Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g09382 Fragaria vesca HOM05D004969 ORTHO05D006085 2.0e-72 275.8 153 100.0
FvH4_7g07530 Fragaria vesca HOM05D004969 ORTHO05D006085 2.6e-64 248.8 142 95.1
FAN06G2886 Fragaria x ananassa HOM05D004969 ORTHO05D006085 8.8e-60 233.8 142 92.3
FAN10G2597 Fragaria x ananassa HOM05D004969 ORTHO05D006085 5.7e-59 231.1 142 91.5
FAN03G1223 Fragaria x ananassa HOM05D004969 ORTHO05D006085 6.3e-58 227.6 185 73.0
FAN01G1532 Fragaria x ananassa HOM05D004969 ORTHO05D006085 1.6e-53 213.0 185 70.3
RcHm_v2.0_Chr1g0339281 Rosa chinensis HOM05D004969 ORTHO05D006085 7.7e-40 167.5 145 64.1
Dinv41780 Davidia involucrata HOM05D004969 ORTHO05D006085 1.2e-32 143.7 143 57.3
MD07G1079600 Malus domestica HOM05D004969 ORTHO05D006085 1.2e-32 143.7 159 54.1
Prupe.2G102700 Prunus persica HOM05D004969 ORTHO05D006085 2.7e-32 142.5 158 53.8
MD02G1235900 Malus domestica HOM05D004969 ORTHO05D006085 1.7e-31 139.8 161 52.2
Cfa005580 Carpinus fangiana HOM05D004969 ORTHO05D006085 2.5e-30 136.0 143 57.3
TAR381G0816 Trochodendron aralioides HOM05D004969 ORTHO05D006085 9.5e-30 134.0 140 54.3
GSVIVG01025999001 Vitis vinifera HOM05D004969 ORTHO05D006085 9.5e-30 134.0 156 55.1
Actinidia23029 Actinidia chinensis HOM05D004969 ORTHO05D006085 1.0e-28 130.6 149 55.0
ATR1136G165 Amborella trichopoda HOM05D004969 ORTHO05D006085 1.8e-28 129.8 139 55.4
CSS0003565 Camellia sinensis var. sinensis HOM05D004969 ORTHO05D006085 4.0e-28 128.6 157 48.4
CSS0028019 Camellia sinensis var. sinensis HOM05D004969 ORTHO05D006085 4.0e-28 128.6 157 48.4
MBI06_g36481_MAGBIO Magnolia biondii HOM05D004969 ORTHO05D006085 5.2e-28 128.3 139 59.0
CiPaw.06G151300 Carya illinoinensis HOM05D004969 ORTHO05D006085 3.4e-27 125.6 143 54.5
Ciclev10011792m.g Citrus clementina HOM05D004969 ORTHO05D006085 3.4e-27 125.6 141 50.4
VMungo0540G2242 Vigna mungo HOM05D004969 ORTHO05D006085 5.8e-27 124.8 142 54.9
Lsat_1_v5_gn_1_25461 Lactuca sativa HOM05D004969 ORTHO05D006085 1.7e-26 123.2 150 50.0
Phvul.006G083300 Phaseolus vulgaris HOM05D004969 ORTHO05D006085 2.2e-26 122.9 142 54.9
CAN.G2.7 Capsicum annuum HOM05D004969 ORTHO05D006085 6.4e-26 121.3 156 49.4
Potri.017G129800 Populus trichocarpa HOM05D004969 ORTHO05D006085 1.4e-25 120.2 144 52.8
Migut.N03359 Erythranthe guttata HOM05D004969 ORTHO05D006085 1.9e-25 119.8 140 52.9
HanXRQChr02g0036761 Helianthus annuus HOM05D004969 ORTHO05D006085 2.4e-25 119.4 159 49.1
DCAR_014392 Daucus carota HOM05D004969 ORTHO05D006085 4.1e-25 118.6 146 48.6
MBI06_g45016_MAGBIO Magnolia biondii HOM05D004969 ORTHO05D006085 1.6e-24 116.7 141 55.3
CANSAT78G2392 Cannabis sativa HOM05D004969 ORTHO05D006085 2.0e-24 116.3 141 51.1
CsaV3_5G020190 Cucumis sativus L. HOM05D004969 ORTHO05D006085 4.6e-24 115.2 142 45.8
Peaxi162Scf00391g00434 Petunia axillaris HOM05D004969 ORTHO05D006085 4.6e-24 115.2 154 50.6
Nitab4.5_0003818g0050 Nicotiana tabacum HOM05D004969 ORTHO05D006085 1.0e-23 114.0 156 47.4
Potri.004G087100 Populus trichocarpa HOM05D004969 ORTHO05D006085 1.7e-23 113.2 144 49.3
MELO3C025065.2 Cucumis melo HOM05D004969 ORTHO05D006085 2.3e-23 112.8 142 45.1
Lj6g0017586 Lotus japonicus HOM05D004969 ORTHO05D006085 3.9e-23 112.1 158 46.8
Lalb_Chr18g0053961 Lupinus albus HOM05D004969 ORTHO05D006085 3.9e-23 112.1 153 49.0
PGR042G0690 Punica granatum HOM05D004969 ORTHO05D006085 5.0e-23 111.7 147 46.9
Gorai.001G088300 Gossypium raimondii HOM05D004969 ORTHO05D006085 6.6e-23 111.3 142 52.1
Sabra17G0108000 Salix brachista HOM05D004969 ORTHO05D006085 6.6e-23 111.3 144 51.4
Solyc11g020300.2 Solanum lycopersicum HOM05D004969 ORTHO05D006085 6.6e-23 111.3 161 46.0
Sopen11g010590 Solanum pennellii HOM05D004969 ORTHO05D006085 8.6e-23 110.9 161 46.0
MSTRG.22462 Avicennia marina HOM05D004969 ORTHO05D006085 1.1e-22 110.5 144 49.3
ECA247G1475 Erigeron canadensis HOM05D004969 ORTHO05D006085 1.1e-22 110.5 165 46.1
Gohir.A07G077900 Gossypium hirsutum HOM05D004969 ORTHO05D006085 1.1e-22 110.5 142 49.3
Duzib211G0057 Durio zibethinus HOM05D004969 ORTHO05D006085 1.5e-22 110.2 142 52.1
Manes.02G076800 Manihot esculenta HOM05D004969 ORTHO05D006085 1.9e-22 109.8 153 47.1
Nitab4.5_0000365g0150 Nicotiana tabacum HOM05D004969 ORTHO05D006085 1.9e-22 109.8 149 53.0
Hund27125 Selenicereus undatus HOM05D004969 ORTHO05D006085 2.5e-22 109.4 173 46.8
Hund27130 Selenicereus undatus HOM05D004969 ORTHO05D006085 2.5e-22 109.4 173 46.8
COL.COLO4_05992 Corchorus olitorius HOM05D004598 ORTHO05D005550 3.3e-22 109.0 139 51.1
Ca_15098_v3 Cicer arietinum L. HOM05D004969 ORTHO05D006085 5.6e-22 108.2 148 53.4
CDE07G1303 Ceratophyllum demersum HOM05D004969 ORTHO05D006085 9.5e-22 107.5 145 45.5
Sed0015915 Sechium edule HOM05D004969 ORTHO05D006085 9.5e-22 107.5 153 47.1
CDE04G1977 Ceratophyllum demersum HOM05D004969 ORTHO05D006085 2.1e-21 106.3 140 45.0
Eucgr.A02100 Eucalyptus grandis HOM05D004969 ORTHO05D006085 2.1e-21 106.3 130 45.4
HanXRQChr04g0102091 Helianthus annuus HOM05D004969 ORTHO05D006085 2.8e-21 105.9 156 43.6
Hund31138 Selenicereus undatus HOM05D004969 ORTHO05D006085 3.6e-21 105.5 84 63.1
Cc10_g11320 Coffea canephora HOM05D004969 ORTHO05D006085 6.2e-21 104.8 142 45.8
Lalb_Chr15g0085491 Lupinus albus HOM05D004969 ORTHO05D006085 8.1e-21 104.4 147 46.9
Hund16636 Selenicereus undatus HOM05D004969 ORTHO05D006085 8.1e-21 104.4 84 61.9
ClCG01G008270 Citrullus lanatus HOM05D004969 ORTHO05D006085 1.4e-20 103.6 142 43.7
Cpa.g.sc116.57 Carica papaya HOM05D004969 ORTHO05D006085 2.3e-20 102.8 140 46.4
Glyma.11G202700 Glycine max HOM05D004969 ORTHO05D006085 2.3e-20 102.8 145 52.4
PSO170G6732 Papaver somniferum HOM05D004969 ORTHO05D006085 4.0e-20 102.1 149 46.3
Duzib133G0278 Durio zibethinus HOM05D004969 ORTHO05D006085 5.2e-20 101.7 141 46.8
Thecc.04G114600 Theobroma cacao HOM05D004969 ORTHO05D006085 6.8e-20 101.3 71 67.6
TWI53G0342 Tripterygium wilfordii HOM05D004969 ORTHO05D006085 6.8e-20 101.3 147 43.5
vmacro00973 Vaccinium macrocarpon HOM05D004969 ORTHO05D006085 8.9e-20 100.9 145 46.9
unitig_8.g3641 Utricularia gibba HOM05D004969 ORTHO05D006085 1.2e-19 100.5 149 45.6
Psat5g144880 Pisum sativum HOM05D004969 ORTHO05D006085 1.5e-19 100.1 72 66.7
PSO017G0293 Papaver somniferum HOM05D004969 ORTHO05D006085 2.0e-19 99.8 149 44.3
Aqoxy2G02250 Aquilegia oxysepala HOM05D004969 ORTHO05D006085 4.4e-19 98.6 144 45.1
Thhalv10013528m.g Eutrema salsugineum HOM05D004969 ORTHO05D006085 9.8e-19 97.4 156 46.8
Glyma.18G048200 Glycine max HOM05D004969 ORTHO05D006085 1.3e-18 97.1 146 50.7
Medtr3g063200 Medicago truncatula HOM05D004969 ORTHO05D006085 1.3e-18 97.1 147 49.0
HPP92_004464 Vanilla planifolia HOM05D004969 ORTHO05D006085 2.9e-18 95.9 150 44.0
Nn5g27434 Nelumbo nucifera HOM05D004969 ORTHO05D006085 3.7e-18 95.5 70 67.1
TWI77G0063 Tripterygium wilfordii HOM05D004969 ORTHO05D006085 3.7e-18 95.5 153 44.4
TPR.G37348 Trifolium pratense HOM05D004969 ORTHO05D006085 6.4e-18 94.7 71 69.0
Carub.0006s1483 Capsella rubella HOM05D004969 ORTHO05D006085 1.9e-17 93.2 154 43.5
CiPaw.05G038800 Carya illinoinensis HOM05D004969 ORTHO05D006085 1.9e-17 93.2 150 46.7
Sabra04G0057900 Salix brachista HOM05D004969 ORTHO05D006085 1.9e-17 93.2 124 49.2
Sc23g0001560 Simmondsia chinensis HOM05D004969 ORTHO05D006085 5.4e-17 91.7 153 44.4
BolC9t58883H Brassica oleracea HOM05D004969 ORTHO05D006085 9.2e-17 90.9 150 42.7
BolC2t06766H Brassica oleracea HOM05D004969 ORTHO05D006085 7.8e-16 87.8 144 47.2
A10p22590 Brassica napus HOM05D004969 ORTHO05D006085 3.0e-15 85.9 164 42.7
BraA10t44321Z Brassica rapa HOM05D004969 ORTHO05D006085 3.0e-15 85.9 164 42.7
Os04g0439900 Oryza sativa ssp. japonica HOM05D004969 ORTHO05D006085 6.6e-15 84.7 142 42.3
SEGI_27085 Sequoiadendron giganteum HOM05D004969 ORTHO05D006085 6.6e-15 84.7 149 39.6
HPP92_004490 Vanilla planifolia HOM05D004969 ORTHO05D006085 6.6e-15 84.7 138 42.8
C09p60500 Brassica napus HOM05D004969 ORTHO05D006085 8.6e-15 84.3 152 42.8
Sp6g27550 Schrenkiella parvula HOM05D004969 ORTHO05D006085 1.5e-14 83.6 72 58.3
BraA02t05337Z Brassica rapa HOM05D004969 ORTHO05D006085 3.3e-14 82.4 145 44.8
A02p03690 Brassica napus HOM05D006375 ORTHO05D008188 4.3e-14 82.0 145 44.8
EL10Ac1g00146 Beta vulgaris HOM05D004969 ORTHO05D006085 9.5e-14 80.9 209 34.9
MSTRG.1535 Avicennia marina HOM05D004969 ORTHO05D006085 1.6e-13 80.1 144 43.1
Gohir.D07G082700 Gossypium hirsutum HOM05D004969 ORTHO05D006085 1.6e-13 80.1 105 47.6
Rhsim12G0005600 Rhododendron simsii HOM05D004969 ORTHO05D006085 2.8e-13 79.3 212 32.5
THA.LOC104827189 Tarenaya hassleriana HOM05D004969 ORTHO05D006085 2.8e-13 79.3 148 35.8
C02p08510 Brassica napus HOM05D006375 ORTHO05D008188 8.1e-13 77.8 146 42.5
Zm00001eb422870 Zea mays HOM05D004969 ORTHO05D006085 8.1e-13 77.8 142 38.0
Zm00001eb082230 Zea mays HOM05D004969 ORTHO05D006085 1.4e-12 77.0 140 39.3
arahy.Tifrunner.gnm1.ann1.70N71I Arachis hypogaea HOM05D004969 ORTHO05D006085 5.2e-12 75.1 123 48.8
BcaC03g18507 Brassica carinata HOM05D006375 ORTHO05D008188 4.4e-11 72.0 131 43.5
AUR62023559 Chenopodium quinoa HOM05D004969 ORTHO05D006085 3.8e-10 68.9 157 39.5
THA.LOC104802933 Tarenaya hassleriana HOM05D004969 ORTHO05D006085 1.9e-09 66.6 73 45.2
THA.LOC104802935 Tarenaya hassleriana HOM05D004969 ORTHO05D006085 1.9e-09 66.6 73 45.2
SGA_v2.0_scaffold25G11066 Striga asiatica HOM05D004969 ORTHO05D007712 4.1e-09 65.5 109 43.1
arahy.Tifrunner.gnm1.ann1.247CUK Arachis hypogaea HOM05D004969 ORTHO05D006085 9.2e-09 64.3 123 45.5
BcaB08g36833 Brassica carinata HOM05D004969 ORTHO05D006085 4.6e-08 62.0 148 36.5
Haze_10772 Corylus avellana HOM05D004969 ORTHO05D006085 1.3e-07 60.5 97 48.5
Gohir.A07G173840 Gossypium hirsutum HOM05D004969 ORTHO05D006085 1.3e-07 60.5 90 42.2
Oeu064082.1 Olea europaea HOM05D004969 ORTHO05D006085 1.7e-07 60.1 94 53.2
HPP92_017745 Vanilla planifolia HOM05D004969 ORTHO05D006085 2.3e-07 59.7 84 42.9
AUR62004590 Chenopodium quinoa HOM05D004969 ORTHO05D006085 1.9e-06 56.6 100 39.0
QL11p019695 Quercus lobata HOM05D004969 ORTHO05D006085 1.9e-06 56.6 100 49.0


User provided reference genes

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