Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g08141 Fragaria vesca HOM05D003355 ORTHO05D197404 2.9e-143 511.9 264 100.0
RcHm_v2.0_Chr7g0188481 Rosa chinensis HOM05D011179 ORTHO05D017929 1.1e-22 111.3 266 32.0
RcHm_v2.0_Chr3g0481091 Rosa chinensis HOM05D011179 ORTHO05D017929 1.6e-21 107.5 263 30.8
FAN04G2164 Fragaria x ananassa HOM05D003355 ORTHO05D015652 2.0e-19 100.5 170 42.4
FAN08G0872 Fragaria x ananassa HOM05D011179 ORTHO05D017929 1.0e-18 98.2 256 31.6
RcHm_v2.0_Chr3g0469061 Rosa chinensis HOM05D003355 ORTHO05D022549 1.3e-18 97.8 156 39.1
RcHm_v2.0_Chr3g0469081 Rosa chinensis HOM05D003355 ORTHO05D022549 1.3e-18 97.8 156 39.1
FvH4_2g01170 Fragaria vesca HOM05D003355 ORTHO05D025419 4.2e-17 92.8 281 29.2
arahy.Tifrunner.gnm1.ann1.WNI1ZF Arachis hypogaea HOM05D003355 ORTHO05D006192 6.0e-16 89.0 215 37.2
Ca_06140_v3 Cicer arietinum L. HOM05D003355 ORTHO05D006192 7.9e-16 88.6 215 37.2
Ca_06141_v3 Cicer arietinum L. HOM05D003355 ORTHO05D006192 7.9e-16 88.6 215 37.2
Ciclev10020638m.g Citrus clementina HOM05D003355 ORTHO05D006192 1.3e-15 87.8 215 36.3
SalBow8G2178 Salvia bowleyana HOM05D003355 ORTHO05D006192 1.3e-15 87.8 218 34.9
arahy.Tifrunner.gnm1.ann1.A7H436 Arachis hypogaea HOM05D003355 ORTHO05D006192 3.9e-15 86.3 215 36.7
Medtr5g087520 Medicago truncatula HOM05D003355 ORTHO05D006192 5.1e-15 85.9 215 35.8
TPR.G11717 Trifolium pratense HOM05D003355 ORTHO05D006192 5.1e-15 85.9 215 35.8
SalBow3G3003 Salvia bowleyana HOM05D003355 ORTHO05D006192 6.7e-15 85.5 215 35.8
Dinv14066 Davidia involucrata HOM05D003355 ORTHO05D006192 8.7e-15 85.1 215 35.8
Psat2g023040 Pisum sativum HOM05D003355 ORTHO05D006192 1.1e-14 84.7 215 36.3
Rhsim06G0239500 Rhododendron simsii HOM05D003355 ORTHO05D006192 1.1e-14 84.7 215 35.8
vmacro11671 Vaccinium macrocarpon HOM05D003355 ORTHO05D006192 1.1e-14 84.7 215 35.8
RcHm_v2.0_Chr7g0179721 Rosa chinensis HOM05D003355 ORTHO05D025419 1.5e-14 84.3 158 34.8
FAN13G2254 Fragaria x ananassa HOM05D011179 ORTHO05D017929 1.9e-14 84.0 269 29.4
FAN13G3208 Fragaria x ananassa HOM05D011179 ORTHO05D017929 1.9e-14 84.0 269 29.4
RcHm_v2.0_Chr5g0014021 Rosa chinensis HOM05D003355 ORTHO05D013882 1.9e-14 84.0 154 39.6
MSTRG.18871 Avicennia marina HOM05D003355 ORTHO05D006192 3.3e-14 83.2 213 35.2
CSS0050028 Camellia sinensis var. sinensis HOM05D003355 ORTHO05D006192 3.3e-14 83.2 215 36.3
FvH4_5g09780 Fragaria vesca HOM05D011179 ORTHO05D017929 3.3e-14 83.2 242 29.8
FAN23G3013 Fragaria x ananassa HOM05D005731 ORTHO05D202235 3.3e-14 83.2 86 55.8
TAR629G1053 Trochodendron aralioides HOM05D003355 ORTHO05D006192 3.3e-14 83.2 215 36.3
Atru.chr3.4019 Acer truncatum HOM05D003355 ORTHO05D006192 4.3e-14 82.8 215 35.8
CiPaw.05G009200 Carya illinoinensis HOM05D003355 ORTHO05D006192 4.3e-14 82.8 215 35.8
Eucgr.F01461 Eucalyptus grandis HOM05D003355 ORTHO05D006192 4.3e-14 82.8 215 35.3
Glyma.14G045600 Glycine max HOM05D003355 ORTHO05D006192 4.3e-14 82.8 215 35.3
LjContig00564g0020908 Lotus japonicus HOM05D003355 ORTHO05D006192 4.3e-14 82.8 239 34.7
Lalb_Chr10g0105821 Lupinus albus HOM05D003355 ORTHO05D006192 4.3e-14 82.8 215 34.9
Actinidia28067 Actinidia chinensis HOM05D003355 ORTHO05D006192 5.7e-14 82.4 165 40.0
Cpa.g.sc5.209 Carica papaya HOM05D003355 ORTHO05D006192 5.7e-14 82.4 215 36.3
ClCG09G022570 Citrullus lanatus HOM05D003355 ORTHO05D006192 5.7e-14 82.4 213 34.3
TWI60G1544 Tripterygium wilfordii HOM05D003355 ORTHO05D006192 5.7e-14 82.4 215 35.3
GSVIVG01037891001 Vitis vinifera HOM05D003355 ORTHO05D006192 5.7e-14 82.4 215 35.3
FvH4_5g22900 Fragaria vesca HOM05D003355 ORTHO05D015652 7.4e-14 82.0 169 32.5
Glyma.02G273000 Glycine max HOM05D003355 ORTHO05D006192 7.4e-14 82.0 215 34.9
Nn8g39637 Nelumbo nucifera HOM05D003355 ORTHO05D006192 7.4e-14 82.0 215 35.3
FAN15G0401 Fragaria x ananassa HOM05D003355 ORTHO05D015652 9.6e-14 81.6 158 35.4
RcHm_v2.0_Chr7g0223281 Rosa chinensis HOM05D011179 ORTHO05D017929 9.6e-14 81.6 214 32.7
TPR.G15674 Trifolium pratense HOM05D003355 ORTHO05D006192 9.6e-14 81.6 215 35.3
Phvul.008G209100 Phaseolus vulgaris HOM05D003355 ORTHO05D006192 1.3e-13 81.3 215 35.3
RcHm_v2.0_Chr2g0090081 Rosa chinensis HOM05D003355 ORTHO05D015652 1.3e-13 81.3 175 35.4
FAN24G2229 Fragaria x ananassa HOM05D003355 ORTHO05D025419 2.1e-13 80.5 305 27.5
FAN27G2687 Fragaria x ananassa HOM05D003355 ORTHO05D025419 2.1e-13 80.5 309 27.8
CsaV3_7G022720 Cucumis sativus L. HOM05D003355 ORTHO05D006192 2.8e-13 80.1 213 33.8
Oeu052000.3 Olea europaea HOM05D003355 ORTHO05D006192 2.8e-13 80.1 167 38.3
CANSAT78G0728 Cannabis sativa HOM05D003355 ORTHO05D006192 3.7e-13 79.7 215 34.9
Prupe.1G308200 Prunus persica HOM05D003355 ORTHO05D006192 3.7e-13 79.7 212 34.9
Cc05_g16150 Coffea canephora HOM05D003355 ORTHO05D006192 6.3e-13 79.0 215 34.4
SGA_v2.0_scaffold186G40213 Striga asiatica HOM05D003355 ORTHO05D006192 6.3e-13 79.0 163 38.7
QL02p047945 Quercus lobata HOM05D003355 ORTHO05D006192 1.1e-12 78.2 215 34.4
Sed0012728 Sechium edule HOM05D003355 ORTHO05D006192 1.1e-12 78.2 215 34.4
Duzib150G0383 Durio zibethinus HOM05D003355 ORTHO05D006192 1.4e-12 77.8 163 40.5
PSO133G0101 Papaver somniferum HOM05D003355 ORTHO05D006192 1.4e-12 77.8 196 37.8
RcHm_v2.0_Chr5g0014041 Rosa chinensis HOM05D003355 ORTHO05D013882 1.4e-12 77.8 154 35.1
FAN19G0319 Fragaria x ananassa HOM05D003355 ORTHO05D013882 1.8e-12 77.4 153 34.6
Gohir.D02G102800 Gossypium hirsutum HOM05D003355 ORTHO05D006192 1.8e-12 77.4 163 39.3
Gorai.005G116700 Gossypium raimondii HOM05D003355 ORTHO05D006192 1.8e-12 77.4 163 39.3
Nitab4.5_0001583g0050 Nicotiana tabacum HOM05D003355 ORTHO05D006192 1.8e-12 77.4 215 34.0
Hund05007 Selenicereus undatus HOM05D003355 ORTHO05D006192 1.8e-12 77.4 213 33.8
Thhalv10013751m.g Eutrema salsugineum HOM05D003355 ORTHO05D006192 2.4e-12 77.0 160 39.4
PSO541G1087 Papaver somniferum HOM05D003355 ORTHO05D006192 2.4e-12 77.0 196 37.8
RcHm_v2.0_Chr5g0049291 Rosa chinensis HOM05D003355 ORTHO05D015652 2.4e-12 77.0 165 37.6
AUR62026608 Chenopodium quinoa HOM05D003355 ORTHO05D006192 3.1e-12 76.6 213 33.3
AUR62036327 Chenopodium quinoa HOM05D003355 ORTHO05D006192 3.1e-12 76.6 213 33.3
COL.COLO4_07227 Corchorus olitorius HOM05D003355 ORTHO05D006192 3.1e-12 76.6 160 39.4
Duzib170G1171 Durio zibethinus HOM05D003355 ORTHO05D006192 3.1e-12 76.6 163 39.9
Hma1.2p1_0334F.1_g128710 Hydrangea macrophylla HOM05D003355 ORTHO05D006192 3.1e-12 76.6 163 39.3
RcHm_v2.0_Chr7g0210441 Rosa chinensis HOM05D012211 ORTHO05D029661 3.1e-12 76.6 150 36.7
Thecc.09G244300 Theobroma cacao HOM05D003355 ORTHO05D006192 3.1e-12 76.6 163 39.3
Migut.M01551 Erythranthe guttata HOM05D003355 ORTHO05D006192 4.1e-12 76.3 215 34.0
FAN14G2936 Fragaria x ananassa HOM05D012211 ORTHO05D029661 4.1e-12 76.3 270 27.0
FvH4_1g11160 Fragaria vesca HOM05D003355 ORTHO05D013882 5.3e-12 75.9 153 34.0
FvH4_6g42520 Fragaria vesca HOM05D012211 ORTHO05D029661 5.3e-12 75.9 272 26.8
Os10g0452800 Oryza sativa ssp. japonica HOM05D003355 ORTHO05D006192 6.9e-12 75.5 212 34.0
Ah.04g164110 Amaranthus hybridus HOM05D003355 ORTHO05D006192 9.0e-12 75.1 213 32.9
EL10Ac3g07470 Beta vulgaris HOM05D003355 ORTHO05D006192 9.0e-12 75.1 213 32.9
A10p28340 Brassica napus HOM05D003355 ORTHO05D006192 9.0e-12 75.1 160 38.1
BolC9t59602H Brassica oleracea HOM05D003355 ORTHO05D006192 9.0e-12 75.1 160 38.1
BraA10t44881Z Brassica rapa HOM05D003355 ORTHO05D006192 9.0e-12 75.1 160 38.1
FAN08G1058 Fragaria x ananassa HOM05D011179 ORTHO05D017929 9.0e-12 75.1 263 27.4
Rhsim10G0069800 Rhododendron simsii HOM05D003355 ORTHO05D006192 9.0e-12 75.1 231 32.5
FvH4_4g27690 Fragaria vesca HOM05D003355 ORTHO05D006192 1.2e-11 74.7 215 34.0
FAN12G1390 Fragaria x ananassa HOM05D003355 ORTHO05D006192 1.2e-11 74.7 215 34.0
FAN12G1758 Fragaria x ananassa HOM05D003355 ORTHO05D006192 1.2e-11 74.7 215 34.0
FAN22G1021 Fragaria x ananassa HOM05D003355 ORTHO05D006192 1.2e-11 74.7 215 34.0
Lsat_1_v5_gn_7_68200 Lactuca sativa HOM05D003355 ORTHO05D006192 1.2e-11 74.7 215 34.4
THA.LOC104818391 Tarenaya hassleriana HOM05D003355 ORTHO05D006192 1.2e-11 74.7 215 34.4
BcaB08g37262 Brassica carinata HOM05D003355 ORTHO05D006192 1.5e-11 74.3 160 38.1
MD13G1044300 Malus domestica HOM05D003355 ORTHO05D006192 1.5e-11 74.3 160 39.4
Nitab4.5_0001225g0080 Nicotiana tabacum HOM05D003355 ORTHO05D006192 1.5e-11 74.3 215 33.0
RcHm_v2.0_Chr4g0435531 Rosa chinensis HOM05D003355 ORTHO05D006192 1.5e-11 74.3 215 34.0
MD16G1045100 Malus domestica HOM05D003355 ORTHO05D006192 2.0e-11 73.9 160 38.8
RcHm_v2.0_Chr5g0014031 Rosa chinensis HOM05D003355 ORTHO05D013882 2.0e-11 73.9 153 34.0
THA.LOC104826152 Tarenaya hassleriana HOM05D003355 ORTHO05D006192 2.0e-11 73.9 215 33.5
ATR0559G338 Amborella trichopoda HOM05D003355 ORTHO05D006192 2.6e-11 73.6 212 34.0
Aqoxy4G00025 Aquilegia oxysepala HOM05D003355 ORTHO05D006192 2.6e-11 73.6 171 38.0
AT5G08420 Arabidopsis thaliana HOM05D003355 ORTHO05D006192 2.6e-11 73.6 160 38.1
EL10Ac1g02148 Beta vulgaris HOM05D003355 ORTHO05D006192 2.6e-11 73.6 213 32.4
FvH4_3g36460 Fragaria vesca HOM05D012211 ORTHO05D197262 2.6e-11 73.6 161 34.8
Sp6g34500 Schrenkiella parvula HOM05D003355 ORTHO05D006192 2.6e-11 73.6 160 38.1
AL6G18890 Arabidopsis lyrata HOM05D003355 ORTHO05D006192 3.4e-11 73.2 163 37.4
EL10Ac2g03332 Beta vulgaris HOM05D003355 ORTHO05D006192 3.4e-11 73.2 213 32.9
ECA240G2766 Erigeron canadensis HOM05D003355 ORTHO05D006192 3.4e-11 73.2 163 39.3
Gohir.A02G087800 Gossypium hirsutum HOM05D003355 ORTHO05D006192 3.4e-11 73.2 161 38.5
MD03G1170900 Malus domestica HOM05D003355 ORTHO05D015652 3.4e-11 73.2 163 32.5
Aa31LG3G18130 Aethionema arabicum HOM05D003355 ORTHO05D006192 4.5e-11 72.8 163 38.0
HPP92_009124 Vanilla planifolia HOM05D003355 ORTHO05D006192 4.5e-11 72.8 212 33.5
FAN18G3963 Fragaria x ananassa HOM05D003355 ORTHO05D015652 7.6e-11 72.0 116 42.2
C09p68600 Brassica napus HOM05D003355 ORTHO05D006192 1.0e-10 71.6 157 38.2
MELO3C012627.2 Cucumis melo HOM05D003355 ORTHO05D006192 1.0e-10 71.6 194 33.5
Mapoly0002s0245 Marchantia polymorpha HOM05D003355 ORTHO05D006192 1.0e-10 71.6 212 34.0
Peaxi162Scf01064g00246 Petunia axillaris HOM05D003355 ORTHO05D006192 1.3e-10 71.2 216 32.4
Peaxi162Scf53097g00004 Petunia axillaris HOM05D003355 ORTHO05D006192 1.3e-10 71.2 216 32.4
BraA02t04958Z Brassica rapa HOM05D003355 ORTHO05D006192 1.7e-10 70.9 160 36.9
PGR142G1845 Punica granatum HOM05D003355 ORTHO05D006192 1.7e-10 70.9 211 34.1
BcaC03g13229 Brassica carinata HOM05D003355 ORTHO05D006192 2.2e-10 70.5 160 36.9
C02p03610 Brassica napus HOM05D003355 ORTHO05D006192 2.2e-10 70.5 160 36.9
BolC2t06320H Brassica oleracea HOM05D003355 ORTHO05D006192 2.2e-10 70.5 160 36.9
Carub.0006s0734 Capsella rubella HOM05D003355 ORTHO05D006192 2.9e-10 70.1 163 35.6
FvH4_3g36450 Fragaria vesca HOM05D012211 ORTHO05D013882 2.9e-10 70.1 172 30.8
FAN27G0385 Fragaria x ananassa HOM05D005331 ORTHO05D007596 2.9e-10 70.1 202 31.2
HanXRQChr16g0498231 Helianthus annuus HOM05D003355 ORTHO05D006192 2.9e-10 70.1 163 38.0
MD04G1231500 Malus domestica HOM05D003355 ORTHO05D013882 2.9e-10 70.1 75 46.7
RcHm_v2.0_Chr7g0191051 Rosa chinensis HOM05D003355 ORTHO05D347038 3.8e-10 69.7 182 33.0
FvH4_6g02020 Fragaria vesca HOM05D017208 ORTHO05D025447 5.0e-10 69.3 158 34.8
FAN09G1640 Fragaria x ananassa HOM05D017208 ORTHO05D025447 5.0e-10 69.3 158 34.8
AagrBONN_evm.TU.Sc2ySwM_117.1345 Anthoceros agrestis HOM05D003355 ORTHO05D006192 1.1e-09 68.2 212 32.1
FAN25G2890 Fragaria x ananassa HOM05D012211 ORTHO05D205130 1.4e-09 67.8 174 30.5
Zm00001eb155040 Zea mays HOM05D003355 ORTHO05D006192 1.4e-09 67.8 157 40.1
CDE07G1612 Ceratophyllum demersum HOM05D003355 ORTHO05D006192 1.9e-09 67.4 211 33.6
Pp3c24_18710 Physcomitrium patens HOM05D003355 ORTHO05D006192 1.9e-09 67.4 206 31.1
Prupe.6G351700 Prunus persica HOM05D003355 ORTHO05D013882 1.9e-09 67.4 155 34.2
DCAR_016825 Daucus carota HOM05D003355 ORTHO05D006192 3.2e-09 66.6 164 37.8
BolC3t13633H Brassica oleracea HOM05D003355 ORTHO05D006192 7.2e-09 65.5 157 36.3
FvH4_6g42550 Fragaria vesca HOM05D012211 ORTHO05D045515 9.3e-09 65.1 159 30.2
CBR_g23447 Chara braunii HOM05D003355 ORTHO05D006192 1.2e-08 64.7 162 35.2
MCO15G216 Micromonas commoda HOM05D003355 ORTHO05D006192 1.2e-08 64.7 160 33.8
MD02G1015700 Malus domestica HOM05D003355 ORTHO05D247400 2.1e-08 63.9 160 34.4
Potri.007G065500 Populus trichocarpa HOM05D003355 ORTHO05D006192 2.1e-08 63.9 216 32.4
BraA02t04852Z Brassica rapa HOM05D003355 ORTHO05D006192 2.7e-08 63.5 156 34.6
FAN07G1422 Fragaria x ananassa HOM05D003355 ORTHO05D006192 2.7e-08 63.5 212 31.1
FAN14G1550 Fragaria x ananassa HOM05D012211 ORTHO05D204992 2.7e-08 63.5 161 30.4
FAN13G3109 Fragaria x ananassa HOM05D000142 ORTHO05D000124 3.6e-08 63.2 241 29.9
Manes.06G172500 Manihot esculenta HOM05D003355 ORTHO05D006192 3.6e-08 63.2 154 37.7
FAN05G2571 Fragaria x ananassa HOM05D012211 ORTHO05D045515 6.1e-08 62.4 161 29.2
Prupe.2G125300 Prunus persica HOM05D003355 ORTHO05D013882 6.1e-08 62.4 156 32.7
FAN05G1965 Fragaria x ananassa HOM05D000162 ORTHO05D000090 1.0e-07 61.6 159 32.1
Cre12.g508200 Chlamydomonas reinhardtii HOM05D003355 ORTHO05D006192 1.3e-07 61.2 160 35.6
CARHR204600 Cardamine hirsuta HOM05D003355 ORTHO05D006192 1.8e-07 60.8 160 34.4
QL02p103586 Quercus lobata HOM05D003355 ORTHO05D006192 3.0e-07 60.1 141 37.6
C02p02380 Brassica napus HOM05D003355 ORTHO05D006192 3.9e-07 59.7 156 34.0
FvH4_6g02030 Fragaria vesca HOM05D017208 ORTHO05D025447 6.7e-07 58.9 164 33.5
FAN20G1497 Fragaria x ananassa HOM05D011179 ORTHO05D015652 8.7e-07 58.5 81 38.3
QL01p011915 Quercus lobata HOM05D003355 ORTHO05D006192 8.7e-07 58.5 141 37.6
Actinidia29266 Actinidia chinensis HOM05D003355 ORTHO05D006192 1.1e-06 58.2 140 36.4
FAN13G2726 Fragaria x ananassa HOM05D003355 ORTHO05D022549 1.5e-06 57.8 90 41.1
CARHR204610 Cardamine hirsuta HOM05D003355 ORTHO05D006192 2.5e-06 57.0 156 32.7
CARHR204150 Cardamine hirsuta HOM05D003355 ORTHO05D006192 3.3e-06 56.6 156 32.1
SMO169G0154 Selaginella moellendorffii HOM05D003355 ORTHO05D006192 3.3e-06 56.6 160 33.1
BolC2t06203H Brassica oleracea HOM05D003355 ORTHO05D006192 5.7e-06 55.8 156 34.0


User provided reference genes

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