Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g10040 Fragaria vesca HOM05D007387 ORTHO05D009321 3.6e-97 358.2 180 100.0
FAN24G0663 Fragaria x ananassa HOM05D007387 ORTHO05D009321 1.4e-96 356.3 180 99.4
FAN27G1365 Fragaria x ananassa HOM05D007387 ORTHO05D009321 3.5e-92 341.7 181 96.7
FAN15G3112 Fragaria x ananassa HOM05D007387 ORTHO05D009321 4.0e-88 328.2 181 94.5
FAN15G0178 Fragaria x ananassa HOM05D007387 ORTHO05D009321 1.9e-61 239.6 169 78.7
FAN20G0098 Fragaria x ananassa HOM05D007387 ORTHO05D009321 3.0e-59 232.3 167 76.6
RcHm_v2.0_Chr6g0266971 Rosa chinensis HOM05D007387 ORTHO05D009321 6.7e-51 204.5 183 64.5
FAN21G3109 Fragaria x ananassa HOM05D007387 ORTHO05D001690 2.0e-42 176.4 130 74.6
FAN25G2925 Fragaria x ananassa HOM05D007387 ORTHO05D009321 8.2e-41 171.0 125 75.2
FvH4_4g16763 Fragaria vesca HOM05D007387 ORTHO05D009321 1.8e-32 143.3 123 65.0
MD10G1066200 Malus domestica HOM05D007387 ORTHO05D009321 7.0e-32 141.4 182 50.0
Prupe.8G088200 Prunus persica HOM05D007387 ORTHO05D009321 1.2e-28 130.6 186 47.3
FAN21G1657 Fragaria x ananassa HOM05D007387 ORTHO05D009321 1.4e-27 127.1 75 84.0
MD05G1058600 Malus domestica HOM05D007387 ORTHO05D009321 2.2e-25 119.8 186 46.2
Glyma.12G039000 Glycine max HOM05D007387 ORTHO05D009321 7.0e-24 114.8 60 85.0
VMungo1127G0459 Vigna mungo HOM05D007387 ORTHO05D009321 7.0e-24 114.8 60 83.3
Phvul.011G041100 Phaseolus vulgaris HOM05D007387 ORTHO05D009321 2.3e-22 109.8 174 44.8
Duzib132G0100 Durio zibethinus HOM05D007387 ORTHO05D009321 1.5e-21 107.1 193 44.0
Ca_20916_v3 Cicer arietinum L. HOM05D007387 ORTHO05D009321 3.3e-21 105.9 84 63.1
arahy.Tifrunner.gnm1.ann1.WH0Y0U Arachis hypogaea HOM05D007387 ORTHO05D009321 5.6e-21 105.1 62 75.8
Manes.11G087600 Manihot esculenta HOM05D007387 ORTHO05D009321 7.3e-21 104.8 58 81.0
MELO3C013435.2 Cucumis melo HOM05D007387 ORTHO05D009321 1.2e-20 104.0 178 42.1
QL11p045571 Quercus lobata HOM05D007387 ORTHO05D009321 2.8e-20 102.8 62 77.4
Glyma.11G113100 Glycine max HOM05D007387 ORTHO05D009321 3.6e-20 102.4 192 39.6
Gorai.012G154600 Gossypium raimondii HOM05D007387 ORTHO05D009321 3.6e-20 102.4 92 58.7
Sabra04G0107500 Salix brachista HOM05D007387 ORTHO05D009321 3.6e-20 102.4 179 44.7
Sed0010335 Sechium edule HOM05D007387 ORTHO05D009321 6.1e-20 101.7 180 40.0
CsaV3_7G000220 Cucumis sativus L. HOM05D007387 ORTHO05D009321 8.0e-20 101.3 177 41.2
Cfa005072 Carpinus fangiana HOM05D007387 ORTHO05D009321 1.0e-19 100.9 61 77.0
ClCG02G004690 Citrullus lanatus HOM05D007387 ORTHO05D009321 1.0e-19 100.9 184 41.3
Atru.chr5.3107 Acer truncatum HOM05D007387 ORTHO05D009321 1.4e-19 100.5 60 78.3
Potri.004G160700 Populus trichocarpa HOM05D007387 ORTHO05D009321 1.4e-19 100.5 58 77.6
Psat7g182600 Pisum sativum HOM05D007387 ORTHO05D009321 1.8e-19 100.1 59 74.6
Thecc.02G078400 Theobroma cacao HOM05D007387 ORTHO05D009321 1.8e-19 100.1 179 43.0
Gohir.A04G124100 Gossypium hirsutum HOM05D007387 ORTHO05D009321 2.3e-19 99.8 75 68.0
TWI31G1242 Tripterygium wilfordii HOM05D007387 ORTHO05D009321 2.3e-19 99.8 180 40.6
TWI79G0383 Tripterygium wilfordii HOM05D007387 ORTHO05D009321 2.3e-19 99.8 173 40.5
Medtr4g071120 Medicago truncatula HOM05D007387 ORTHO05D009321 3.0e-19 99.4 59 74.6
Gohir.D04G166200 Gossypium hirsutum HOM05D007387 ORTHO05D009321 4.0e-19 99.0 75 68.0
Lalb_Chr03g0025431 Lupinus albus HOM05D007387 ORTHO05D009321 1.2e-18 97.4 59 78.0
Aa31LG2G15890 Aethionema arabicum HOM05D007387 ORTHO05D009321 2.0e-18 96.7 83 61.4
CANSAT11G0211 Cannabis sativa HOM05D007387 ORTHO05D009321 2.0e-18 96.7 186 40.3
FAN20G1788 Fragaria x ananassa HOM05D000371 ORTHO05D004413 3.4e-18 95.9 57 89.5
Sed0000236 Sechium edule HOM05D007387 ORTHO05D009321 3.4e-18 95.9 180 42.2
Potri.009G121700 Populus trichocarpa HOM05D007387 ORTHO05D009321 1.3e-17 94.0 175 42.3
Dinv42018 Davidia involucrata HOM05D007387 ORTHO05D009321 2.2e-17 93.2 60 71.7
Gohir.D12G030300 Gossypium hirsutum HOM05D007387 ORTHO05D009321 2.9e-17 92.8 73 64.4
Actinidia00563 Actinidia chinensis HOM05D001785 ORTHO05D001933 4.9e-17 92.0 71 66.2
Duzib248G1112 Durio zibethinus HOM05D007387 ORTHO05D009321 6.4e-17 91.7 194 40.7
FAN15G2274 Fragaria x ananassa HOM05D007387 ORTHO05D009321 1.1e-16 90.9 86 61.6
Gohir.A12G041900 Gossypium hirsutum HOM05D007387 ORTHO05D009321 1.1e-16 90.9 73 63.0
Sabra09G0094000 Salix brachista HOM05D007387 ORTHO05D009321 1.1e-16 90.9 173 40.5
Sp7g32420 Schrenkiella parvula HOM05D007387 ORTHO05D009321 1.1e-16 90.9 83 59.0
Actinidia11742 Actinidia chinensis HOM05D007387 ORTHO05D009321 1.4e-16 90.5 56 75.0
Oeu008575.1 Olea europaea HOM05D007387 ORTHO05D009321 1.4e-16 90.5 67 56.7
TPR.G30501 Trifolium pratense HOM05D000711 ORTHO05D000545 1.4e-16 90.5 65 64.6
Cpa.g.sc139.28 Carica papaya HOM05D007387 ORTHO05D009321 3.2e-16 89.4 186 40.9
vmacro02067 Vaccinium macrocarpon HOM05D007387 ORTHO05D009321 4.1e-16 89.0 58 69.0
Lalb_Chr19g0138881 Lupinus albus HOM05D007387 ORTHO05D009321 5.4e-16 88.6 193 37.3
Sc18g0005240 Simmondsia chinensis HOM05D007387 ORTHO05D009321 5.4e-16 88.6 62 62.9
CiPaw.06G131100 Carya illinoinensis HOM05D007387 ORTHO05D009321 9.2e-16 87.8 187 36.9
Lj3g0012874 Lotus japonicus HOM05D007387 ORTHO05D009321 5.9e-15 85.1 179 37.4
ECA236G2541 Erigeron canadensis HOM05D007387 ORTHO05D009321 3.0e-14 82.8 71 59.2
Nitab4.5_0002723g0090 Nicotiana tabacum HOM05D005703 ORTHO05D006643 3.0e-14 82.8 185 36.8
Nitab4.5_0011132g0020 Nicotiana tabacum HOM05D005703 ORTHO05D006643 5.0e-14 82.0 202 36.1
PGSC0003DMG400030970 Solanum tuberosum HOM05D007387 ORTHO05D009321 1.5e-13 80.5 169 36.1
Thhalv10026183m.g Eutrema salsugineum HOM05D007387 ORTHO05D009321 1.9e-13 80.1 83 54.2
Eucgr.I01309 Eucalyptus grandis HOM05D007387 ORTHO05D009321 2.5e-13 79.7 203 35.0
PGR142G2532 Punica granatum HOM05D007387 ORTHO05D009321 2.5e-13 79.7 191 36.1
AL7G16570 Arabidopsis lyrata HOM05D007387 ORTHO05D009321 4.3e-13 79.0 73 60.3
Cc02_g17100 Coffea canephora HOM05D007387 ORTHO05D009321 4.3e-13 79.0 175 35.4
DCAR_009554 Daucus carota HOM05D007387 ORTHO05D009321 5.6e-13 78.6 56 67.9
THA.LOC104807296 Tarenaya hassleriana HOM05D007387 ORTHO05D009321 5.6e-13 78.6 193 36.3
DCAR_003650 Daucus carota HOM05D007387 ORTHO05D009321 7.3e-13 78.2 56 66.1
BcaNung04919 Brassica carinata HOM05D007387 ORTHO05D009321 9.5e-13 77.8 199 39.2
Solyc01g110150.2 Solanum lycopersicum HOM05D007387 ORTHO05D009321 9.5e-13 77.8 57 59.6
CAN.G170.83 Capsicum annuum HOM05D007387 ORTHO05D009321 1.2e-12 77.4 167 36.5
BcaNung00681 Brassica carinata HOM05D007387 ORTHO05D009321 2.1e-12 76.6 199 40.7
C01p04170 Brassica napus HOM05D007387 ORTHO05D009321 2.1e-12 76.6 199 40.7
BolC1t00405H Brassica oleracea HOM05D007387 ORTHO05D009321 2.1e-12 76.6 199 40.7
A01p03860 Brassica napus HOM05D007387 ORTHO05D009321 2.8e-12 76.3 211 36.5
CARHR106690 Cardamine hirsuta HOM05D007387 ORTHO05D009321 2.8e-12 76.3 69 58.0
BcaNung04916 Brassica carinata HOM05D007387 ORTHO05D009321 3.6e-12 75.9 199 38.7
BraA01t00373Z Brassica rapa HOM05D007387 ORTHO05D009321 3.6e-12 75.9 198 39.4
HanXRQChr16g0505141 Helianthus annuus HOM05D007387 ORTHO05D009321 3.6e-12 75.9 181 36.5
Sopen01g052310 Solanum pennellii HOM05D007387 ORTHO05D009321 3.6e-12 75.9 55 60.0
TWI75G1034 Tripterygium wilfordii HOM05D007387 ORTHO05D009321 8.0e-12 74.7 73 54.8
Ah.01g018920 Amaranthus hybridus HOM05D001785 ORTHO05D001933 1.4e-11 73.9 64 50.0
Peaxi162Scf00003g00073 Petunia axillaris HOM05D007387 ORTHO05D009321 1.8e-11 73.6 71 50.7
EL10Ac9g21673 Beta vulgaris HOM05D007387 ORTHO05D009321 2.3e-11 73.2 76 53.9
CARHR242940 Cardamine hirsuta HOM05D007387 ORTHO05D009321 3.1e-11 72.8 72 59.7
Carub.0007s0565 Capsella rubella HOM05D007387 ORTHO05D009321 4.0e-11 72.4 210 35.7
Lsat_1_v5_gn_7_91901 Lactuca sativa HOM05D007387 ORTHO05D009321 4.0e-11 72.4 199 35.2
Hma1.2p1_0066F.1_g035940 Hydrangea macrophylla HOM05D007387 ORTHO05D009321 1.2e-10 70.9 57 61.4
Haze_02310 Corylus avellana HOM05D007387 ORTHO05D009321 2.0e-10 70.1 42 78.6
arahy.Tifrunner.gnm1.ann1.TWZZ0X Arachis hypogaea HOM05D007387 ORTHO05D009321 3.4e-10 69.3 168 33.3
HanXRQChr04g0127721 Helianthus annuus HOM05D007387 ORTHO05D009321 3.4e-10 69.3 206 33.5
Oeu055620.1 Olea europaea HOM05D007387 ORTHO05D009321 4.4e-10 68.9 173 31.8
Ciclev10029309m.g Citrus clementina HOM05D007387 ORTHO05D009321 7.5e-10 68.2 181 35.9
Actinidia12738 Actinidia chinensis HOM05D007387 ORTHO05D009321 1.7e-09 67.0 71 54.9
Actinidia27864 Actinidia chinensis HOM05D007387 ORTHO05D009321 1.7e-09 67.0 71 54.9
AT4G34630 Arabidopsis thaliana HOM05D007387 ORTHO05D009321 2.9e-09 66.2 50 68.0
AL3G52630 Arabidopsis lyrata HOM05D007387 ORTHO05D009321 1.4e-08 63.9 64 54.7
Carub.0003s3021 Capsella rubella HOM05D007387 ORTHO05D009321 5.4e-08 62.0 116 41.4
Migut.B00194 Erythranthe guttata HOM05D007387 ORTHO05D009321 7.8e-07 58.2 64 45.3
Peaxi162Scf00016g00025 Petunia axillaris HOM05D007387 ORTHO05D009321 1.7e-06 57.0 52 59.6


User provided reference genes

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