Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g10050 Fragaria vesca HOM05D005703 ORTHO05D006643 3.1e-190 668.3 342 100.0
FAN15G0097 Fragaria x ananassa HOM05D005703 ORTHO05D006643 4.0e-177 624.8 393 85.2
RcHm_v2.0_Chr6g0266981 Rosa chinensis HOM05D005703 ORTHO05D006643 1.4e-169 599.7 344 91.0
FAN24G3327 Fragaria x ananassa HOM05D005703 ORTHO05D006643 4.1e-150 535.0 342 83.9
MD10G1066100 Malus domestica HOM05D005703 ORTHO05D006643 6.0e-149 531.2 343 79.6
FAN20G2472 Fragaria x ananassa HOM05D005703 ORTHO05D006643 3.3e-147 525.4 341 82.4
FAN27G2042 Fragaria x ananassa HOM05D005703 ORTHO05D006643 1.8e-145 519.6 341 81.8
Prupe.8G088000 Prunus persica HOM05D005703 ORTHO05D006643 4.4e-136 488.4 348 76.1
Potri.004G160800 Populus trichocarpa HOM05D005703 ORTHO05D006643 8.4e-135 484.2 292 83.2
QL11p045612 Quercus lobata HOM05D005703 ORTHO05D006643 6.0e-133 478.0 331 75.5
CiPaw.06G130900 Carya illinoinensis HOM05D005703 ORTHO05D006643 3.3e-131 472.2 332 74.4
Atru.chr5.3109 Acer truncatum HOM05D005703 ORTHO05D006643 4.3e-131 471.9 308 77.9
Cpa.g.sc150.43 Carica papaya HOM05D005703 ORTHO05D006643 3.6e-130 468.8 309 78.6
GSVIVG01024205001 Vitis vinifera HOM05D005703 ORTHO05D006643 4.7e-130 468.4 325 75.7
TWI31G0330 Tripterygium wilfordii HOM05D005703 ORTHO05D006643 1.4e-129 466.8 343 73.2
Actinidia02238 Actinidia chinensis HOM05D005703 ORTHO05D006643 3.1e-129 465.7 338 72.8
Hma1.2p1_0066F.1_g035910 Hydrangea macrophylla HOM05D005703 ORTHO05D006643 5.2e-129 464.9 283 81.3
Manes.11G087800 Manihot esculenta HOM05D005703 ORTHO05D006643 6.9e-129 464.5 305 77.0
Actinidia27862 Actinidia chinensis HOM05D005703 ORTHO05D006643 3.4e-128 462.2 336 72.3
Eucgr.D00178 Eucalyptus grandis HOM05D005703 ORTHO05D006643 8.4e-127 457.6 283 80.6
MELO3C002791.2 Cucumis melo HOM05D005703 ORTHO05D006643 5.4e-126 454.9 306 76.5
CsaV3_7G000370 Cucumis sativus L. HOM05D005703 ORTHO05D006643 5.4e-126 454.9 309 76.4
COL.COLO4_26014 Corchorus olitorius HOM05D005703 ORTHO05D006643 7.1e-126 454.5 332 71.4
Sabra04G0107600 Salix brachista HOM05D005703 ORTHO05D006643 9.3e-126 454.1 277 82.7
Aqoxy5G01507 Aquilegia oxysepala HOM05D005703 ORTHO05D006643 2.7e-125 452.6 311 75.6
CSS0001334 Camellia sinensis var. sinensis HOM05D005703 ORTHO05D006643 3.5e-125 452.2 278 83.1
Gorai.008G031500 Gossypium raimondii HOM05D005703 ORTHO05D006643 1.7e-124 449.9 313 72.2
Gohir.D12G030600 Gossypium hirsutum HOM05D005703 ORTHO05D006643 3.0e-124 449.1 313 72.5
Thecc.02G078100 Theobroma cacao HOM05D005703 ORTHO05D006643 5.1e-124 448.4 337 69.7
Nn6g32200 Nelumbo nucifera HOM05D005703 ORTHO05D006643 1.9e-123 446.4 309 74.1
Lj3g0017018 Lotus japonicus HOM05D005703 ORTHO05D006643 1.3e-122 443.7 285 76.5
Ciclev10028680m.g Citrus clementina HOM05D005703 ORTHO05D006643 1.6e-122 443.4 368 65.5
Ca_20918_v3 Cicer arietinum L. HOM05D005703 ORTHO05D006643 2.0e-120 436.4 285 75.4
Sopen01g052320 Solanum pennellii HOM05D005703 ORTHO05D006643 3.4e-120 435.6 288 75.7
Solyc01g110160.4 Solanum lycopersicum HOM05D005703 ORTHO05D006643 7.6e-120 434.5 288 75.3
VMungo1127G0812 Vigna mungo HOM05D005703 ORTHO05D006643 9.9e-120 434.1 310 71.3
Glyma.11G112900 Glycine max HOM05D005703 ORTHO05D006643 4.9e-119 431.8 282 75.5
PSO170G4951 Papaver somniferum HOM05D005703 ORTHO05D006643 4.9e-119 431.8 334 70.4
Peaxi162Scf00016g00231 Petunia axillaris HOM05D005703 ORTHO05D006643 4.9e-119 431.8 307 73.6
MSTRG.20056 Avicennia marina HOM05D005703 ORTHO05D006643 6.4e-119 431.4 291 73.9
ATR0661G148 Amborella trichopoda HOM05D005703 ORTHO05D006643 8.4e-119 431.0 287 76.0
Glyma.12G038800 Glycine max HOM05D005703 ORTHO05D006643 1.1e-118 430.6 287 74.6
Sc14g0002020 Simmondsia chinensis HOM05D005703 ORTHO05D006643 1.4e-118 430.3 338 67.8
Rhsim05G0069500 Rhododendron simsii HOM05D005703 ORTHO05D006643 2.4e-118 429.5 289 74.7
TPR.G16235 Trifolium pratense HOM05D005703 ORTHO05D006643 3.2e-118 429.1 282 74.5
HanXRQChr12g0373591 Helianthus annuus HOM05D005703 ORTHO05D006643 9.3e-118 427.6 291 73.2
Lalb_Chr03g0025421 Lupinus albus HOM05D005703 ORTHO05D006643 1.6e-117 426.8 292 74.0
THA.LOC104824803 Tarenaya hassleriana HOM05D005703 ORTHO05D006643 1.6e-117 426.8 322 68.9
PGSC0003DMG400030971 Solanum tuberosum HOM05D005703 ORTHO05D006643 4.6e-117 425.2 298 72.8
AL4G10560 Arabidopsis lyrata HOM05D005703 ORTHO05D006643 6.0e-117 424.9 320 66.6
CARHR112270 Cardamine hirsuta HOM05D005703 ORTHO05D006643 7.9e-117 424.5 316 67.4
ECA234G1754 Erigeron canadensis HOM05D005703 ORTHO05D006643 7.9e-117 424.5 281 75.8
AT2G21385 Arabidopsis thaliana HOM05D005703 ORTHO05D006643 1.0e-116 424.1 297 69.7
Carub.0004s0043 Capsella rubella HOM05D005703 ORTHO05D006643 3.9e-116 422.2 297 70.0
Aa31LG7G15130 Aethionema arabicum HOM05D005703 ORTHO05D001153 6.7e-116 421.4 293 72.7
Medtr4g071190 Medicago truncatula HOM05D005703 ORTHO05D006643 1.1e-115 420.6 281 73.7
arahy.Tifrunner.gnm1.ann1.YBLQ63 Arachis hypogaea HOM05D005703 ORTHO05D006643 3.3e-115 419.1 283 73.9
Sp4g00560 Schrenkiella parvula HOM05D005703 ORTHO05D006643 5.6e-115 418.3 315 67.9
Migut.B00193 Erythranthe guttata HOM05D005703 ORTHO05D006643 2.1e-114 416.4 275 75.6
Lsat_1_v5_gn_5_125081 Lactuca sativa HOM05D005703 ORTHO05D006643 2.4e-113 412.9 316 69.9
AUR62010417 Chenopodium quinoa HOM05D005703 ORTHO05D006643 1.2e-112 410.6 304 72.7
AUR62016798 Chenopodium quinoa HOM05D005703 ORTHO05D006643 2.6e-112 409.5 319 69.6
Psat7g139960 Pisum sativum HOM05D005703 ORTHO05D006643 6.4e-111 404.8 282 72.3
Dinv23475 Davidia involucrata HOM05D005703 ORTHO05D006643 1.4e-110 403.7 277 75.5
Os09g0531100 Oryza sativa ssp. japonica HOM05D005703 ORTHO05D006643 1.4e-110 403.7 280 71.1
HPP92_025877 Vanilla planifolia HOM05D005703 ORTHO05D006643 1.4e-110 403.7 304 68.8
C08p41580 Brassica napus HOM05D005703 ORTHO05D006643 4.2e-110 402.1 300 68.7
BraA09t41216Z Brassica rapa HOM05D005703 ORTHO05D006643 5.5e-110 401.7 300 68.7
A09p58290 Brassica napus HOM05D005703 ORTHO05D006643 7.1e-110 401.4 299 68.6
BolC8t51720H Brassica oleracea HOM05D005703 ORTHO05D006643 9.3e-110 401.0 301 68.4
Zm00001eb353590 Zea mays HOM05D005703 ORTHO05D006643 1.6e-109 400.2 338 61.8
Phvul.011G040900 Phaseolus vulgaris HOM05D005703 ORTHO05D006643 2.3e-108 396.4 259 75.3
Haze_02308 Corylus avellana HOM05D005703 ORTHO05D006643 4.3e-107 392.1 306 69.0
CDE09G1081 Ceratophyllum demersum HOM05D005703 ORTHO05D006643 1.3e-106 390.6 325 65.2
Nitab4.5_0011132g0020 Nicotiana tabacum HOM05D005703 ORTHO05D006643 1.4e-105 387.1 296 69.6
Hma1.2p1_0066F.1_g035920 Hydrangea macrophylla HOM05D005703 ORTHO05D006643 1.3e-103 380.6 277 70.4
SGA_v2.0_scaffold58G20483 Striga asiatica HOM05D005703 ORTHO05D006643 8.4e-103 377.9 309 66.7
arahy.Tifrunner.gnm1.ann1.R55P3J Arachis hypogaea HOM05D005703 ORTHO05D006643 1.2e-101 374.0 256 73.8
CANSAT11G2682 Cannabis sativa HOM05D005703 ORTHO05D006643 3.9e-100 369.0 339 62.5
SalBow6G5125 Salvia bowleyana HOM05D005703 ORTHO05D006643 5.1e-100 368.6 312 63.5
Thhalv10000241m.g Eutrema salsugineum HOM05D005703 ORTHO05D006643 1.5e-99 367.1 251 72.5
ClCG02G004580 Citrullus lanatus HOM05D005703 ORTHO05D006643 1.9e-99 366.7 311 66.2
MELO3C013421.2 Cucumis melo HOM05D005703 ORTHO05D006643 5.7e-99 365.2 299 68.2
vmacro17444 Vaccinium macrocarpon HOM05D005703 ORTHO05D006643 3.2e-94 349.4 336 57.7
EL10Ac9g21670 Beta vulgaris HOM05D005703 ORTHO05D006643 9.3e-94 347.8 299 63.5
DCAR_022931 Daucus carota HOM05D005703 ORTHO05D006643 2.5e-91 339.7 279 64.2
Sed0007704 Sechium edule HOM05D005703 ORTHO05D006643 1.7e-90 337.0 254 70.9
Nitab4.5_0002723g0090 Nicotiana tabacum HOM05D005703 ORTHO05D006643 8.2e-90 334.7 275 66.2
Cfa005074 Carpinus fangiana HOM05D005703 ORTHO05D006643 4.1e-89 332.4 244 73.4
Lj5C191G8 Lonicera japonica HOM05D005703 ORTHO05D006643 3.8e-87 325.9 308 61.0
Hund00227 Selenicereus undatus HOM05D005703 ORTHO05D006643 7.2e-86 321.6 282 62.8
Pp3c22_4620 Physcomitrium patens HOM05D005703 ORTHO05D006643 3.1e-81 306.2 347 49.9
Cc02_g17090 Coffea canephora HOM05D005703 ORTHO05D006643 3.4e-80 302.8 197 76.6
Mapoly0084s0041 Marchantia polymorpha HOM05D005703 ORTHO05D006643 1.0e-79 301.2 264 58.3
SMO356G0671 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 9.7e-75 284.6 268 55.2
unitig_0.g54 Utricularia gibba HOM05D005703 ORTHO05D006643 4.8e-74 282.3 198 70.2
SMO290G0004 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 5.3e-73 278.9 275 53.8
SMO290G0013 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 2.0e-72 276.9 270 54.4
SMO356G0278 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 4.0e-68 262.7 270 53.0
BcaB06g27102 Brassica carinata HOM05D005703 ORTHO05D006643 2.8e-66 256.5 260 54.6
Gohir.A12G041600 Gossypium hirsutum HOM05D005703 ORTHO05D006643 6.3e-66 255.4 165 78.2
Duzib132G0736 Durio zibethinus HOM05D005703 ORTHO05D006643 2.2e-63 246.9 378 42.6
BraA01t01909Z Brassica rapa HOM05D005703 ORTHO05D006643 5.2e-60 235.7 207 60.9
Thhalv10005656m.g Eutrema salsugineum HOM05D005703 ORTHO05D006643 4.4e-59 232.6 176 67.0
AagrBONN_evm.TU.Sc2ySwM_228.378 Anthoceros agrestis HOM05D005703 ORTHO05D006643 3.1e-57 226.5 197 60.4
TAR381G0871 Trochodendron aralioides HOM05D005703 ORTHO05D006643 2.8e-45 186.8 133 69.2
MBI01_g29867_MAGBIO Magnolia biondii HOM05D005703 ORTHO05D006643 1.3e-42 177.9 114 79.8
BolC1t00937H Brassica oleracea HOM05D005703 ORTHO05D006643 4.1e-41 172.9 144 63.2
C01p09750 Brassica napus HOM05D005703 ORTHO05D006643 2.1e-37 160.6 186 51.1
BolC4t23697H Brassica oleracea HOM05D005703 ORTHO05D006643 4.9e-34 149.4 188 46.8
BolC2t11489H Brassica oleracea HOM05D005703 ORTHO05D006643 1.9e-33 147.5 185 47.6
CBR_g49480 Chara braunii HOM05D005703 ORTHO05D006643 9.2e-33 145.2 241 36.1
BcaC04g19425 Brassica carinata HOM05D005703 ORTHO05D006643 2.3e-31 140.6 225 42.7
C04p21760 Brassica napus HOM05D005703 ORTHO05D006643 3.9e-31 139.8 212 42.5
C09p55850 Brassica napus HOM05D005703 ORTHO05D006643 5.1e-31 139.4 214 43.0
Potri.009G121902 Populus trichocarpa HOM05D005703 ORTHO05D006643 1.1e-28 131.7 104 65.4
Cre08.g372000 Chlamydomonas reinhardtii HOM05D005703 ORTHO05D006643 1.3e-26 124.8 275 31.6
HanXRQChr14g0433731 Helianthus annuus HOM05D005703 ORTHO05D006643 1.7e-26 124.4 79 81.0
QL11p045593 Quercus lobata HOM05D005703 ORTHO05D006643 6.4e-26 122.5 72 77.8
C02p54250 Brassica napus HOM05D005703 ORTHO05D006643 1.4e-25 121.3 211 40.3
BcaC01g06448 Brassica carinata HOM05D005703 ORTHO05D006643 4.1e-25 119.8 137 52.6
PRCOL_00000952 Prasinoderma coloniale HOM05D005703 ORTHO05D006643 6.0e-24 115.9 232 32.3
QL11p045598 Quercus lobata HOM05D005703 ORTHO05D006643 6.0e-24 115.9 77 79.2
Cc02_g17080 Coffea canephora HOM05D005703 ORTHO05D006643 1.7e-23 114.4 80 70.0
unitig_0.g53 Utricularia gibba HOM05D005703 ORTHO05D006643 4.7e-21 106.3 72 72.2
SEGI_33335 Sequoiadendron giganteum HOM05D005703 ORTHO05D006643 3.1e-20 103.6 87 60.9
MBI01_g29866_MAGBIO Magnolia biondii HOM05D005703 ORTHO05D006643 4.4e-19 99.8 60 78.3
C03p15450 Brassica napus HOM05D005703 ORTHO05D006643 4.6e-16 89.7 189 35.4
BcaC09g52221 Brassica carinata HOM05D005703 ORTHO05D006643 1.9e-14 84.3 64 67.2
C03p56750 Brassica napus HOM05D005703 ORTHO05D006643 2.8e-13 80.5 128 38.3
BolC1t00936H Brassica oleracea HOM05D005703 ORTHO05D006643 1.8e-12 77.8 64 62.5
C03p56740 Brassica napus HOM05D005703 ORTHO05D006643 4.0e-12 76.6 81 51.9
TAR381G1022 Trochodendron aralioides HOM05D005703 ORTHO05D006643 2.2e-10 70.9 87 47.1
Lsat_1_v5_gn_1_61800 Lactuca sativa HOM05D005428 ORTHO05D002547 4.9e-10 69.7 57 64.9
Oeu037764.1 Olea europaea HOM05D005703 ORTHO05D006643 1.2e-08 65.1 34 88.2
CAN.G878.5 Capsicum annuum HOM05D000269 ORTHO05D000216 1.6e-08 64.7 39 74.4
AUR62033094 Chenopodium quinoa HOM05D005703 ORTHO05D006643 3.5e-08 63.5 152 35.5


User provided reference genes

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