Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g09122 Fragaria vesca HOM05D000109 ORTHO05D010545 1.5e-145 519.6 282 100.0
FAN15G2734 Fragaria x ananassa HOM05D000109 ORTHO05D000210 8.7e-13 78.6 40 87.5
RcHm_v2.0_Chr6g0269601 Rosa chinensis HOM05D000109 ORTHO05D000210 1.1e-12 78.2 39 89.7
FvH4_2g11260 Fragaria vesca HOM05D000109 ORTHO05D000210 5.7e-12 75.9 37 91.9
FvH4_7g28010 Fragaria vesca HOM05D000109 ORTHO05D000210 1.6e-11 74.3 40 77.5
RcHm_v2.0_Chr1g0374941 Rosa chinensis HOM05D000109 ORTHO05D018247 3.7e-11 73.2 39 79.5
Prupe.1G399500 Prunus persica HOM05D000109 ORTHO05D000210 3.1e-10 70.1 39 79.5
MD15G1045900 Malus domestica HOM05D000109 ORTHO05D000210 6.9e-10 68.9 39 76.9
Haze_18347 Corylus avellana HOM05D000109 ORTHO05D000210 9.0e-10 68.6 39 74.4
MD08G1048900 Malus domestica HOM05D000109 ORTHO05D000210 9.0e-10 68.6 39 74.4
Ciclev10010598m.g Citrus clementina HOM05D000109 ORTHO05D000210 1.5e-09 67.8 39 66.7
QL09p041575 Quercus lobata HOM05D000109 ORTHO05D000210 1.5e-09 67.8 39 74.4
Prupe.1G399600 Prunus persica HOM05D000109 ORTHO05D000210 3.4e-09 66.6 39 74.4
Prupe.1G400400 Prunus persica HOM05D000109 ORTHO05D000210 3.4e-09 66.6 39 74.4
RcHm_v2.0_Chr3g0492581 Rosa chinensis HOM05D000109 ORTHO05D000210 3.4e-09 66.6 40 67.5
Haze_18354 Corylus avellana HOM05D000109 ORTHO05D000210 4.5e-09 66.2 39 71.8
Cfa017849 Carpinus fangiana HOM05D000109 ORTHO05D000210 5.9e-09 65.9 39 71.8
CiPaw.15G064700 Carya illinoinensis HOM05D000109 ORTHO05D000210 5.9e-09 65.9 40 67.5
Haze_18361 Corylus avellana HOM05D000109 ORTHO05D000210 5.9e-09 65.9 38 76.3
Ciclev10010696m.g Citrus clementina HOM05D000109 ORTHO05D000210 7.6e-09 65.5 39 64.1
FvH4_2g37140 Fragaria vesca HOM05D000109 ORTHO05D000210 7.6e-09 65.5 40 70.0
FAN20G1203 Fragaria x ananassa HOM05D000109 ORTHO05D000210 7.6e-09 65.5 40 70.0
Atru.chr7.2607 Acer truncatum HOM05D000109 ORTHO05D000210 1.0e-08 65.1 40 65.0
Ciclev10007370m.g Citrus clementina HOM05D000109 ORTHO05D000210 1.0e-08 65.1 39 61.5
Manes.16G133600 Manihot esculenta HOM05D000109 ORTHO05D000210 1.0e-08 65.1 40 67.5
Cfa017848 Carpinus fangiana HOM05D000109 ORTHO05D000210 1.3e-08 64.7 39 69.2
CiPaw.15G064900 Carya illinoinensis HOM05D000109 ORTHO05D000210 1.3e-08 64.7 39 69.2
Cfa017893 Carpinus fangiana HOM05D000109 ORTHO05D000210 1.7e-08 64.3 39 71.8
CiPaw.16G049500 Carya illinoinensis HOM05D000109 ORTHO05D000210 2.2e-08 63.9 37 75.7
CiPaw.16G049600 Carya illinoinensis HOM05D000109 ORTHO05D000210 2.2e-08 63.9 37 75.7
Ciclev10007424m.g Citrus clementina HOM05D000109 ORTHO05D000210 2.2e-08 63.9 39 61.5
FvH4_2g37150 Fragaria vesca HOM05D000109 ORTHO05D000210 2.9e-08 63.5 40 65.0
Ciclev10010706m.g Citrus clementina HOM05D000109 ORTHO05D000210 6.5e-08 62.4 39 59.0
Prupe.1G400000 Prunus persica HOM05D000109 ORTHO05D000210 6.5e-08 62.4 40 62.5
A04p19050 Brassica napus HOM05D000109 ORTHO05D000210 8.4e-08 62.0 39 64.1
BraA04t17504Z Brassica rapa HOM05D000109 ORTHO05D000210 8.4e-08 62.0 39 64.1
CiPaw.15G064800 Carya illinoinensis HOM05D000109 ORTHO05D000210 1.1e-07 61.6 39 66.7
Dinv06100 Davidia involucrata HOM05D000109 ORTHO05D000210 1.1e-07 61.6 40 67.5
FAN27G1526 Fragaria x ananassa HOM05D000109 ORTHO05D000210 1.1e-07 61.6 40 62.5
FAN27G3174 Fragaria x ananassa HOM05D000109 ORTHO05D000210 1.1e-07 61.6 37 70.3
MD08G1049000 Malus domestica HOM05D000109 ORTHO05D000210 1.1e-07 61.6 39 69.2
Potri.018G013000 Populus trichocarpa HOM05D000109 ORTHO05D000210 1.1e-07 61.6 38 63.2
RcHm_v2.0_Chr6g0269641 Rosa chinensis HOM05D000109 ORTHO05D000210 1.4e-07 61.2 38 71.1
RcHm_v2.0_Chr6g0269881 Rosa chinensis HOM05D000109 ORTHO05D000210 1.4e-07 61.2 38 68.4
PGSC0003DMG400009186 Solanum tuberosum HOM05D000109 ORTHO05D000210 1.4e-07 61.2 38 63.2
CANSAT25G3235 Cannabis sativa HOM05D000109 ORTHO05D000210 1.9e-07 60.8 39 64.1
Lj5A723T48 Lonicera japonica HOM05D000109 ORTHO05D000210 1.9e-07 60.8 40 60.0
Lj5C720T4 Lonicera japonica HOM05D000109 ORTHO05D000210 1.9e-07 60.8 40 60.0
Prupe.1G399800 Prunus persica HOM05D000109 ORTHO05D000210 1.9e-07 60.8 38 65.8
AT2G24710 Arabidopsis thaliana HOM05D000109 ORTHO05D000210 2.5e-07 60.5 39 61.5
Lj5C740T7 Lonicera japonica HOM05D000109 ORTHO05D000210 2.5e-07 60.5 40 62.5
Aa31LG3G15980 Aethionema arabicum HOM05D000109 ORTHO05D000210 3.2e-07 60.1 39 59.0
AL4G15432 Arabidopsis lyrata HOM05D000109 ORTHO05D000210 3.2e-07 60.1 39 59.0
FvH4_2g11340 Fragaria vesca HOM05D000109 ORTHO05D000210 3.2e-07 60.1 38 65.8
FAN15G1919 Fragaria x ananassa HOM05D000109 ORTHO05D000210 3.2e-07 60.1 38 65.8
FAN24G2917 Fragaria x ananassa HOM05D000109 ORTHO05D000210 3.2e-07 60.1 38 65.8
Lj5A717T20 Lonicera japonica HOM05D000109 ORTHO05D000210 3.2e-07 60.1 40 60.0
Aa31sc235G30 Aethionema arabicum HOM05D000109 ORTHO05D000210 4.2e-07 59.7 39 61.5
Manes.11G006700 Manihot esculenta HOM05D000109 ORTHO05D000210 4.2e-07 59.7 39 59.0
RcHm_v2.0_Chr5g0020871 Rosa chinensis HOM05D000109 ORTHO05D000210 4.2e-07 59.7 40 60.0
CiPaw.15G065100 Carya illinoinensis HOM05D000109 ORTHO05D000210 5.5e-07 59.3 39 61.5
COL.COLO4_19009 Corchorus olitorius HOM05D000109 ORTHO05D000210 5.5e-07 59.3 39 61.5
COL.COLO4_19940 Corchorus olitorius HOM05D000109 ORTHO05D000210 5.5e-07 59.3 39 61.5
Haze_18356 Corylus avellana HOM05D000109 ORTHO05D000210 5.5e-07 59.3 36 69.4
Duzib168G0399 Durio zibethinus HOM05D000109 ORTHO05D000210 5.5e-07 59.3 38 63.2
FvH4_2g11331 Fragaria vesca HOM05D000109 ORTHO05D000210 5.5e-07 59.3 39 61.5
FAN24G2248 Fragaria x ananassa HOM05D000109 ORTHO05D000210 5.5e-07 59.3 39 61.5
Lj5A734G21 Lonicera japonica HOM05D000109 ORTHO05D000210 5.5e-07 59.3 40 57.5
Lj5C723T5 Lonicera japonica HOM05D000109 ORTHO05D000210 5.5e-07 59.3 40 57.5
Lj5C726G5 Lonicera japonica HOM05D000109 ORTHO05D000210 5.5e-07 59.3 40 57.5
Lj5C739G2 Lonicera japonica HOM05D000109 ORTHO05D000210 5.5e-07 59.3 40 60.0
QL02p074242 Quercus lobata HOM05D000109 ORTHO05D000210 5.5e-07 59.3 40 65.0
vmacro18691 Vaccinium macrocarpon HOM05D000109 ORTHO05D000210 5.5e-07 59.3 37 64.9
FvH4_2g11310 Fragaria vesca HOM05D000109 ORTHO05D000210 7.2e-07 58.9 38 68.4
FvH4_2g31980 Fragaria vesca HOM05D000109 ORTHO05D000210 7.2e-07 58.9 38 63.2
FAN15G1999 Fragaria x ananassa HOM05D000109 ORTHO05D000210 7.2e-07 58.9 38 68.4
FAN24G2875 Fragaria x ananassa HOM05D000109 ORTHO05D000210 7.2e-07 58.9 38 68.4
Lj5C741T2 Lonicera japonica HOM05D000109 ORTHO05D000210 7.2e-07 58.9 40 60.0
Nn8g40354 Nelumbo nucifera HOM05D000109 ORTHO05D000210 7.2e-07 58.9 38 63.2
PGSC0003DMG400026312 Solanum tuberosum HOM05D000109 ORTHO05D000210 7.2e-07 58.9 40 60.0
TAR625G0917 Trochodendron aralioides HOM05D000109 ORTHO05D000210 7.2e-07 58.9 38 65.8
BolC4t26984H Brassica oleracea HOM05D000109 ORTHO05D000210 9.3e-07 58.5 39 61.5
Eucgr.L03706 Eucalyptus grandis HOM05D000109 ORTHO05D000210 9.3e-07 58.5 39 59.0
Lj5A725G36 Lonicera japonica HOM05D000109 ORTHO05D000210 9.3e-07 58.5 40 57.5
Lj5C723T4 Lonicera japonica HOM05D000109 ORTHO05D000210 9.3e-07 58.5 40 60.0
Lj5C727G2 Lonicera japonica HOM05D000109 ORTHO05D000210 9.3e-07 58.5 40 57.5
MD14G1064700 Malus domestica HOM05D000109 ORTHO05D000210 9.3e-07 58.5 40 55.0
Thecc.09G009800 Theobroma cacao HOM05D000109 ORTHO05D000210 9.3e-07 58.5 39 61.5
Thecc.09G010000 Theobroma cacao HOM05D000109 ORTHO05D000210 9.3e-07 58.5 39 61.5
ATR0580G375 Amborella trichopoda HOM05D000109 ORTHO05D000210 1.2e-06 58.2 73 38.4
CARHR117080 Cardamine hirsuta HOM05D000109 ORTHO05D000210 1.2e-06 58.2 39 56.4
Dinv19803 Davidia involucrata HOM05D000109 ORTHO05D000210 1.2e-06 58.2 40 60.0
Dinv20254 Davidia involucrata HOM05D000109 ORTHO05D000210 1.2e-06 58.2 39 61.5
Eucgr.C02004 Eucalyptus grandis HOM05D000109 ORTHO05D000210 1.2e-06 58.2 37 64.9
Eucgr.L00726 Eucalyptus grandis HOM05D000109 ORTHO05D000210 1.2e-06 58.2 37 64.9
Lj5A720T29 Lonicera japonica HOM05D000109 ORTHO05D000210 1.2e-06 58.2 39 59.0
Lj7C738G14 Lonicera japonica HOM05D000109 ORTHO05D000210 1.2e-06 58.2 39 61.5
Nn2g12611 Nelumbo nucifera HOM05D000109 ORTHO05D000210 1.2e-06 58.2 38 65.8
BcaC08g47329 Brassica carinata HOM05D000109 ORTHO05D000210 1.6e-06 57.8 39 59.0
C06p49710 Brassica napus HOM05D000109 ORTHO05D000210 1.6e-06 57.8 39 59.0
BolC6t40011H Brassica oleracea HOM05D000109 ORTHO05D000210 1.6e-06 57.8 39 59.0
CANSAT25G0510 Cannabis sativa HOM05D000109 ORTHO05D000210 1.6e-06 57.8 40 57.5
Haze_18345 Corylus avellana HOM05D000109 ORTHO05D000210 1.6e-06 57.8 46 54.3
Eucgr.L00861 Eucalyptus grandis HOM05D000109 ORTHO05D000210 1.6e-06 57.8 37 64.9
Lj5A732T31 Lonicera japonica HOM05D000109 ORTHO05D000210 1.6e-06 57.8 40 55.0
Lj5A739G43 Lonicera japonica HOM05D000109 ORTHO05D000210 1.6e-06 57.8 40 55.0
Nitab4.5_0001691g0060 Nicotiana tabacum HOM05D000109 ORTHO05D000210 1.6e-06 57.8 38 57.9
Nitab4.5_0002885g0110 Nicotiana tabacum HOM05D000109 ORTHO05D000210 1.6e-06 57.8 38 57.9
Potri.018G012700 Populus trichocarpa HOM05D000109 ORTHO05D000210 1.6e-06 57.8 38 60.5
Prupe.1G399900 Prunus persica HOM05D000109 ORTHO05D000210 1.6e-06 57.8 40 57.5
RcHm_v2.0_Chr5g0040011 Rosa chinensis HOM05D000109 ORTHO05D000210 1.6e-06 57.8 40 57.5
CSS0046581 Camellia sinensis var. sinensis HOM05D000109 ORTHO05D000210 2.1e-06 57.4 39 59.0
Eucgr.C01608 Eucalyptus grandis HOM05D000109 ORTHO05D000210 2.1e-06 57.4 36 63.9
Eucgr.C01870 Eucalyptus grandis HOM05D000109 ORTHO05D000210 2.1e-06 57.4 37 64.9
Eucgr.C01873 Eucalyptus grandis HOM05D000109 ORTHO05D000210 2.1e-06 57.4 36 63.9
FvH4_1g23730 Fragaria vesca HOM05D000109 ORTHO05D000210 2.1e-06 57.4 41 58.5
Lj7C743T12 Lonicera japonica HOM05D000109 ORTHO05D000210 2.1e-06 57.4 39 61.5
Potri.018G012100 Populus trichocarpa HOM05D000109 ORTHO05D000210 2.1e-06 57.4 38 55.3
RcHm_v2.0_Chr6g0304661 Rosa chinensis HOM05D000109 ORTHO05D000210 2.1e-06 57.4 40 57.5
Thecc.09G010300 Theobroma cacao HOM05D000109 ORTHO05D000210 2.1e-06 57.4 40 52.5
TAR625G0263 Trochodendron aralioides HOM05D000109 ORTHO05D000210 2.1e-06 57.4 38 63.2
Lj5A721G18 Lonicera japonica HOM05D000109 ORTHO05D000210 2.7e-06 57.0 40 57.5
Prupe.1G399700 Prunus persica HOM05D000109 ORTHO05D000210 2.7e-06 57.0 37 62.2
Solyc08g006500.4 Solanum lycopersicum HOM05D000109 ORTHO05D000210 2.7e-06 57.0 40 57.5
Sopen08g002460 Solanum pennellii HOM05D000109 ORTHO05D000210 2.7e-06 57.0 40 57.5
arahy.Tifrunner.gnm1.ann1.DAV6SS Arachis hypogaea HOM05D000109 ORTHO05D000210 3.5e-06 56.6 39 59.0
BcaB06g27996 Brassica carinata HOM05D000109 ORTHO05D000210 3.5e-06 56.6 39 61.5
CAN.G790.27 Capsicum annuum HOM05D000109 ORTHO05D000210 3.5e-06 56.6 38 57.9
Dinv03979 Davidia involucrata HOM05D000109 ORTHO05D000210 3.5e-06 56.6 39 61.5
Eucgr.C02003 Eucalyptus grandis HOM05D000109 ORTHO05D000210 3.5e-06 56.6 36 66.7
FAN24G0664 Fragaria x ananassa HOM05D000109 ORTHO05D000210 3.5e-06 56.6 38 60.5
Lj5C740G13 Lonicera japonica HOM05D000109 ORTHO05D000210 3.5e-06 56.6 40 52.5
Potri.006G268700 Populus trichocarpa HOM05D000109 ORTHO05D000210 3.5e-06 56.6 38 57.9
Potri.006G268900 Populus trichocarpa HOM05D000109 ORTHO05D000210 3.5e-06 56.6 38 57.9
Potri.006G270400 Populus trichocarpa HOM05D000109 ORTHO05D000210 3.5e-06 56.6 38 57.9
Potri.018G012900 Populus trichocarpa HOM05D000109 ORTHO05D000210 3.5e-06 56.6 38 55.3
Sc06g0000240 Simmondsia chinensis HOM05D000109 ORTHO05D000210 3.5e-06 56.6 38 55.3
Sc06g0000250 Simmondsia chinensis HOM05D000109 ORTHO05D000210 3.5e-06 56.6 38 52.6
GSVIVG01029195001 Vitis vinifera HOM05D000109 ORTHO05D000210 3.5e-06 56.6 38 60.5
GSVIVG01033142001 Vitis vinifera HOM05D000109 ORTHO05D000210 3.5e-06 56.6 38 57.9
Carub.0004s0419 Capsella rubella HOM05D000109 ORTHO05D000210 4.6e-06 56.2 39 59.0
FvH4_3g22810 Fragaria vesca HOM05D000109 ORTHO05D000210 4.6e-06 56.2 40 57.5
FAN06G4954 Fragaria x ananassa HOM05D000109 ORTHO05D000210 4.6e-06 56.2 39 56.4
FAN15G0779 Fragaria x ananassa HOM05D000109 ORTHO05D000210 4.6e-06 56.2 36 61.1
MD08G1048700 Malus domestica HOM05D000109 ORTHO05D000210 4.6e-06 56.2 38 60.5
RcHm_v2.0_Chr6g0269871 Rosa chinensis HOM05D000109 ORTHO05D000210 4.6e-06 56.2 38 57.9
vmacro18763 Vaccinium macrocarpon HOM05D000109 ORTHO05D000210 4.6e-06 56.2 38 60.5
ATR0580G252 Amborella trichopoda HOM05D000109 ORTHO05D000210 6.1e-06 55.8 42 54.8
arahy.Tifrunner.gnm1.ann1.X4TXS8 Arachis hypogaea HOM05D000109 ORTHO05D000210 6.1e-06 55.8 37 62.2
A07p41300 Brassica napus HOM05D000109 ORTHO05D000210 6.1e-06 55.8 39 56.4
BraA07t31663Z Brassica rapa HOM05D000109 ORTHO05D000210 6.1e-06 55.8 39 56.4
FvH4_2g37130 Fragaria vesca HOM05D000109 ORTHO05D000210 6.1e-06 55.8 84 36.9
FAN25G1829 Fragaria x ananassa HOM05D000109 ORTHO05D000210 6.1e-06 55.8 40 55.0
FAN25G3395 Fragaria x ananassa HOM05D000109 ORTHO05D000210 6.1e-06 55.8 40 55.0
Hma1.2p1_0184F.1_g081130 Hydrangea macrophylla HOM05D000109 ORTHO05D000210 6.1e-06 55.8 39 61.5
Oeu014134.1 Olea europaea HOM05D000109 ORTHO05D000210 6.1e-06 55.8 40 55.0
Oeu014140.1 Olea europaea HOM05D000109 ORTHO05D000210 6.1e-06 55.8 40 55.0
Oeu014153.2 Olea europaea HOM05D000109 ORTHO05D000210 6.1e-06 55.8 40 55.0
Peaxi162Scf00038g02452 Petunia axillaris HOM05D000109 ORTHO05D000210 6.1e-06 55.8 38 57.9
RcHm_v2.0_Chr1g0345081 Rosa chinensis HOM05D000109 ORTHO05D000210 6.1e-06 55.8 40 57.5
RcHm_v2.0_Chr6g0269951 Rosa chinensis HOM05D000109 ORTHO05D000210 6.1e-06 55.8 40 57.5
Sopen03g024800 Solanum pennellii HOM05D000109 ORTHO05D010545 6.1e-06 55.8 41 56.1
Sopen06g033210 Solanum pennellii HOM05D000002 ORTHO05D010545 6.1e-06 55.8 38 57.9
Sopen10g019350 Solanum pennellii HOM05D000109 ORTHO05D010545 6.1e-06 55.8 38 57.9
TAR624G0877 Trochodendron aralioides HOM05D000109 ORTHO05D000210 6.1e-06 55.8 38 60.5
Aa31sc350G30 Aethionema arabicum HOM05D000109 ORTHO05D000210 7.9e-06 55.5 39 53.8
Carub.0002s0709 Capsella rubella HOM05D000109 ORTHO05D000210 7.9e-06 55.5 39 53.8
COL.COLO4_19010 Corchorus olitorius HOM05D000109 ORTHO05D000210 7.9e-06 55.5 39 59.0
FvH4_7g09130 Fragaria vesca HOM05D000109 ORTHO05D000210 7.9e-06 55.5 38 57.9
MD08G1048100 Malus domestica HOM05D000109 ORTHO05D000210 7.9e-06 55.5 38 60.5
MD15G1046000 Malus domestica HOM05D000109 ORTHO05D000210 7.9e-06 55.5 38 60.5
Peaxi162Scf00094g01119 Petunia axillaris HOM05D000109 ORTHO05D000210 7.9e-06 55.5 39 56.4
GSVIVG01033156001 Vitis vinifera HOM05D000109 ORTHO05D000210 7.9e-06 55.5 38 57.9


User provided reference genes

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