Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g09041 Fragaria vesca HOM05D000357 ORTHO05D196366 1.7e-24 115.9 97 100.0
FAN02G1082 Fragaria x ananassa HOM05D000357 ORTHO05D000242 1.5e-17 92.8 95 74.7
FAN05G0402 Fragaria x ananassa HOM05D000357 ORTHO05D000242 2.9e-16 88.6 99 72.7
FvH4_4g02120 Fragaria vesca HOM05D000357 ORTHO05D000242 3.8e-16 88.2 98 72.4
FAN05G2092 Fragaria x ananassa HOM05D000357 ORTHO05D000242 1.1e-15 86.7 99 71.7
RcHm_v2.0_Chr3g0472891 Rosa chinensis HOM05D000357 ORTHO05D000242 5.5e-15 84.3 99 57.6
FAN09G2543 Fragaria x ananassa HOM05D000357 ORTHO05D000242 1.2e-14 83.2 97 78.4
FvH4_6g18400 Fragaria vesca HOM05D000357 ORTHO05D000242 1.5e-12 76.3 96 74.0
FAN14G4660 Fragaria x ananassa HOM05D000357 ORTHO05D000242 1.5e-12 76.3 96 74.0
Phvul.001G188800 Phaseolus vulgaris HOM05D000357 ORTHO05D000242 2.9e-08 62.0 31 87.1
TWI74G0271 Tripterygium wilfordii HOM05D000357 ORTHO05D000242 3.8e-08 61.6 31 83.9
TWI53G1129 Tripterygium wilfordii HOM05D000357 ORTHO05D000242 5.0e-08 61.2 31 83.9
CiPaw.09G011800 Carya illinoinensis HOM05D000357 ORTHO05D000242 6.5e-08 60.8 31 83.9
Haze_19586 Corylus avellana HOM05D000357 ORTHO05D000242 6.5e-08 60.8 31 83.9
Duzib093G0258 Durio zibethinus HOM05D000357 ORTHO05D000242 6.5e-08 60.8 96 40.6
Glyma.03G194000 Glycine max HOM05D000357 ORTHO05D000242 6.5e-08 60.8 31 83.9
Glyma.19G193800 Glycine max HOM05D000357 ORTHO05D000242 6.5e-08 60.8 31 83.9
Prupe.7G113400 Prunus persica HOM05D000357 ORTHO05D000242 6.5e-08 60.8 31 87.1
Cpa.g.sc5.42 Carica papaya HOM05D000357 ORTHO05D000242 8.5e-08 60.5 31 83.9
Cfa016586 Carpinus fangiana HOM05D000357 ORTHO05D000242 8.5e-08 60.5 31 83.9
Thecc.05G086300 Theobroma cacao HOM05D000357 ORTHO05D000242 8.5e-08 60.5 31 83.9
ClCG04G009970 Citrullus lanatus HOM05D000357 ORTHO05D000242 1.1e-07 60.1 31 83.9
COL.COLO4_29775 Corchorus olitorius HOM05D000357 ORTHO05D000242 1.1e-07 60.1 31 87.1
MELO3C024538.2 Cucumis melo HOM05D000357 ORTHO05D000242 1.1e-07 60.1 31 83.9
CsaV3_6G040620 Cucumis sativus L. HOM05D000357 ORTHO05D000242 1.1e-07 60.1 31 83.9
Sed0004982 Sechium edule HOM05D000357 ORTHO05D000242 1.1e-07 60.1 31 83.9
TWI77G0206 Tripterygium wilfordii HOM05D000357 ORTHO05D000242 1.1e-07 60.1 31 80.6
QL07p039417 Quercus lobata HOM05D000357 ORTHO05D000242 1.4e-07 59.7 31 80.6
Ca_08992_v3 Cicer arietinum L. HOM05D000357 ORTHO05D000242 1.9e-07 59.3 31 83.9
VMungo1383G3566 Vigna mungo HOM05D000357 ORTHO05D000242 1.9e-07 59.3 31 83.9
CANSAT80G2605 Cannabis sativa HOM05D000357 ORTHO05D000242 2.5e-07 58.9 31 80.6
Gohir.A09G138500 Gossypium hirsutum HOM05D000357 ORTHO05D000242 2.5e-07 58.9 31 80.6
Gohir.D09G136100 Gossypium hirsutum HOM05D000357 ORTHO05D000242 2.5e-07 58.9 31 80.6
Gorai.006G156200 Gossypium raimondii HOM05D000357 ORTHO05D000242 2.5e-07 58.9 31 80.6
MD12G1023200 Malus domestica HOM05D000357 ORTHO05D000242 2.5e-07 58.9 31 80.6
MD14G1020200 Malus domestica HOM05D000357 ORTHO05D000242 2.5e-07 58.9 31 80.6
Gohir.A01G207300 Gossypium hirsutum HOM05D000357 ORTHO05D000242 4.2e-07 58.2 31 80.6
Gohir.D01G196600 Gossypium hirsutum HOM05D000357 ORTHO05D000242 4.2e-07 58.2 31 80.6
Gorai.002G240900 Gossypium raimondii HOM05D000357 ORTHO05D000242 4.2e-07 58.2 31 80.6
TAR623G1789 Trochodendron aralioides HOM05D000357 ORTHO05D000242 4.2e-07 58.2 31 80.6
Manes.08G023800 Manihot esculenta HOM05D000357 ORTHO05D000242 5.5e-07 57.8 31 83.9
Manes.09G056602 Manihot esculenta HOM05D000357 ORTHO05D000242 5.5e-07 57.8 31 80.6
Thhalv10017322m.g Eutrema salsugineum HOM05D000357 ORTHO05D000242 7.2e-07 57.4 31 80.6
Gohir.A04G064000 Gossypium hirsutum HOM05D000357 ORTHO05D000242 7.2e-07 57.4 31 80.6
Gorai.009G404700 Gossypium raimondii HOM05D000357 ORTHO05D000242 7.2e-07 57.4 31 80.6
Lalb_Chr20g0112011 Lupinus albus HOM05D000357 ORTHO05D000242 7.2e-07 57.4 32 84.4
Duzib128G0906 Durio zibethinus HOM05D000357 ORTHO05D000242 9.3e-07 57.0 31 77.4
CDE08G0900 Ceratophyllum demersum HOM05D000357 ORTHO05D000242 1.2e-06 56.6 31 77.4
Atru.chr8.1571 Acer truncatum HOM05D000357 ORTHO05D000242 1.6e-06 56.2 31 80.6
Gohir.D04G101400 Gossypium hirsutum HOM05D000357 ORTHO05D000242 1.6e-06 56.2 31 77.4
Medtr7g104320 Medicago truncatula HOM05D000357 ORTHO05D000242 1.6e-06 56.2 31 77.4
TPR.G19543 Trifolium pratense HOM05D000357 ORTHO05D014416 1.6e-06 56.2 31 77.4
VMungo0720G0872 Vigna mungo HOM05D000357 ORTHO05D000242 1.6e-06 56.2 31 77.4
Aqoxy5G00392 Aquilegia oxysepala HOM05D000357 ORTHO05D000242 2.1e-06 55.8 32 81.2
CARHR130610 Cardamine hirsuta HOM05D000357 ORTHO05D000242 2.1e-06 55.8 31 77.4
Hma1.2p1_0232F.1_g097760 Hydrangea macrophylla HOM05D000357 ORTHO05D000242 2.1e-06 55.8 31 77.4
Lalb_Chr02g0155011 Lupinus albus HOM05D000357 ORTHO05D000242 2.7e-06 55.5 31 74.2
MBI17_g08134_MAGBIO Magnolia biondii HOM05D000357 ORTHO05D000242 2.7e-06 55.5 31 77.4
BcaB01g00339 Brassica carinata HOM05D000357 ORTHO05D000242 3.6e-06 55.1 31 77.4
BcaB02g07814 Brassica carinata HOM05D000357 ORTHO05D000242 3.6e-06 55.1 31 77.4
BcaB02g08551 Brassica carinata HOM05D000357 ORTHO05D000242 3.6e-06 55.1 31 77.4
BcaC07g39647 Brassica carinata HOM05D000357 ORTHO05D000242 3.6e-06 55.1 31 77.4
BcaC08g44596 Brassica carinata HOM05D000357 ORTHO05D000242 3.6e-06 55.1 31 77.4
A04p06670 Brassica napus HOM05D000357 ORTHO05D000242 3.6e-06 55.1 31 77.4
A07p21200 Brassica napus HOM05D000357 ORTHO05D000242 3.6e-06 55.1 31 77.4
A09p45870 Brassica napus HOM05D000357 ORTHO05D000242 3.6e-06 55.1 31 77.4
C06p20690 Brassica napus HOM05D000357 ORTHO05D000242 3.6e-06 55.1 31 77.4
C08p28100 Brassica napus HOM05D000357 ORTHO05D000242 3.6e-06 55.1 31 77.4
BolC6t37252H Brassica oleracea HOM05D000357 ORTHO05D000242 3.6e-06 55.1 31 77.4
BolC8t50422H Brassica oleracea HOM05D000357 ORTHO05D000242 3.6e-06 55.1 31 77.4
BraA04t16371Z Brassica rapa HOM05D000357 ORTHO05D000242 3.6e-06 55.1 31 77.4
BraA07t29807Z Brassica rapa HOM05D000357 ORTHO05D000242 3.6e-06 55.1 31 77.4
BraA09t40049Z Brassica rapa HOM05D000357 ORTHO05D000242 3.6e-06 55.1 31 77.4
Ciclev10012937m.g Citrus clementina HOM05D000357 ORTHO05D000242 3.6e-06 55.1 31 80.6
Thhalv10010758m.g Eutrema salsugineum HOM05D000357 ORTHO05D000242 3.6e-06 55.1 31 77.4
Oeu014903.1 Olea europaea HOM05D000357 ORTHO05D000242 3.6e-06 55.1 31 77.4
Sp5g09530 Schrenkiella parvula HOM05D000357 ORTHO05D000242 3.6e-06 55.1 31 77.4
Aa31LG5G21470 Aethionema arabicum HOM05D000357 ORTHO05D000242 4.6e-06 54.7 31 77.4
AL4G32450 Arabidopsis lyrata HOM05D000357 ORTHO05D000242 4.6e-06 54.7 31 74.2
AT2G36320 Arabidopsis thaliana HOM05D000357 ORTHO05D000242 4.6e-06 54.7 31 74.2
Phvul.007G228900 Phaseolus vulgaris HOM05D000357 ORTHO05D000242 4.6e-06 54.7 31 74.2
Psat3g034360 Pisum sativum HOM05D000357 ORTHO05D000242 4.6e-06 54.7 30 76.7
arahy.Tifrunner.gnm1.ann1.J961PB Arachis hypogaea HOM05D000357 ORTHO05D000242 6.1e-06 54.3 31 74.2
arahy.Tifrunner.gnm1.ann1.YL5FLY Arachis hypogaea HOM05D000357 ORTHO05D000242 6.1e-06 54.3 31 74.2
CDE02G1496 Ceratophyllum demersum HOM05D000357 ORTHO05D000242 6.1e-06 54.3 31 74.2
CDE04G2776 Ceratophyllum demersum HOM05D002333 ORTHO05D002485 6.1e-06 54.3 31 74.2
DCAR_013379 Daucus carota HOM05D000357 ORTHO05D000242 6.1e-06 54.3 30 76.7
Duzib106G0793 Durio zibethinus HOM05D000357 ORTHO05D000242 6.1e-06 54.3 31 74.2
Glyma.10G070900 Glycine max HOM05D000357 ORTHO05D000242 6.1e-06 54.3 31 74.2
Lj5g0019420 Lotus japonicus HOM05D000357 ORTHO05D000242 6.1e-06 54.3 31 74.2
THA.LOC104827514 Tarenaya hassleriana HOM05D000357 ORTHO05D000242 6.1e-06 54.3 31 74.2
BcaC02g09212 Brassica carinata HOM05D000357 ORTHO05D000242 7.9e-06 53.9 31 74.2
C04p40100 Brassica napus HOM05D000357 ORTHO05D000242 7.9e-06 53.9 31 74.2
BolC4t25586H Brassica oleracea HOM05D000357 ORTHO05D000242 7.9e-06 53.9 31 74.2
Ca_22049_v3 Cicer arietinum L. HOM05D000357 ORTHO05D000242 7.9e-06 53.9 31 77.4
TPR.G35429 Trifolium pratense HOM05D000357 ORTHO05D000242 7.9e-06 53.9 31 77.4


User provided reference genes

Program Settings