Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g09803 Fragaria vesca HOM05D001741 ORTHO05D035399 4.6e-143 511.1 246 100.0
FvH4_4g31760 Fragaria vesca HOM05D001741 ORTHO05D002196 1.3e-25 120.9 82 70.7
FAN12G1673 Fragaria x ananassa HOM05D001741 ORTHO05D002196 1.3e-25 120.9 82 70.7
FAN17G1528 Fragaria x ananassa HOM05D001741 ORTHO05D002196 1.3e-25 120.9 82 70.7
RcHm_v2.0_Chr4g0440361 Rosa chinensis HOM05D001741 ORTHO05D002196 2.3e-25 120.2 82 73.2
FAN22G2407 Fragaria x ananassa HOM05D001741 ORTHO05D002196 6.6e-25 118.6 82 69.5
Gohir.A13G071600 Gossypium hirsutum HOM05D001741 ORTHO05D002196 9.6e-24 114.8 82 64.6
Gorai.013G082400 Gossypium raimondii HOM05D001741 ORTHO05D002196 9.6e-24 114.8 82 64.6
Duzib251G0381 Durio zibethinus HOM05D001741 ORTHO05D002196 2.8e-23 113.2 82 63.4
Atru.chr11.1894 Acer truncatum HOM05D001741 ORTHO05D002196 4.0e-22 109.4 84 63.1
Nitab4.5_0000141g0350 Nicotiana tabacum HOM05D001741 ORTHO05D002196 4.0e-22 109.4 82 64.6
MELO3C012073.2 Cucumis melo HOM05D001741 ORTHO05D002196 5.3e-22 109.0 82 62.2
MD13G1077700 Malus domestica HOM05D001741 ORTHO05D002196 5.3e-22 109.0 82 65.9
Thecc.02G353700 Theobroma cacao HOM05D001741 ORTHO05D002196 5.3e-22 109.0 82 59.8
Solyc01g010700.3 Solanum lycopersicum HOM05D001741 ORTHO05D002196 6.9e-22 108.6 82 63.4
CsaV3_5G032420 Cucumis sativus L. HOM05D001741 ORTHO05D002196 9.0e-22 108.2 82 62.2
Peaxi162Scf00026g02513 Petunia axillaris HOM05D001741 ORTHO05D002196 1.2e-21 107.8 82 62.2
Sopen01g006320 Solanum pennellii HOM05D001741 ORTHO05D002196 1.2e-21 107.8 82 63.4
PGSC0003DMG400000861 Solanum tuberosum HOM05D001741 ORTHO05D002196 1.2e-21 107.8 82 63.4
CAN.G38.23 Capsicum annuum HOM05D001741 ORTHO05D002196 2.0e-21 107.1 82 62.2
Potri.017G053600 Populus trichocarpa HOM05D001741 ORTHO05D002196 2.6e-21 106.7 82 63.4
Ciclev10033729m.g Citrus clementina HOM05D001741 ORTHO05D002196 3.4e-21 106.3 82 61.0
Cc11_g13370 Coffea canephora HOM05D001741 ORTHO05D002196 3.4e-21 106.3 82 62.2
Sed0010202 Sechium edule HOM05D001741 ORTHO05D002196 4.5e-21 105.9 82 61.0
Duzib248G0957 Durio zibethinus HOM05D001741 ORTHO05D002196 7.6e-21 105.1 82 57.3
Nitab4.5_0000879g0060 Nicotiana tabacum HOM05D001741 ORTHO05D002196 7.6e-21 105.1 103 52.4
Sabra17G0045600 Salix brachista HOM05D001741 ORTHO05D002196 7.6e-21 105.1 82 61.0
Glyma.01G043400 Glycine max HOM05D001741 ORTHO05D002196 9.9e-21 104.8 82 59.8
Glyma.02G020200 Glycine max HOM05D001741 ORTHO05D002196 9.9e-21 104.8 82 61.0
EL10Ac6g13161 Beta vulgaris HOM05D001741 ORTHO05D002196 1.3e-20 104.4 82 59.8
COL.COLO4_23038 Corchorus olitorius HOM05D001741 ORTHO05D002196 1.3e-20 104.4 82 56.1
Nitab4.5_0002752g0140 Nicotiana tabacum HOM05D001741 ORTHO05D002196 1.3e-20 104.4 82 61.0
PSO832G3125 Papaver somniferum HOM05D001741 ORTHO05D002196 1.3e-20 104.4 82 59.8
TPR.G13768 Trifolium pratense HOM05D001741 ORTHO05D002196 1.3e-20 104.4 82 61.0
ClCG05G024530 Citrullus lanatus HOM05D001741 ORTHO05D002196 6.4e-20 102.1 82 62.2
Lj3A1041T82 Lonicera japonica HOM05D001741 ORTHO05D002196 6.4e-20 102.1 82 59.8
Sc04g0008400 Simmondsia chinensis HOM05D001741 ORTHO05D002196 6.4e-20 102.1 124 46.0
Medtr5g038570 Medicago truncatula HOM05D001741 ORTHO05D002196 8.4e-20 101.7 82 58.5
Nn3g17147 Nelumbo nucifera HOM05D001741 ORTHO05D002196 8.4e-20 101.7 82 58.5
GSVIVG01020059001 Vitis vinifera HOM05D001741 ORTHO05D002196 1.1e-19 101.3 82 58.5
CSS0014423 Camellia sinensis var. sinensis HOM05D001741 ORTHO05D002196 1.4e-19 100.9 82 59.8
Phvul.002G089600 Phaseolus vulgaris HOM05D001741 ORTHO05D002196 1.4e-19 100.9 82 59.8
AUR62005737 Chenopodium quinoa HOM05D001741 ORTHO05D002196 1.9e-19 100.5 82 57.3
Lalb_Chr17g0340421 Lupinus albus HOM05D001741 ORTHO05D002196 1.9e-19 100.5 82 59.8
Manes.01G189100 Manihot esculenta HOM05D001741 ORTHO05D002196 1.9e-19 100.5 82 58.5
TWI75G0813 Tripterygium wilfordii HOM05D001741 ORTHO05D002196 1.9e-19 100.5 82 58.5
AUR62028824 Chenopodium quinoa HOM05D001741 ORTHO05D002196 2.4e-19 100.1 82 56.1
Ca_04749_v3 Cicer arietinum L. HOM05D001741 ORTHO05D002196 2.4e-19 100.1 82 59.8
Dinv34211 Davidia involucrata HOM05D001741 ORTHO05D000654 2.4e-19 100.1 82 59.8
Haze_12052 Corylus avellana HOM05D001741 ORTHO05D002196 3.2e-19 99.8 82 57.3
TAR371G0100 Trochodendron aralioides HOM05D001741 ORTHO05D002196 4.2e-19 99.4 82 57.3
Actinidia31187 Actinidia chinensis HOM05D001741 ORTHO05D002196 5.4e-19 99.0 82 56.1
Cfa009018 Carpinus fangiana HOM05D001741 ORTHO05D002196 5.4e-19 99.0 82 57.3
Psat2g120160 Pisum sativum HOM05D001741 ORTHO05D002196 5.4e-19 99.0 82 59.8
PGR119G0661 Punica granatum HOM05D001741 ORTHO05D002196 5.4e-19 99.0 82 57.3
QL03p065432 Quercus lobata HOM05D001741 ORTHO05D002196 7.1e-19 98.6 82 58.5
Thhalv10018543m.g Eutrema salsugineum HOM05D001741 ORTHO05D002196 9.3e-19 98.2 82 57.3
arahy.Tifrunner.gnm1.ann1.78AWB5 Arachis hypogaea HOM05D001741 ORTHO05D002196 1.2e-18 97.8 82 56.1
Rhsim12G0130600 Rhododendron simsii HOM05D001741 ORTHO05D002196 1.2e-18 97.8 82 54.9
AT1G69800 Arabidopsis thaliana HOM05D001741 ORTHO05D002196 1.6e-18 97.4 82 56.1
Eucgr.G02534 Eucalyptus grandis HOM05D001741 ORTHO05D002196 1.6e-18 97.4 82 53.7
Nitab4.5_0006585g0020 Nicotiana tabacum HOM05D001741 ORTHO05D002196 1.6e-18 97.4 84 57.1
C06p43610 Brassica napus HOM05D001741 ORTHO05D002196 2.1e-18 97.1 82 57.3
BolC6t39433H Brassica oleracea HOM05D001741 ORTHO05D002196 2.1e-18 97.1 82 57.3
THA.LOC104822927 Tarenaya hassleriana HOM05D001741 ORTHO05D002196 2.1e-18 97.1 82 53.7
BcaB03g14759 Brassica carinata HOM05D001741 ORTHO05D002196 2.7e-18 96.7 82 56.1
Prupe.1G269400 Prunus persica HOM05D001741 ORTHO05D002196 2.7e-18 96.7 81 59.3
Aa31LG4G11010 Aethionema arabicum HOM05D001741 ORTHO05D002196 3.5e-18 96.3 82 56.1
BcaC08g46427 Brassica carinata HOM05D001741 ORTHO05D002196 3.5e-18 96.3 82 57.3
arahy.Tifrunner.gnm1.ann1.075A5E Arachis hypogaea HOM05D001741 ORTHO05D002196 4.6e-18 95.9 82 54.9
A07p36250 Brassica napus HOM05D001741 ORTHO05D002196 4.6e-18 95.9 82 56.1
BraA07t31197Z Brassica rapa HOM05D001741 ORTHO05D002196 4.6e-18 95.9 82 56.1
Lj2g0016570 Lotus japonicus HOM05D001741 ORTHO05D002196 4.6e-18 95.9 82 56.1
Sp5g24920 Schrenkiella parvula HOM05D001741 ORTHO05D002196 4.6e-18 95.9 82 54.9
Carub.0002s1650 Capsella rubella HOM05D001741 ORTHO05D002196 6.0e-18 95.5 82 53.7
vmacro16332 Vaccinium macrocarpon HOM05D001741 ORTHO05D002196 7.9e-18 95.1 82 54.9
BcaB05g24489 Brassica carinata HOM05D001741 ORTHO05D002196 1.0e-17 94.7 82 54.9
Lalb_Chr04g0256291 Lupinus albus HOM05D001741 ORTHO05D002196 1.0e-17 94.7 82 56.1
A02p16170 Brassica napus HOM05D001741 ORTHO05D002196 1.3e-17 94.4 82 54.9
BraA02t06676Z Brassica rapa HOM05D001741 ORTHO05D002196 1.3e-17 94.4 82 54.9
RcHm_v2.0_Chr4g0440371 Rosa chinensis HOM05D001741 ORTHO05D002196 1.3e-17 94.4 81 54.3
AL2G29070 Arabidopsis lyrata HOM05D001741 ORTHO05D002196 1.8e-17 94.0 82 53.7
FvH4_4g31780 Fragaria vesca HOM05D001741 ORTHO05D002196 1.8e-17 94.0 81 54.3
Nn4g23072 Nelumbo nucifera HOM05D001741 ORTHO05D002196 1.8e-17 94.0 82 52.4
DCAR_031047 Daucus carota HOM05D001741 ORTHO05D002196 3.0e-17 93.2 84 52.4
SalBow8G5527 Salvia bowleyana HOM05D001741 ORTHO05D002196 3.0e-17 93.2 82 53.7
BcaC03g15132 Brassica carinata HOM05D001741 ORTHO05D002196 5.1e-17 92.4 82 52.4
C02p26950 Brassica napus HOM05D001741 ORTHO05D002196 5.1e-17 92.4 82 52.4
BolC2t08757H Brassica oleracea HOM05D001741 ORTHO05D002196 5.1e-17 92.4 82 52.4
FAN12G0099 Fragaria x ananassa HOM05D001741 ORTHO05D002196 8.7e-17 91.7 81 53.1
MD13G1077800 Malus domestica HOM05D001741 ORTHO05D002196 1.1e-16 91.3 81 56.8
Migut.E00110 Erythranthe guttata HOM05D001741 ORTHO05D002196 1.5e-16 90.9 82 51.2
CSS0002275 Camellia sinensis var. sinensis HOM05D001741 ORTHO05D002196 1.9e-16 90.5 98 50.0
CSS0017018 Camellia sinensis var. sinensis HOM05D001741 ORTHO05D002196 1.9e-16 90.5 98 50.0
Oeu000634.1 Olea europaea HOM05D001741 ORTHO05D002196 1.9e-16 90.5 82 52.4
Cpa.g.sc183.19 Carica papaya HOM05D001741 ORTHO05D002196 3.3e-16 89.7 82 52.4
DCAR_027392 Daucus carota HOM05D001741 ORTHO05D002196 3.3e-16 89.7 82 51.2
Zm00001eb160610 Zea mays HOM05D001741 ORTHO05D002196 3.3e-16 89.7 82 53.7
DCAR_007137 Daucus carota HOM05D001741 ORTHO05D002196 7.4e-16 88.6 84 51.2
ECA246G1643 Erigeron canadensis HOM05D001741 ORTHO05D002196 7.4e-16 88.6 82 51.2
FAN07G0918 Fragaria x ananassa HOM05D001741 ORTHO05D002196 7.4e-16 88.6 81 54.3
HanXRQChr17g0544801 Helianthus annuus HOM05D001741 ORTHO05D002196 7.4e-16 88.6 82 51.2
CiPaw.05G138800 Carya illinoinensis HOM05D001741 ORTHO05D002196 9.6e-16 88.2 82 52.4
CDE06G0312 Ceratophyllum demersum HOM05D001741 ORTHO05D002196 9.6e-16 88.2 82 53.7
SGA_v2.0_scaffold63G21667 Striga asiatica HOM05D001741 ORTHO05D002196 9.6e-16 88.2 82 47.6
MSTRG.2356 Avicennia marina HOM05D001741 ORTHO05D002196 1.3e-15 87.8 82 47.6
Lsat_1_v5_gn_3_51321 Lactuca sativa HOM05D001741 ORTHO05D002196 2.8e-15 86.7 82 51.2
MSTRG.13404 Avicennia marina HOM05D001741 ORTHO05D002196 3.6e-15 86.3 82 50.0
MD16G1077600 Malus domestica HOM05D001741 ORTHO05D002196 3.6e-15 86.3 62 66.1
HPP92_007637 Vanilla planifolia HOM05D001741 ORTHO05D002196 3.6e-15 86.3 82 52.4
MBI01_g12908_MAGBIO Magnolia biondii HOM05D001741 ORTHO05D002196 6.2e-15 85.5 82 51.2
Aqoxy3G03306 Aquilegia oxysepala HOM05D001741 ORTHO05D002196 1.1e-14 84.7 82 51.2
ATR1120G113 Amborella trichopoda HOM05D001741 ORTHO05D002196 1.8e-14 84.0 82 47.6
unitig_8.g3949 Utricularia gibba HOM05D001741 ORTHO05D002196 2.6e-13 80.1 79 44.3
Psat4g106720 Pisum sativum HOM05D001741 ORTHO05D002196 3.4e-13 79.7 81 53.1
SEGI_38493 Sequoiadendron giganteum HOM05D001741 ORTHO05D002196 3.4e-13 79.7 82 50.0
FvH4_c17g00030 Fragaria vesca HOM05D001741 ORTHO05D002196 4.5e-13 79.3 66 62.1
Peaxi162Scf00209g00231 Petunia axillaris HOM05D001741 ORTHO05D002196 4.5e-13 79.3 91 44.0
unitig_22.g5542 Utricularia gibba HOM05D001741 ORTHO05D002196 2.9e-12 76.6 85 43.5
Psat2g101640 Pisum sativum HOM05D001741 ORTHO05D002196 4.9e-12 75.9 95 45.3
Gohir.D13G071900 Gossypium hirsutum HOM05D001741 ORTHO05D002196 8.4e-12 75.1 47 66.0
Mapoly0009s0230 Marchantia polymorpha HOM05D001741 ORTHO05D002196 8.4e-12 75.1 79 40.5
AagrBONN_evm.TU.Sc2ySwM_344.4530 Anthoceros agrestis HOM05D001741 ORTHO05D002196 5.5e-11 72.4 81 40.7
SMO367G0709 Selaginella moellendorffii HOM05D001741 ORTHO05D002196 2.1e-10 70.5 82 40.2
FAN07G2320 Fragaria x ananassa HOM05D001741 ORTHO05D200177 4.6e-10 69.3 46 76.1
FAN11G3289 Fragaria x ananassa HOM05D017331 ORTHO05D002196 6.0e-10 68.9 102 44.1
Pp3c16_13330 Physcomitrium patens HOM05D001741 ORTHO05D002196 6.0e-10 68.9 79 40.5
FAN04G0922 Fragaria x ananassa HOM05D006567 ORTHO05D015939 3.0e-09 66.6 48 70.8
FAN05G4737 Fragaria x ananassa HOM05D017331 ORTHO05D035399 8.7e-09 65.1 45 73.3
Atru.chr11.1908 Acer truncatum HOM05D001741 ORTHO05D002196 1.1e-08 64.7 66 47.0
FvH4_5g32951 Fragaria vesca HOM05D017331 ORTHO05D002196 1.1e-08 64.7 45 73.3
FAN07G0115 Fragaria x ananassa HOM05D001741 ORTHO05D002196 7.4e-08 62.0 42 64.3
FvH4_6g25851 Fragaria vesca HOM05D017331 ORTHO05D035399 9.6e-08 61.6 45 71.1
Psat2g085720 Pisum sativum HOM05D001741 ORTHO05D002196 1.6e-07 60.8 51 60.8
TAR374G0301 Trochodendron aralioides HOM05D001741 ORTHO05D002196 2.8e-07 60.1 80 35.0
Aqoxy5G03395 Aquilegia oxysepala HOM05D001741 ORTHO05D002196 3.7e-07 59.7 80 36.2
Aqoxy7G00969 Aquilegia oxysepala HOM05D001741 ORTHO05D002196 3.7e-07 59.7 80 36.2
Gohir.A11G036200 Gossypium hirsutum HOM05D001741 ORTHO05D002196 8.1e-07 58.5 80 36.2
vmacro19201 Vaccinium macrocarpon HOM05D001741 ORTHO05D002196 8.1e-07 58.5 80 35.0
Actinidia25580 Actinidia chinensis HOM05D001741 ORTHO05D002196 1.1e-06 58.2 80 35.0
TWI39G0196 Tripterygium wilfordii HOM05D001741 ORTHO05D002196 1.1e-06 58.2 80 33.8
arahy.Tifrunner.gnm1.ann1.5BLU0Q Arachis hypogaea HOM05D001741 ORTHO05D002196 1.4e-06 57.8 101 29.7
CSS0031290 Camellia sinensis var. sinensis HOM05D001741 ORTHO05D002196 1.4e-06 57.8 80 32.5
Psat2g132640 Pisum sativum HOM05D001741 ORTHO05D002196 1.4e-06 57.8 39 66.7
TWI14G0083 Tripterygium wilfordii HOM05D001741 ORTHO05D002196 1.4e-06 57.8 80 32.5
Carub.0005s1472 Capsella rubella HOM05D001741 ORTHO05D002196 1.8e-06 57.4 80 32.5
CiPaw.11G008300 Carya illinoinensis HOM05D001741 ORTHO05D002196 2.4e-06 57.0 111 28.8
Potri.015G094700 Populus trichocarpa HOM05D001741 ORTHO05D002196 2.4e-06 57.0 80 32.5
Sabra15G0116100 Salix brachista HOM05D001741 ORTHO05D002196 2.4e-06 57.0 80 32.5
Gohir.D12G191400 Gossypium hirsutum HOM05D001741 ORTHO05D002196 3.1e-06 56.6 80 33.8
Gorai.008G205700 Gossypium raimondii HOM05D001741 ORTHO05D002196 3.1e-06 56.6 80 32.5
COL.COLO4_28099 Corchorus olitorius HOM05D001741 ORTHO05D002196 4.0e-06 56.2 80 33.8
Gohir.D11G039700 Gossypium hirsutum HOM05D001741 ORTHO05D002196 4.0e-06 56.2 80 35.0
Gorai.007G042700 Gossypium raimondii HOM05D001741 ORTHO05D002196 4.0e-06 56.2 80 35.0
Oeu018538.1 Olea europaea HOM05D001741 ORTHO05D002196 4.0e-06 56.2 80 32.5
PGR044G0132 Punica granatum HOM05D001741 ORTHO05D002196 4.0e-06 56.2 80 30.0
Rhsim08G0189400 Rhododendron simsii HOM05D001741 ORTHO05D002196 4.0e-06 56.2 80 32.5
RhsimUnG0231700 Rhododendron simsii HOM05D001741 ORTHO05D002196 4.0e-06 56.2 80 32.5
Thecc.03G128100 Theobroma cacao HOM05D001741 ORTHO05D002196 4.0e-06 56.2 80 35.0
AT3G48530 Arabidopsis thaliana HOM05D001741 ORTHO05D002196 5.3e-06 55.8 80 31.2
BcaC09g49874 Brassica carinata HOM05D001741 ORTHO05D002196 5.3e-06 55.8 80 32.5
C01p32240 Brassica napus HOM05D001741 ORTHO05D002196 5.3e-06 55.8 80 32.5
BolC1t03130H Brassica oleracea HOM05D001741 ORTHO05D002196 5.3e-06 55.8 80 32.5
Dinv11166 Davidia involucrata HOM05D001741 ORTHO05D002196 5.3e-06 55.8 80 31.2
Prupe.5G152000 Prunus persica HOM05D001741 ORTHO05D002196 5.3e-06 55.8 80 30.0
Sopen03g030440 Solanum pennellii HOM05D001741 ORTHO05D002196 5.3e-06 55.8 80 31.2
GSVIVG01008534001 Vitis vinifera HOM05D001741 ORTHO05D002196 5.3e-06 55.8 80 35.0
Actinidia33101 Actinidia chinensis HOM05D001741 ORTHO05D002196 6.9e-06 55.5 80 32.5
AL5G27980 Arabidopsis lyrata HOM05D001741 ORTHO05D002196 6.9e-06 55.5 80 31.2
BcaB05g23010 Brassica carinata HOM05D001741 ORTHO05D002196 6.9e-06 55.5 80 31.2
A01p25670 Brassica napus HOM05D001741 ORTHO05D002196 6.9e-06 55.5 80 32.5
A06p19130 Brassica napus HOM05D001741 ORTHO05D002196 6.9e-06 55.5 80 31.2
BraA01t02448Z Brassica rapa HOM05D001741 ORTHO05D002196 6.9e-06 55.5 80 32.5
BraA06t24997Z Brassica rapa HOM05D001741 ORTHO05D002196 6.9e-06 55.5 80 31.2
CAN.G352.18 Capsicum annuum HOM05D001741 ORTHO05D002196 6.9e-06 55.5 80 32.5
HanXRQChr08g0236781 Helianthus annuus HOM05D001741 ORTHO05D002196 6.9e-06 55.5 80 32.5
Rhsim12G0174100 Rhododendron simsii HOM05D001741 ORTHO05D002196 6.9e-06 55.5 80 30.0
Sabra12G0071000 Salix brachista HOM05D001741 ORTHO05D002196 6.9e-06 55.5 80 31.2
BcaB01g00800 Brassica carinata HOM05D001741 ORTHO05D002196 9.0e-06 55.1 80 31.2
CARHR157330 Cardamine hirsuta HOM05D001741 ORTHO05D002196 9.0e-06 55.1 80 32.5
Eucgr.K02734 Eucalyptus grandis HOM05D001741 ORTHO05D002196 9.0e-06 55.1 159 26.4
Gohir.A12G189100 Gossypium hirsutum HOM05D001741 ORTHO05D002196 9.0e-06 55.1 80 32.5
Sp5g13450 Schrenkiella parvula HOM05D001741 ORTHO05D002196 9.0e-06 55.1 80 31.2
Solyc03g111310.3 Solanum lycopersicum HOM05D001741 ORTHO05D002196 9.0e-06 55.1 80 31.2
PGSC0003DMG400015241 Solanum tuberosum HOM05D001741 ORTHO05D002196 9.0e-06 55.1 80 31.2


User provided reference genes

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