Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g08780 Fragaria vesca HOM05D006766 ORTHO05D008534 4.8e-43 177.6 98 100.0
FAN27G0567 Fragaria x ananassa HOM05D006766 ORTHO05D008534 1.7e-40 169.1 94 97.9
FAN24G2015 Fragaria x ananassa HOM05D006766 ORTHO05D008534 8.5e-40 166.8 93 98.9
FAN15G0619 Fragaria x ananassa HOM05D006766 ORTHO05D008534 1.1e-39 166.4 96 94.8
FAN20G1934 Fragaria x ananassa HOM05D004333 ORTHO05D005363 3.2e-39 164.9 96 93.8
RcHm_v2.0_Chr6g0264231 Rosa chinensis HOM05D006766 ORTHO05D008534 1.6e-38 162.5 96 91.7
Prupe.8G097200 Prunus persica HOM05D006766 ORTHO05D008534 6.5e-32 140.6 96 80.2
RcHm_v2.0_Chr5g0010131 Rosa chinensis HOM05D006766 ORTHO05D008534 1.5e-28 129.4 93 74.2
MD10G1076400 Malus domestica HOM05D006766 ORTHO05D008534 7.4e-28 127.1 96 74.0
MD10G1031700 Malus domestica HOM05D006766 ORTHO05D008534 1.8e-26 122.5 93 74.2
COL.COLO4_25930 Corchorus olitorius HOM05D006766 ORTHO05D008534 3.8e-24 114.8 97 64.9
Thecc.02G085300 Theobroma cacao HOM05D006766 ORTHO05D008534 3.8e-24 114.8 97 67.0
Sp7g36570 Schrenkiella parvula HOM05D006766 ORTHO05D008534 2.5e-23 112.1 96 66.7
Carub.0007s0121 Capsella rubella HOM05D006766 ORTHO05D008534 3.2e-23 111.7 96 64.6
AL7G11290 Arabidopsis lyrata HOM05D006766 ORTHO05D008534 4.2e-23 111.3 96 65.6
CARHR247400 Cardamine hirsuta HOM05D006766 ORTHO05D008534 9.4e-23 110.2 96 63.5
AT4G39300 Arabidopsis thaliana HOM05D006766 ORTHO05D008534 2.7e-22 108.6 96 64.6
Duzib248G0712 Durio zibethinus HOM05D006766 ORTHO05D008534 8.0e-22 107.1 93 65.6
TWI31G1395 Tripterygium wilfordii HOM05D006766 ORTHO05D008534 1.0e-21 106.7 97 63.9
Cfa005004 Carpinus fangiana HOM05D006766 ORTHO05D008534 1.4e-21 106.3 95 65.3
GSVIVG01031965001 Vitis vinifera HOM05D006766 ORTHO05D008534 1.4e-21 106.3 96 61.5
Cpa.g.sc62.150 Carica papaya HOM05D006766 ORTHO05D008534 4.0e-21 104.8 96 61.5
Haze_02383 Corylus avellana HOM05D001555 ORTHO05D001616 6.7e-21 104.0 95 63.2
Gohir.D02G215600 Gossypium hirsutum HOM05D006766 ORTHO05D008534 6.7e-21 104.0 97 62.9
Sabra04G0102700 Salix brachista HOM05D006766 ORTHO05D008534 8.8e-21 103.6 97 60.8
Thhalv10026662m.g Eutrema salsugineum HOM05D006766 ORTHO05D008534 1.1e-20 103.2 96 61.5
CiPaw.05G064400 Carya illinoinensis HOM05D006766 ORTHO05D008534 2.0e-20 102.4 97 60.8
FAN16G3600 Fragaria x ananassa HOM05D006766 ORTHO05D008534 2.0e-20 102.4 93 66.7
THA.LOC104824828 Tarenaya hassleriana HOM05D006766 ORTHO05D008534 2.0e-20 102.4 96 61.5
Duzib052G0491 Durio zibethinus HOM05D006766 ORTHO05D008534 2.6e-20 102.1 94 63.8
Ciclev10029674m.g Citrus clementina HOM05D006766 ORTHO05D008534 5.7e-20 100.9 96 60.4
Gohir.A03G194400 Gossypium hirsutum HOM05D006766 ORTHO05D008534 7.4e-20 100.5 97 60.8
BcaNung03879 Brassica carinata HOM05D006766 ORTHO05D008534 1.3e-19 99.8 99 62.6
A01p00310 Brassica napus HOM05D006766 ORTHO05D008534 1.3e-19 99.8 96 59.4
Manes.17G101000 Manihot esculenta HOM05D006766 ORTHO05D008534 1.3e-19 99.8 97 56.7
A06p48570 Brassica napus HOM05D006766 ORTHO05D008534 8.2e-19 97.1 92 59.8
CSS0023455 Camellia sinensis var. sinensis HOM05D006766 ORTHO05D008534 1.1e-18 96.7 99 59.6
BcaNung02343 Brassica carinata HOM05D006766 ORTHO05D008534 1.4e-18 96.3 96 58.3
Nn5g30294 Nelumbo nucifera HOM05D006766 ORTHO05D008534 5.3e-18 94.4 96 56.2
BraA01t00038Z Brassica rapa HOM05D006766 ORTHO05D008534 7.0e-18 94.0 90 61.1
TAR625G1191 Trochodendron aralioides HOM05D006766 ORTHO05D008534 7.0e-18 94.0 98 57.1
Actinidia27896 Actinidia chinensis HOM05D006766 ORTHO05D008534 9.1e-18 93.6 94 59.6
Hma1.2p1_0066F.1_g036420 Hydrangea macrophylla HOM05D006766 ORTHO05D008534 9.1e-18 93.6 103 57.3
C07p63250 Brassica napus HOM05D006766 ORTHO05D008534 1.2e-17 93.2 92 59.8
BolC7t46735H Brassica oleracea HOM05D006766 ORTHO05D008534 1.2e-17 93.2 92 59.8
Gohir.A12G028700 Gossypium hirsutum HOM05D006766 ORTHO05D008534 1.2e-17 93.2 96 57.3
Gohir.D12G028200 Gossypium hirsutum HOM05D006766 ORTHO05D008534 1.2e-17 93.2 96 57.3
Gorai.008G028800 Gossypium raimondii HOM05D006766 ORTHO05D008534 1.2e-17 93.2 96 57.3
Potri.004G154800 Populus trichocarpa HOM05D006766 ORTHO05D008534 1.2e-17 93.2 97 57.7
TAR381G1290 Trochodendron aralioides HOM05D006766 ORTHO05D008534 1.2e-17 93.2 91 59.3
Aa31LG7G14800 Aethionema arabicum HOM05D006766 ORTHO05D008534 3.5e-17 91.7 96 56.2
vmacro02108 Vaccinium macrocarpon HOM05D006766 ORTHO05D008534 3.5e-17 91.7 95 60.0
C01p00430 Brassica napus HOM05D006766 ORTHO05D008534 7.7e-17 90.5 94 59.6
CSS0001017 Camellia sinensis var. sinensis HOM05D006766 ORTHO05D008534 7.7e-17 90.5 95 57.9
PGR142G1230 Punica granatum HOM05D006766 ORTHO05D008534 1.7e-16 89.4 96 54.2
BolC1t00048H Brassica oleracea HOM05D006766 ORTHO05D008534 2.9e-16 88.6 92 59.8
QL12p018934 Quercus lobata HOM05D006766 ORTHO05D008534 6.5e-16 87.4 101 59.4
Sc18g0004470 Simmondsia chinensis HOM05D006766 ORTHO05D008534 6.5e-16 87.4 96 52.1
Cc02_g17570 Coffea canephora HOM05D006766 ORTHO05D008534 8.5e-16 87.0 94 54.3
Lsat_1_v5_gn_5_118560 Lactuca sativa HOM05D006766 ORTHO05D008534 1.5e-15 86.3 98 53.1
Sed0007595 Sechium edule HOM05D006766 ORTHO05D008534 2.5e-15 85.5 97 57.7
Eucgr.I01270 Eucalyptus grandis HOM05D006766 ORTHO05D008534 3.2e-15 85.1 96 52.1
Sed0021705 Sechium edule HOM05D006766 ORTHO05D008534 5.5e-15 84.3 95 57.9
Rhsim11G0177000 Rhododendron simsii HOM05D006766 ORTHO05D008534 7.2e-15 84.0 85 58.8
Nn1g04840 Nelumbo nucifera HOM05D006766 ORTHO05D008534 9.4e-15 83.6 94 57.4
Atru.chr5.3014 Acer truncatum HOM05D006766 ORTHO05D008534 2.1e-14 82.4 83 56.6
PSO541G0900 Papaver somniferum HOM05D006766 ORTHO05D008534 2.1e-14 82.4 97 50.5
Lsat_1_v5_gn_7_89221 Lactuca sativa HOM05D006766 ORTHO05D008534 3.6e-14 81.6 98 56.1
Aa31LG6G15960 Aethionema arabicum HOM05D006766 ORTHO05D008534 4.7e-14 81.3 96 54.2
ECA234G2659 Erigeron canadensis HOM05D006766 ORTHO05D008534 4.7e-14 81.3 100 54.0
RcHm_v2.0_Chr1g0349571 Rosa chinensis HOM05D006766 ORTHO05D008534 8.0e-14 80.5 43 93.0
Hund06233 Selenicereus undatus HOM05D006766 ORTHO05D008534 1.0e-13 80.1 93 54.8
PSO144G0109 Papaver somniferum HOM05D006766 ORTHO05D008534 1.8e-13 79.3 97 48.5
PSO144G0117 Papaver somniferum HOM05D006766 ORTHO05D008534 1.8e-13 79.3 97 48.5
Potri.009G115900 Populus trichocarpa HOM05D006766 ORTHO05D008534 2.3e-13 79.0 92 53.3
ClCG02G005020 Citrullus lanatus HOM05D006766 ORTHO05D008534 3.0e-13 78.6 93 55.9
Lj3g0004404 Lotus japonicus HOM05D006766 ORTHO05D008534 4.0e-13 78.2 97 52.6
PSO675G5258 Papaver somniferum HOM05D006766 ORTHO05D008534 4.0e-13 78.2 97 49.5
EL10Ac9g21725 Beta vulgaris HOM05D006766 ORTHO05D008534 6.8e-13 77.4 98 51.0
HanXRQChr10g0307051 Helianthus annuus HOM05D006766 ORTHO05D008534 8.8e-13 77.0 98 50.0
PSO675G5014 Papaver somniferum HOM05D006766 ORTHO05D008534 8.8e-13 77.0 93 51.6
Ah.01g019400 Amaranthus hybridus HOM05D001555 ORTHO05D001616 1.5e-12 76.3 97 52.6
Hma1.2p1_0633F.1_g192560 Hydrangea macrophylla HOM05D006766 ORTHO05D008534 1.5e-12 76.3 96 54.2
arahy.Tifrunner.gnm1.ann1.0D280N Arachis hypogaea HOM05D006766 ORTHO05D008534 4.4e-12 74.7 88 52.3
arahy.Tifrunner.gnm1.ann1.PI6USP Arachis hypogaea HOM05D006766 ORTHO05D008534 4.4e-12 74.7 88 52.3
Lalb_Chr03g0025701 Lupinus albus HOM05D006766 ORTHO05D008534 4.4e-12 74.7 90 51.1
CsaV3_7G023550 Cucumis sativus L. HOM05D006766 ORTHO05D008534 7.5e-12 73.9 95 53.7
Migut.B00236 Erythranthe guttata HOM05D006766 ORTHO05D008534 7.5e-12 73.9 99 50.5
DCAR_003674 Daucus carota HOM05D006766 ORTHO05D008534 9.8e-12 73.6 85 52.9
Ah.01g006260 Amaranthus hybridus HOM05D006766 ORTHO05D008534 1.3e-11 73.2 92 51.1
Ca_20875_v3 Cicer arietinum L. HOM05D006766 ORTHO05D008534 2.2e-11 72.4 95 47.4
Gorai.005G243600 Gossypium raimondii HOM05D006766 ORTHO05D008534 2.2e-11 72.4 96 47.9
Actinidia08228 Actinidia chinensis HOM05D006766 ORTHO05D008534 2.8e-11 72.0 77 59.7
BcaNung01271 Brassica carinata HOM05D006766 ORTHO05D008534 2.8e-11 72.0 81 58.0
Psat7g184720 Pisum sativum HOM05D006766 ORTHO05D008534 2.8e-11 72.0 95 49.5
Aqoxy5G01642 Aquilegia oxysepala HOM05D006766 ORTHO05D008534 6.3e-11 70.9 95 52.6
Lj5g0021871 Lotus japonicus HOM05D006766 ORTHO05D008534 6.3e-11 70.9 94 52.1
Medtr4g070030 Medicago truncatula HOM05D006766 ORTHO05D008534 6.3e-11 70.9 92 50.0
AUR62016736 Chenopodium quinoa HOM05D006766 ORTHO05D008534 8.3e-11 70.5 87 50.6
AUR62011324 Chenopodium quinoa HOM05D006766 ORTHO05D008534 1.1e-10 70.1 90 48.9
MELO3C012523.2 Cucumis melo HOM05D006766 ORTHO05D008534 1.1e-10 70.1 95 50.5
Glyma.11G117900 Glycine max HOM05D006766 ORTHO05D008534 1.1e-10 70.1 99 49.5
TPR.G19399 Trifolium pratense HOM05D006766 ORTHO05D008534 1.4e-10 69.7 92 46.7
VMungo1127G0063 Vigna mungo HOM05D006766 ORTHO05D008534 1.8e-10 69.3 89 50.6
Glyma.12G043301 Glycine max HOM05D006766 ORTHO05D008534 3.1e-10 68.6 91 50.5
Lalb_Chr01g0002551 Lupinus albus HOM05D006766 ORTHO05D008534 3.1e-10 68.6 95 45.3
Phvul.011G045300 Phaseolus vulgaris HOM05D006766 ORTHO05D008534 5.4e-10 67.8 89 48.3
Lsat_1_v5_gn_9_70521 Lactuca sativa HOM05D006766 ORTHO05D008534 7.0e-10 67.4 91 49.5
Dinv42065 Davidia involucrata HOM05D006766 ORTHO05D008534 9.1e-10 67.0 91 46.2
SalBow6G1480 Salvia bowleyana HOM05D006766 ORTHO05D008534 1.3e-08 63.2 93 49.5
CDE04G2003 Ceratophyllum demersum HOM05D006766 ORTHO05D008534 2.9e-08 62.0 96 44.8
Sabra09G0089100 Salix brachista HOM05D006766 ORTHO05D008534 3.8e-08 61.6 46 65.2
PGR102G1855 Punica granatum HOM05D007491 ORTHO05D009489 6.5e-08 60.8 92 45.7
Lalb_Chr16g0388121 Lupinus albus HOM05D007491 ORTHO05D009489 1.9e-07 59.3 86 46.5
Phvul.002G312200 Phaseolus vulgaris HOM05D007491 ORTHO05D009489 2.5e-07 58.9 81 43.2
CSS0038485 Camellia sinensis var. sinensis HOM05D007491 ORTHO05D009489 3.2e-07 58.5 97 39.2
Glyma.08G037500 Glycine max HOM05D007491 ORTHO05D009489 3.2e-07 58.5 65 52.3
SalBow6G2329 Salvia bowleyana HOM05D006766 ORTHO05D008534 3.2e-07 58.5 40 70.0
Glyma.05G230000 Glycine max HOM05D007491 ORTHO05D009489 4.2e-07 58.2 63 50.8
TPR.G23496 Trifolium pratense HOM05D007491 ORTHO05D009489 4.2e-07 58.2 88 45.5
Sed0025893 Sechium edule HOM05D007491 ORTHO05D009489 7.2e-07 57.4 90 42.2
Lalb_Chr05g0222981 Lupinus albus HOM05D007491 ORTHO05D009489 9.4e-07 57.0 81 43.2
Lj1g0025254 Lotus japonicus HOM05D007429 ORTHO05D003505 1.2e-06 56.6 80 43.8
Thecc.09G041400 Theobroma cacao HOM05D007491 ORTHO05D009489 2.1e-06 55.8 74 50.0
HPP92_017358 Vanilla planifolia HOM05D006766 ORTHO05D008534 2.1e-06 55.8 54 57.4
Nn2g11682 Nelumbo nucifera HOM05D007491 ORTHO05D009489 2.7e-06 55.5 90 43.3
Potri.018G082800 Populus trichocarpa HOM05D007491 ORTHO05D009489 2.7e-06 55.5 83 42.2
Thecc.09G107500 Theobroma cacao HOM05D007491 ORTHO05D009489 2.7e-06 55.5 90 43.3
Duzib150G1582 Durio zibethinus HOM05D007491 ORTHO05D009489 3.6e-06 55.1 92 44.6
Os06g0332500 Oryza sativa ssp. japonica HOM05D007491 ORTHO05D009489 3.6e-06 55.1 81 48.1
Psat7g015280 Pisum sativum HOM05D007491 ORTHO05D009489 3.6e-06 55.1 89 43.8
Ciclev10010763m.g Citrus clementina HOM05D007491 ORTHO05D009489 4.7e-06 54.7 52 51.9
Eucgr.C03814 Eucalyptus grandis HOM05D007491 ORTHO05D009489 6.1e-06 54.3 98 42.9
COL.COLO4_18682 Corchorus olitorius HOM05D007491 ORTHO05D009489 8.0e-06 53.9 74 47.3
Prupe.7G233600 Prunus persica HOM05D007491 ORTHO05D009489 8.0e-06 53.9 77 44.2
QL05p011176 Quercus lobata HOM05D006766 ORTHO05D008534 8.0e-06 53.9 29 86.2


User provided reference genes

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