensis HOM05D004538 ORTHO05D006068 5.6e-154 547.7 310 89.7
Prupe.8G086500 Prunus persica HOM05D004538 ORTHO05D006068 8.7e-147 523.9 313 84.7
MD02G1271400 Malus domestica HOM05D004538 ORTHO05D006068 5.6e-146 521.2 313 84.0
Prupe.4G230100 Prunus persica HOM05D004538 ORTHO05D006068 4.0e-144 515.0 313 83.4
RcHm_v2.0_Chr5g0075121 Rosa chinensis HOM05D004538 ORTHO05D006068 6.5e-142 507.7 312 81.4
FvH4_3g41910 Fragaria vesca HOM05D004538 ORTHO05D006068 7.1e-141 504.2 312 80.4
FAN21G0976 Fragaria x ananassa HOM05D004538 ORTHO05D006068 3.5e-140 501.9 312 79.8
FAN11G3993 Fragaria x ananassa HOM05D004538 ORTHO05D006068 2.3e-139 499.2 312 78.8
FAN25G0511 Fragaria x ananassa HOM05D004538 ORTHO05D006068 8.7e-139 497.3 311 79.1
CANSAT11G1513 Cannabis sativa HOM05D004538 ORTHO05D006068 1.7e-134 483.0 316 78.5
Haze_03267 Corylus avellana HOM05D004538 ORTHO05D006068 8.8e-131 470.7 270 85.2
Duzib268G1486 Durio zibethinus HOM05D004538 ORTHO05D006068 8.2e-129 464.2 315 74.3
Gorai.013G149100 Gossypium raimondii HOM05D004538 ORTHO05D006068 2.4e-128 462.6 313 74.8
GSVIVG01014777001 Vitis vinifera HOM05D004538 ORTHO05D006068 2.4e-128 462.6 317 74.1
Thecc.07G004000 Theobroma cacao HOM05D004538 ORTHO05D006068 3.1e-128 462.2 321 73.5
CiPaw.15G107100 Carya illinoinensis HOM05D004538 ORTHO05D006068 5.3e-128 461.5 263 85.6
Gohir.D13G132900 Gossypium hirsutum HOM05D004538 ORTHO05D006068 6.9e-128 461.1 313 74.4
Gohir.A13G129700 Gossypium hirsutum HOM05D004538 ORTHO05D006068 9.1e-128 460.7 313 74.8
Ciclev10008262m.g Citrus clementina HOM05D004538 ORTHO05D006068 1.2e-127 460.3 315 72.7
CsaV3_4G008160 Cucumis sativus L. HOM05D004538 ORTHO05D006068 2.9e-126 455.7 262 84.7
CSS0012792 Camellia sinensis var. sinensis HOM05D004538 ORTHO05D006068 5.0e-126 454.9 306 74.5
Sed0002758 Sechium edule HOM05D004538 ORTHO05D006068 5.0e-126 454.9 301 76.4
QL09p046970 Quercus lobata HOM05D004538 ORTHO05D006068 2.5e-125 452.6 319 72.7
Eucgr.F02006 Eucalyptus grandis HOM05D004538 ORTHO05D006068 3.2e-125 452.2 277 80.1
Lj8A182T63 Lonicera japonica HOM05D004538 ORTHO05D006068 3.2e-125 452.2 259 84.9
PGR083G1782 Punica granatum HOM05D004538 ORTHO05D006068 5.5e-125 451.4 263 82.9
Sp6g17940 Schrenkiella parvula HOM05D004538 ORTHO05D006068 5.5e-125 451.4 317 71.0
Hma1.2p1_0321F.1_g124200 Hydrangea macrophylla HOM05D004538 ORTHO05D006068 1.2e-124 450.3 300 74.7
ClCG07G010160 Citrullus lanatus HOM05D004538 ORTHO05D006068 4.7e-124 448.4 272 82.4
Dinv31347 Davidia involucrata HOM05D004538 ORTHO05D006068 6.1e-124 448.0 277 78.7
MELO3C016120.2 Cucumis melo HOM05D004538 ORTHO05D006068 7.9e-124 447.6 272 82.0
THA.LOC104811692 Tarenaya hassleriana HOM05D004538 ORTHO05D006068 7.9e-124 447.6 277 79.1
LjContig00081g0007081 Lotus japonicus HOM05D004538 ORTHO05D006068 2.3e-123 446.0 268 79.5
PSO675G3744 Papaver somniferum HOM05D004538 ORTHO05D006068 2.3e-123 446.0 324 70.1
Aqoxy7G01640 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 3.9e-123 445.3 261 82.4
Hund25422 Selenicereus undatus HOM05D004538 ORTHO05D006068 3.9e-123 445.3 317 71.6
PSO541G6331 Papaver somniferum HOM05D004538 ORTHO05D006068 6.7e-123 444.5 324 70.4
TPR.G1264 Trifolium pratense HOM05D004538 ORTHO05D006068 8.8e-123 444.1 321 69.8
Lj5g0024294 Lotus japonicus HOM05D004538 ORTHO05D006068 1.1e-122 443.7 268 79.5
Medtr5g096830 Medicago truncatula HOM05D004538 ORTHO05D006068 1.1e-122 443.7 272 80.1
Cc02_g29800 Coffea canephora HOM05D004538 ORTHO05D006068 1.5e-122 443.4 258 83.3
Glyma.14G010400 Glycine max HOM05D004538 ORTHO05D006068 1.5e-122 443.4 274 78.8
BraA10t43427Z Brassica rapa HOM05D004538 ORTHO05D006068 2.0e-122 443.0 313 69.3
AT5G56090 Arabidopsis thaliana HOM05D004538 ORTHO05D006068 2.6e-122 442.6 316 69.9
TWI39G0910 Tripterygium wilfordii HOM05D004538 ORTHO05D006068 3.3e-122 442.2 266 79.7
Cc02_g09720 Coffea canephora HOM05D004538 ORTHO05D006068 5.7e-122 441.4 265 80.8
Nn1g08442 Nelumbo nucifera HOM05D004538 ORTHO05D006068 5.7e-122 441.4 320 69.7
Nitab4.5_0001437g0060 Nicotiana tabacum HOM05D004538 ORTHO05D006068 5.7e-122 441.4 307 73.0
Sabra11G0139500 Salix brachista HOM05D004538 ORTHO05D006068 7.4e-122 441.0 323 70.6
AL2G22990 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 9.7e-122 440.7 316 69.3
AL2G24490 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 9.7e-122 440.7 316 69.3
BcaC04g20158 Brassica carinata HOM05D004538 ORTHO05D006068 9.7e-122 440.7 317 68.5
A10p13290 Brassica napus HOM05D002718 ORTHO05D003269 9.7e-122 440.7 313 69.0
TAR626G1654 Trochodendron aralioides HOM05D004538 ORTHO05D006068 9.7e-122 440.7 293 74.1
BolC9t57574H Brassica oleracea HOM05D004538 ORTHO05D006068 1.3e-121 440.3 317 68.5
Migut.F00884 Erythranthe guttata HOM05D004538 ORTHO05D006068 1.7e-121 439.9 258 81.4
Potri.011G166800 Populus trichocarpa HOM05D004538 ORTHO05D006068 1.7e-121 439.9 323 70.3
Actinidia00835 Actinidia chinensis HOM05D004538 ORTHO05D006068 2.8e-121 439.1 254 83.1
CARHR269470 Cardamine hirsuta HOM05D004538 ORTHO05D006068 3.7e-121 438.7 314 70.4
Sc07g0002240 Simmondsia chinensis HOM05D004538 ORTHO05D006068 3.7e-121 438.7 316 71.2
AUR62001067 Chenopodium quinoa HOM05D004538 ORTHO05D006068 4.8e-121 438.3 264 79.9
unitig_899.g14715 Utricularia gibba HOM05D004538 ORTHO05D006068 4.8e-121 438.3 256 82.4
Lalb_Chr04g0247681 Lupinus albus HOM05D004538 ORTHO05D006068 6.3e-121 438.0 317 71.3
Sopen11g002920 Solanum pennellii HOM05D004538 ORTHO05D006068 8.2e-121 437.6 258 82.2
Lsat_1_v5_gn_7_116401 Lactuca sativa HOM05D004538 ORTHO05D006068 1.1e-120 437.2 267 79.0
AL8G31670 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 1.4e-120 436.8 316 69.0
Psat2g005560 Pisum sativum HOM05D004538 ORTHO05D006068 1.4e-120 436.8 324 67.9
Solyc11g007000.2 Solanum lycopersicum HOM05D004538 ORTHO05D006068 1.4e-120 436.8 258 82.6
AUR62032611 Chenopodium quinoa HOM05D004538 ORTHO05D006068 1.8e-120 436.4 265 78.9
Peaxi162Scf00173g00324 Petunia axillaris HOM05D004538 ORTHO05D006068 1.8e-120 436.4 252 83.3
vmacro09607 Vaccinium macrocarpon HOM05D004538 ORTHO05D006068 1.8e-120 436.4 266 78.2
PSO063G5767 Papaver somniferum HOM05D004538 ORTHO05D006068 2.4e-120 436.0 324 69.1
HanXRQChr11g0334561 Helianthus annuus HOM05D004538 ORTHO05D006068 3.1e-120 435.6 300 71.7
Nitab4.5_0005622g0040 Nicotiana tabacum HOM05D004538 ORTHO05D006068 3.1e-120 435.6 258 81.8
arahy.Tifrunner.gnm1.ann1.0Z7D2W Arachis hypogaea HOM05D004538 ORTHO05D006068 4.1e-120 435.3 273 77.3
C09p47190 Brassica napus HOM05D002718 ORTHO05D003269 4.1e-120 435.3 308 69.5
COL.COLO4_07768 Corchorus olitorius HOM05D004538 ORTHO05D006068 4.1e-120 435.3 248 85.9
Ah.12g065010 Amaranthus hybridus HOM05D004538 ORTHO05D006068 5.3e-120 434.9 312 70.5
Carub.0008s1641 Capsella rubella HOM05D004538 ORTHO05D006068 5.3e-120 434.9 317 70.0
CAN.G645.5 Capsicum annuum HOM05D004538 ORTHO05D006068 5.3e-120 434.9 258 81.8
PGSC0003DMG400023975 Solanum tuberosum HOM05D004538 ORTHO05D006068 5.3e-120 434.9 258 82.2
BcaC04g20151 Brassica carinata HOM05D004538 ORTHO05D006068 7.0e-120 434.5 314 69.1
VMungo0647G1241 Vigna mungo HOM05D004538 ORTHO05D006068 7.0e-120 434.5 279 76.0
Phvul.008G282700 Phaseolus vulgaris HOM05D004538 ORTHO05D006068 1.2e-119 433.7 275 76.7
arahy.Tifrunner.gnm1.ann1.01YFCZ Arachis hypogaea HOM05D004538 ORTHO05D006068 2.0e-119 433.0 258 80.2
Ca_06424_v3 Cicer arietinum L. HOM05D000527 ORTHO05D000559 2.6e-119 432.6 250 82.4
BcaB08g35975 Brassica carinata HOM05D004538 ORTHO05D006068 3.4e-119 432.2 266 78.2
DCAR_013768 Daucus carota HOM05D004538 ORTHO05D006068 3.4e-119 432.2 269 78.4
Aa31LG3G12000 Aethionema arabicum HOM05D004538 ORTHO05D006068 5.9e-119 431.4 319 68.3
EL10Ac2g02751 Beta vulgaris HOM05D004538 ORTHO05D006068 5.9e-119 431.4 263 78.3
Glyma.02G303400 Glycine max HOM05D004538 ORTHO05D006068 7.7e-119 431.0 251 82.1
MD07G1040600 Malus domestica HOM05D004538 ORTHO05D006068 1.0e-118 430.6 320 71.6
HanXRQChr04g0114571 Helianthus annuus HOM05D004538 ORTHO05D006068 1.7e-118 429.9 320 68.1
SGA_v2.0_scaffold62G21339 Striga asiatica HOM05D004538 ORTHO05D006068 1.7e-118 429.9 258 79.8
Thhalv10013497m.g Eutrema salsugineum HOM05D004538 ORTHO05D006068 5.0e-118 428.3 261 79.3
Lj1C898T12 Lonicera japonica HOM05D004538 ORTHO05D006068 6.5e-118 427.9 247 83.0
Hund19415 Selenicereus undatus HOM05D004538 ORTHO05D006068 8.5e-118 427.6 323 67.8
SalBow6G4226 Salvia bowleyana HOM05D004538 ORTHO05D006068 1.9e-117 426.4 254 81.1
Cpa.g.sc97.88 Carica papaya HOM05D004538 ORTHO05D006068 5.5e-117 424.9 253 81.8
Oeu036424.1 Olea europaea HOM05D004538 ORTHO05D006068 5.5e-117 424.9 252 81.3
Medtr3g095790 Medicago truncatula HOM05D004538 ORTHO05D006068 1.6e-116 423.3 272 77.2
C09p47240 Brassica napus HOM05D004538 ORTHO05D006068 2.7e-116 422.5 248 81.5
BcaC04g20148 Brassica carinata HOM05D004538 ORTHO05D006068 4.7e-116 421.8 246 81.7
ECA236G0032 Erigeron canadensis HOM05D004538 ORTHO05D006068 1.4e-115 420.2 249 81.1
MBI14_g30901_MAGBIO Magnolia biondii HOM05D004538 ORTHO05D006068 1.1e-114 417.2 286 72.0
ATR0751G112 Amborella trichopoda HOM05D004538 ORTHO05D006068 1.2e-111 407.1 263 74.1
HPP92_015457 Vanilla planifolia HOM05D004538 ORTHO05D006068 1.6e-108 396.7 278 69.4
Os08g0496000 Oryza sativa ssp. japonica HOM05D004538 ORTHO05D006068 2.7e-108 396.0 273 71.4
Duzib213G1090 Durio zibethinus HOM05D004538 ORTHO05D006068 1.7e-102 376.7 313 63.6
CDE06G0653 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 1.9e-101 373.2 222 78.8
Nitab4.5_0004391g0070 Nicotiana tabacum HOM05D004538 ORTHO05D006068 1.6e-95 353.6 253 71.5
Mapoly0020s0071 Marchantia polymorpha HOM05D004538 ORTHO05D006068 2.3e-94 349.7 279 62.0
Atru.chr2.2684 Acer truncatum HOM05D004538 ORTHO05D006068 4.7e-92 342.0 209 80.9
Potri.001G469701 Populus trichocarpa HOM05D004538 ORTHO05D006068 1.0e-91 340.9 252 70.6
Pp3c7_5710 Physcomitrium patens HOM05D004538 ORTHO05D006068 7.5e-90 334.7 230 69.6
Zm00001eb033900 Zea mays HOM05D004538 ORTHO05D006068 2.8e-89 332.8 273 61.9
SalBow6G3380 Salvia bowleyana HOM05D004538 ORTHO05D006068 3.7e-89 332.4 263 63.1
Cc02_g29840 Coffea canephora HOM05D004538 ORTHO05D006068 6.3e-89 331.6 206 80.6
SMO353G0004 Selaginella moellendorffii HOM05D004538 ORTHO05D006068 4.1e-88 328.9 232 69.0
Manes.01G005033 Manihot esculenta HOM05D004538 ORTHO05D006068 4.5e-87 325.5 228 71.1
CBR_g24146 Chara braunii HOM05D004538 ORTHO05D006068 5.9e-87 325.1 245 65.7
CDE02G3208 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 2.3e-86 323.2 237 65.0
AUR62031724 Chenopodium quinoa HOM05D004538 ORTHO05D006068 3.8e-86 322.4 265 63.8
Aa31LG3G11950 Aethionema arabicum HOM05D004538 ORTHO05D006068 5.0e-86 322.0 212 76.9
AagrBONN_evm.TU.Sc2ySwM_368.2501 Anthoceros agrestis HOM05D004538 ORTHO05D006068 5.0e-86 322.0 289 57.8
BolC9t57580H Brassica oleracea HOM05D004538 ORTHO05D006068 1.9e-85 320.1 318 54.7
Cre02.g082700 Chlamydomonas reinhardtii HOM05D004538 ORTHO05D006068 3.0e-70 269.6 226 57.1
SEGI_29632 Sequoiadendron giganteum HOM05D004538 ORTHO05D006068 1.4e-67 260.8 175 73.7
CDE03G0061 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 9.9e-66 254.6 154 77.9
SHI46402 Sapria himalayana HOM05D004538 ORTHO05D006068 1.9e-64 250.4 233 56.2
AL8G31690 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 2.1e-63 246.9 139 86.3
PRCOL_00000259 Prasinoderma coloniale HOM05D004538 ORTHO05D006068 1.5e-61 240.7 206 56.8
SHI05855 Sapria himalayana HOM05D004538 ORTHO05D006068 1.2e-60 237.7 233 54.5
MSTRG.9067 Avicennia marina HOM05D004538 ORTHO05D006068 5.2e-59 232.3 124 86.3
Aqoxy289s001 Aquilegia oxysepala HOM05D004538 ORTHO05D008153 3.6e-44 183.0 143 68.5
Haze_27104 Corylus avellana HOM05D004538 ORTHO05D163757 5.3e-43 179.1 245 43.7
MSTRG.9065 Avicennia marina HOM05D004538 ORTHO05D006068 8.1e-36 155.2 101 71.3
Aqoxy2G00270 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 2.4e-35 153.7 85 84.7
A10p13310 Brassica napus HOM05D004538 ORTHO05D006068 1.2e-34 151.4 106 75.5
Haze_26959 Corylus avellana HOM05D004538 ORTHO05D165751 2.9e-33 146.7 194 44.8
Atru.chr2.2623 Acer truncatum HOM05D004538 ORTHO05D006068 1.9e-29 134.0 75 86.7
Cc02_g29790 Coffea canephora HOM05D004538 ORTHO05D006068 4.3e-29 132.9 89 76.4
QL10p039376 Quercus lobata HOM05D004538 ORTHO05D006068 4.2e-24 116.3 86 67.4
ATR0499G006 Amborella trichopoda HOM05D004538 ORTHO05D066479 7.1e-24 115.5 117 59.0
Atru.chr2.2679 Acer truncatum HOM05D004538 ORTHO05D052265 6.1e-23 112.5 231 35.1
QL03p014007 Quercus lobata HOM05D001565 ORTHO05D005515 8.2e-20 102.1 80 68.8
QL02p081848 Quercus lobata HOM05D007814 ORTHO05D009902 6.1e-15 85.9 50 78.0
Aqoxy2G00269 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 1.3e-12 78.2 44 88.6
Atru.chr2.2641 Acer truncatum HOM05D004538 ORTHO05D052874 6.9e-11 72.4 44 77.3
QL09p046950 Quercus lobata HOM05D004538 ORTHO05D337738 8.8e-06 55.5 31 83.9


User provided reference genes

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