Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g09210 Fragaria vesca HOM05D004631 ORTHO05D005223 2.8e-82 308.5 154 100.0
FAN24G1590 Fragaria x ananassa HOM05D004631 ORTHO05D005223 1.3e-79 299.7 154 98.1
FAN27G0193 Fragaria x ananassa HOM05D004631 ORTHO05D005223 3.0e-76 288.5 154 95.5
RcHm_v2.0_Chr6g0265061 Rosa chinensis HOM05D004631 ORTHO05D005223 2.0e-35 152.9 126 70.6
FvH4_6g52650 Fragaria vesca HOM05D004631 ORTHO05D005223 3.7e-34 148.7 181 51.4
FAN14G1903 Fragaria x ananassa HOM05D004631 ORTHO05D005223 9.2e-33 144.1 182 51.1
RcHm_v2.0_Chr2g0174181 Rosa chinensis HOM05D004631 ORTHO05D005223 3.5e-32 142.1 136 58.8
FAN02G2863 Fragaria x ananassa HOM05D004631 ORTHO05D005223 7.8e-32 141.0 181 49.7
FAN05G1873 Fragaria x ananassa HOM05D004631 ORTHO05D005223 7.8e-32 141.0 182 50.5
Prupe.3G299600 Prunus persica HOM05D004631 ORTHO05D005223 3.0e-31 139.0 181 49.7
CANSAT64G0886 Cannabis sativa HOM05D004631 ORTHO05D005223 1.9e-30 136.3 137 53.3
FAN09G3073 Fragaria x ananassa HOM05D004631 ORTHO05D005223 1.9e-30 136.3 182 48.9
PGR142G2057 Punica granatum HOM05D004631 ORTHO05D005223 7.3e-30 134.4 133 58.6
Dinv33383 Davidia involucrata HOM05D004631 ORTHO05D005223 1.2e-29 133.7 131 60.3
Prupe.8G176800 Prunus persica HOM05D004631 ORTHO05D005223 3.6e-29 132.1 162 50.6
Haze_14815 Corylus avellana HOM05D004631 ORTHO05D005223 4.7e-29 131.7 119 59.7
Eucgr.I01692 Eucalyptus grandis HOM05D004631 ORTHO05D005223 4.7e-29 131.7 180 46.1
MD17G1018100 Malus domestica HOM05D004631 ORTHO05D005223 4.7e-29 131.7 132 56.1
CiPaw.04G033100 Carya illinoinensis HOM05D004631 ORTHO05D005223 6.2e-29 131.3 136 54.4
CAN.G473.59 Capsicum annuum HOM05D004631 ORTHO05D005223 8.1e-29 131.0 129 52.7
QL02p072911 Quercus lobata HOM05D004631 ORTHO05D005223 8.1e-29 131.0 119 58.0
Actinidia05943 Actinidia chinensis HOM05D000918 ORTHO05D000791 1.1e-28 130.6 127 55.1
MSTRG.24067 Avicennia marina HOM05D004631 ORTHO05D005223 1.1e-28 130.6 157 49.0
vmacro05924 Vaccinium macrocarpon HOM05D004631 ORTHO05D005223 1.1e-28 130.6 129 56.6
Glyma.19G082400 Glycine max HOM05D004631 ORTHO05D005223 1.4e-28 130.2 163 47.9
Gorai.011G093000 Gossypium raimondii HOM05D004631 ORTHO05D005223 1.4e-28 130.2 119 53.8
PSO782G2324 Papaver somniferum HOM05D004631 ORTHO05D005223 1.4e-28 130.2 160 45.6
vmacro18314 Vaccinium macrocarpon HOM05D004631 ORTHO05D005223 1.4e-28 130.2 119 57.1
Cfa007277 Carpinus fangiana HOM05D004631 ORTHO05D005223 1.8e-28 129.8 136 53.7
Ca_04405_v3 Cicer arietinum L. HOM05D004631 ORTHO05D005223 1.8e-28 129.8 119 57.1
Duzib264G0826 Durio zibethinus HOM05D004631 ORTHO05D005223 1.8e-28 129.8 119 55.5
Glyma.16G063100 Glycine max HOM05D004631 ORTHO05D005223 1.8e-28 129.8 164 47.6
Gohir.D10G085100 Gossypium hirsutum HOM05D004631 ORTHO05D005223 1.8e-28 129.8 119 53.8
TAR371G0552 Trochodendron aralioides HOM05D004631 ORTHO05D005223 1.8e-28 129.8 128 57.0
DCAR_021756 Daucus carota HOM05D004631 ORTHO05D005223 2.4e-28 129.4 155 49.0
Potri.001G264500 Populus trichocarpa HOM05D004631 ORTHO05D005223 2.4e-28 129.4 136 53.7
RhsimUnG0241300 Rhododendron simsii HOM05D004631 ORTHO05D005223 2.4e-28 129.4 130 56.2
Atru.chr6.2487 Acer truncatum HOM05D004631 ORTHO05D005223 3.1e-28 129.0 139 54.0
ECA246G0472 Erigeron canadensis HOM05D004631 ORTHO05D005223 3.1e-28 129.0 116 60.3
MD09G1017300 Malus domestica HOM05D004631 ORTHO05D005223 3.1e-28 129.0 119 57.1
Thecc.04G027600 Theobroma cacao HOM05D004631 ORTHO05D005223 3.1e-28 129.0 133 52.6
Hma1.2p1_0227F.1_g095910 Hydrangea macrophylla HOM05D004631 ORTHO05D005223 4.0e-28 128.6 139 53.2
Sc03g0007030 Simmondsia chinensis HOM05D004631 ORTHO05D005223 4.0e-28 128.6 123 56.1
GSVIVG01001850001 Vitis vinifera HOM05D004631 ORTHO05D005223 4.0e-28 128.6 136 51.5
arahy.Tifrunner.gnm1.ann1.5W0L45 Arachis hypogaea HOM05D004631 ORTHO05D005223 5.2e-28 128.3 138 50.7
arahy.Tifrunner.gnm1.ann1.NS464T Arachis hypogaea HOM05D004631 ORTHO05D005223 5.2e-28 128.3 138 50.7
Lsat_1_v5_gn_0_32720 Lactuca sativa HOM05D004631 ORTHO05D005223 5.2e-28 128.3 119 58.0
PGSC0003DMG400020270 Solanum tuberosum HOM05D004631 ORTHO05D005223 5.2e-28 128.3 127 52.8
Lj2g0014181 Lotus japonicus HOM05D004631 ORTHO05D005223 6.8e-28 127.9 128 53.9
Lalb_Chr14g0363051 Lupinus albus HOM05D004631 ORTHO05D005223 6.8e-28 127.9 132 50.8
Dinv25693 Davidia involucrata HOM05D004631 ORTHO05D005223 8.9e-28 127.5 119 59.7
Gohir.A10G160500 Gossypium hirsutum HOM05D004631 ORTHO05D005223 8.9e-28 127.5 119 52.9
HanXRQChr17g0549531 Helianthus annuus HOM05D004631 ORTHO05D005223 8.9e-28 127.5 119 57.1
COL.COLO4_29276 Corchorus olitorius HOM05D004631 ORTHO05D005223 1.2e-27 127.1 119 52.9
CsaV3_6G001200 Cucumis sativus L. HOM05D004631 ORTHO05D005223 1.2e-27 127.1 137 51.8
Rhsim08G0046200 Rhododendron simsii HOM05D004631 ORTHO05D005223 1.2e-27 127.1 122 57.4
TWI59G0755 Tripterygium wilfordii HOM05D004631 ORTHO05D005223 1.2e-27 127.1 136 50.0
Medtr6g022770 Medicago truncatula HOM05D004631 ORTHO05D005223 1.5e-27 126.7 119 53.8
Medtr6g023080 Medicago truncatula HOM05D004631 ORTHO05D005223 1.5e-27 126.7 129 52.7
Psat1g084240 Pisum sativum HOM05D004631 ORTHO05D005223 1.5e-27 126.7 119 55.5
Lj7A605T75 Lonicera japonica HOM05D004631 ORTHO05D005223 2.0e-27 126.3 130 55.4
Sed0025843 Sechium edule HOM05D004631 ORTHO05D005223 2.0e-27 126.3 137 53.3
AL5G16540 Arabidopsis lyrata HOM05D004631 ORTHO05D005223 2.6e-27 125.9 127 54.3
CARHR148590 Cardamine hirsuta HOM05D004631 ORTHO05D005223 2.6e-27 125.9 127 52.0
Cpa.g.c34704 Carica papaya HOM05D004631 ORTHO05D005223 2.6e-27 125.9 136 50.0
PSO063G4908 Papaver somniferum HOM05D004631 ORTHO05D005223 2.6e-27 125.9 160 45.0
Sabra16G0162600 Salix brachista HOM05D004631 ORTHO05D005223 2.6e-27 125.9 136 52.9
CSS0019664 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 3.4e-27 125.6 154 48.7
AT3G27310 Arabidopsis thaliana HOM05D004631 ORTHO05D005223 4.4e-27 125.2 127 53.5
CSS0005098 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 4.4e-27 125.2 173 47.4
MBI05_g32279_MAGBIO Magnolia biondii HOM05D004631 ORTHO05D005223 5.8e-27 124.8 128 55.5
Manes.15G156400 Manihot esculenta HOM05D004631 ORTHO05D005223 5.8e-27 124.8 136 50.0
Solyc02g093820.4 Solanum lycopersicum HOM05D004631 ORTHO05D005223 5.8e-27 124.8 127 51.2
Sopen02g038460 Solanum pennellii HOM05D004631 ORTHO05D005223 5.8e-27 124.8 127 51.2
Thhalv10004822m.g Eutrema salsugineum HOM05D004631 ORTHO05D005223 7.6e-27 124.4 127 53.5
Sed0000329 Sechium edule HOM05D004631 ORTHO05D005223 7.6e-27 124.4 119 55.5
Nn4g22438 Nelumbo nucifera HOM05D004631 ORTHO05D005223 9.9e-27 124.0 166 45.8
CSS0019474 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 1.3e-26 123.6 119 53.8
CiPaw.03G050500 Carya illinoinensis HOM05D004631 ORTHO05D005223 1.3e-26 123.6 128 53.9
Potri.009G059300 Populus trichocarpa HOM05D004631 ORTHO05D005223 1.3e-26 123.6 174 46.0
TPR.G29003 Trifolium pratense HOM05D004631 ORTHO05D005223 1.3e-26 123.6 129 51.9
Phvul.008G148800 Phaseolus vulgaris HOM05D004631 ORTHO05D005223 1.7e-26 123.2 133 48.9
TAR629G3282 Trochodendron aralioides HOM05D004631 ORTHO05D005223 2.2e-26 122.9 119 57.1
MSTRG.3110 Avicennia marina HOM05D004631 ORTHO05D005223 3.8e-26 122.1 122 54.9
Manes.07G089400 Manihot esculenta HOM05D004631 ORTHO05D005223 3.8e-26 122.1 136 51.5
Carub.0005s0558 Capsella rubella HOM05D004631 ORTHO05D005223 4.9e-26 121.7 127 52.0
Migut.H00060 Erythranthe guttata HOM05D004631 ORTHO05D005223 6.4e-26 121.3 119 50.4
Hma1.2p1_0279F.1_g112270 Hydrangea macrophylla HOM05D004631 ORTHO05D005223 6.4e-26 121.3 139 51.8
BcaC06g31006 Brassica carinata HOM05D004631 ORTHO05D005223 8.4e-26 120.9 127 49.6
Duzib147G1024 Durio zibethinus HOM05D004631 ORTHO05D005223 8.4e-26 120.9 159 44.0
MD10G1138200 Malus domestica HOM05D004631 ORTHO05D005223 8.4e-26 120.9 164 47.0
Sp2g16470 Schrenkiella parvula HOM05D004631 ORTHO05D005223 1.1e-25 120.6 127 51.2
BcaC06g33833 Brassica carinata HOM05D004631 ORTHO05D005223 1.4e-25 120.2 127 48.8
C07p36360 Brassica napus HOM05D004631 ORTHO05D005223 1.4e-25 120.2 127 48.8
BolC7t44152H Brassica oleracea HOM05D004631 ORTHO05D005223 1.4e-25 120.2 127 48.8
HanXRQChr15g0487081 Helianthus annuus HOM05D004631 ORTHO05D005223 1.4e-25 120.2 139 50.4
Gohir.A05G341700 Gossypium hirsutum HOM05D004631 ORTHO05D005223 1.9e-25 119.8 119 50.4
VMungo1383G3654 Vigna mungo HOM05D004631 ORTHO05D005223 1.9e-25 119.8 116 51.7
DCAR_011290 Daucus carota HOM05D004631 ORTHO05D005223 2.4e-25 119.4 160 44.4
Sabra09G0043700 Salix brachista HOM05D004631 ORTHO05D005223 2.4e-25 119.4 119 51.3
Cc07_g00410 Coffea canephora HOM05D004631 ORTHO05D005223 3.2e-25 119.0 119 52.1
SGA_v2.0_scaffold18G08240 Striga asiatica HOM05D004631 ORTHO05D005223 3.2e-25 119.0 119 52.1
TWI23G0469 Tripterygium wilfordii HOM05D004631 ORTHO05D005223 3.2e-25 119.0 136 47.1
A06p41300 Brassica napus HOM05D004631 ORTHO05D005223 4.2e-25 118.6 127 48.0
BraA06t27055Z Brassica rapa HOM05D004631 ORTHO05D005223 4.2e-25 118.6 127 48.0
Gohir.D04G079800 Gossypium hirsutum HOM05D004631 ORTHO05D005223 7.1e-25 117.9 119 50.4
Gorai.012G089800 Gossypium raimondii HOM05D004631 ORTHO05D005223 7.1e-25 117.9 119 50.4
Aqoxy5G03556 Aquilegia oxysepala HOM05D004631 ORTHO05D005223 9.3e-25 117.5 119 53.8
TPR.G2332 Trifolium pratense HOM05D004631 ORTHO05D005223 9.3e-25 117.5 121 52.1
Oeu050430.2 Olea europaea HOM05D004631 ORTHO05D005223 1.2e-24 117.1 119 52.1
Oeu058758.2 Olea europaea HOM05D004631 ORTHO05D005223 1.6e-24 116.7 131 52.7
Aa31LG2G5340 Aethionema arabicum HOM05D004631 ORTHO05D005223 3.5e-24 115.5 146 47.3
ClCG11G006850 Citrullus lanatus HOM05D004631 ORTHO05D005223 3.5e-24 115.5 161 44.1
unitig_62.g23368 Utricularia gibba HOM05D004631 ORTHO05D005223 4.6e-24 115.2 141 47.5
Lsat_1_v5_gn_4_185741 Lactuca sativa HOM05D004631 ORTHO05D005223 7.8e-24 114.4 119 54.6
HPP92_028037 Vanilla planifolia HOM05D004631 ORTHO05D005223 7.8e-24 114.4 134 48.5
Ah.11g049900 Amaranthus hybridus HOM05D000470 ORTHO05D000348 1.0e-23 114.0 119 47.9
ATR0824G076 Amborella trichopoda HOM05D004631 ORTHO05D005223 1.0e-23 114.0 118 49.2
AUR62011927 Chenopodium quinoa HOM05D004631 ORTHO05D005223 8.7e-23 110.9 119 49.6
AUR62032242 Chenopodium quinoa HOM05D004631 ORTHO05D005223 1.1e-22 110.5 119 48.7
ECA232G0338 Erigeron canadensis HOM05D004631 ORTHO05D005223 1.5e-22 110.2 129 48.8
MELO3C008218.2 Cucumis melo HOM05D004631 ORTHO05D005223 3.3e-22 109.0 103 60.2
EL10Ac5g10455 Beta vulgaris HOM05D004631 ORTHO05D005223 5.6e-22 108.2 128 47.7
Medtr0531s0010 Medicago truncatula HOM05D004631 ORTHO05D005223 1.6e-21 106.7 96 58.3
Peaxi162Scf00420g00342 Petunia axillaris HOM05D004631 ORTHO05D005223 6.2e-21 104.8 136 45.6
Peaxi162Scf00420g00345 Petunia axillaris HOM05D004631 ORTHO05D005223 6.2e-21 104.8 136 45.6
Ciclev10016175m.g Citrus clementina HOM05D004631 ORTHO05D005223 1.8e-20 103.2 169 38.5
Zm00001eb425170 Zea mays HOM05D004631 ORTHO05D005223 1.8e-20 103.2 135 48.1
Os04g0485200 Oryza sativa ssp. japonica HOM05D004631 ORTHO05D005223 2.4e-20 102.8 124 46.8
Lj1g0026695 Lotus japonicus HOM05D004631 ORTHO05D005223 1.2e-19 100.5 122 50.0
SalBow1G3920 Salvia bowleyana HOM05D004631 ORTHO05D005223 1.2e-19 100.5 150 40.0
SalBow1G0328 Salvia bowleyana HOM05D004631 ORTHO05D005223 5.8e-19 98.2 153 40.5
Ciclev10003548m.g Citrus clementina HOM05D004631 ORTHO05D005223 1.3e-18 97.1 116 46.6
Zm00001eb079230 Zea mays HOM05D004631 ORTHO05D005223 2.9e-18 95.9 170 40.0
Eucgr.L03061 Eucalyptus grandis HOM05D004631 ORTHO05D005223 6.4e-18 94.7 74 63.5
Mapoly0078s0021 Marchantia polymorpha HOM05D004631 ORTHO05D005223 8.4e-18 94.4 129 42.6
Nitab4.5_0001863g0070 Nicotiana tabacum HOM05D004631 ORTHO05D005223 1.2e-16 90.5 124 44.4
Medtr4g103350 Medicago truncatula HOM05D004631 ORTHO05D005223 2.8e-13 79.3 111 43.2
SMO199G0125 Selaginella moellendorffii HOM05D004631 ORTHO05D005223 4.8e-13 78.6 118 35.6
Pp3c7_140 Physcomitrium patens HOM05D004631 ORTHO05D005223 1.8e-12 76.6 137 35.0
BcaC04g23906 Brassica carinata HOM05D004631 ORTHO05D005223 3.1e-12 75.9 85 50.6
Potri.001G337533 Populus trichocarpa HOM05D004631 ORTHO05D005223 2.6e-11 72.8 94 47.9
Nitab4.5_0008718g0050 Nicotiana tabacum HOM05D004631 ORTHO05D005223 4.5e-11 72.0 123 41.5
Actinidia35792 Actinidia chinensis HOM05D004631 ORTHO05D005223 2.9e-10 69.3 94 45.7
A09p03370 Brassica napus HOM05D004631 ORTHO05D005223 1.0e-07 60.8 45 60.0
BraA09t35975Z Brassica rapa HOM05D004631 ORTHO05D005223 1.0e-07 60.8 45 60.0
BraA09t35976Z Brassica rapa HOM05D004631 ORTHO05D005223 1.0e-07 60.8 45 60.0
HPP92_027613 Vanilla planifolia HOM05D004631 ORTHO05D005223 1.0e-07 60.8 42 64.3


User provided reference genes

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