Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g07650 Fragaria vesca HOM05D003604 ORTHO05D004110 7.0e-150 533.9 262 100.0
FAN15G1062 Fragaria x ananassa HOM05D003604 ORTHO05D004110 1.9e-123 446.0 331 72.2
FAN22G2085 Fragaria x ananassa HOM05D003604 ORTHO05D004110 1.9e-123 446.0 331 72.2
FAN15G2058 Fragaria x ananassa HOM05D003604 ORTHO05D004110 2.5e-123 445.7 331 71.9
FAN24G2186 Fragaria x ananassa HOM05D003604 ORTHO05D004110 4.8e-122 441.4 331 71.6
FvH4_2g07500 Fragaria vesca HOM05D003604 ORTHO05D004110 3.1e-121 438.7 331 71.3
FAN24G0344 Fragaria x ananassa HOM05D003604 ORTHO05D004110 2.6e-120 435.6 331 70.7
FAN24G1060 Fragaria x ananassa HOM05D003604 ORTHO05D004110 2.9e-119 432.2 331 70.7
FvH4_2g07560 Fragaria vesca HOM05D003604 ORTHO05D004110 1.1e-115 420.2 286 78.0
FvH4_2g07570 Fragaria vesca HOM05D003604 ORTHO05D004110 1.1e-115 420.2 286 78.0
FvH4_1g24830 Fragaria vesca HOM05D003604 ORTHO05D004110 6.0e-101 371.3 332 63.0
FAN19G0122 Fragaria x ananassa HOM05D003604 ORTHO05D004110 5.1e-100 368.2 332 62.3
FAN19G2257 Fragaria x ananassa HOM05D003604 ORTHO05D004110 4.3e-99 365.2 332 62.0
FvH4_2g07580 Fragaria vesca HOM05D003604 ORTHO05D004110 9.0e-97 357.5 289 67.5
RcHm_v2.0_Chr5g0036961 Rosa chinensis HOM05D003604 ORTHO05D004110 5.1e-92 341.7 342 57.3
FvH4_2g07550 Fragaria vesca HOM05D003604 ORTHO05D004110 6.7e-92 341.3 331 59.5
FvH4_3g21511 Fragaria vesca HOM05D003604 ORTHO05D004110 1.5e-91 340.1 342 57.0
Phvul.011G146000 Phaseolus vulgaris HOM05D003604 ORTHO05D004110 1.5e-88 330.1 308 60.1
Haze_09573 Corylus avellana HOM05D003604 ORTHO05D004110 2.6e-88 329.3 343 56.3
Cfa020470 Carpinus fangiana HOM05D003604 ORTHO05D004110 3.4e-88 328.9 330 57.0
MD03G1215400 Malus domestica HOM05D003604 ORTHO05D004110 3.4e-88 328.9 343 55.7
FvH4_1g24790 Fragaria vesca HOM05D003604 ORTHO05D004110 4.5e-88 328.6 307 60.3
COL.COLO4_09536 Corchorus olitorius HOM05D003604 ORTHO05D004110 5.9e-88 328.2 343 56.0
MD11G1230000 Malus domestica HOM05D003604 ORTHO05D004110 1.0e-87 327.4 343 55.7
QL08p014504 Quercus lobata HOM05D003604 ORTHO05D004110 2.2e-87 326.2 343 55.7
Thecc.07G059200 Theobroma cacao HOM05D003604 ORTHO05D004110 2.2e-87 326.2 343 55.4
Cpa.g.sc80.125 Carica papaya HOM05D003604 ORTHO05D004110 2.9e-87 325.9 343 56.0
Glyma.08G209500 Glycine max HOM05D003604 ORTHO05D004110 3.8e-87 325.5 342 55.0
PGR031G2944 Punica granatum HOM05D003604 ORTHO05D004110 8.5e-87 324.3 345 54.8
arahy.Tifrunner.gnm1.ann1.6T0369 Arachis hypogaea HOM05D003604 ORTHO05D004110 1.1e-86 323.9 322 56.8
VMungo1127G0543 Vigna mungo HOM05D003604 ORTHO05D004110 1.1e-86 323.9 342 54.7
Gorai.013G165200 Gossypium raimondii HOM05D003604 ORTHO05D004110 1.4e-86 323.6 335 54.6
CsaV3_3G022660 Cucumis sativus L. HOM05D003604 ORTHO05D004110 3.2e-86 322.4 341 54.0
Gohir.A13G142800 Gossypium hirsutum HOM05D003604 ORTHO05D004110 4.2e-86 322.0 335 54.3
TWI38G1923 Tripterygium wilfordii HOM05D003604 ORTHO05D004110 5.5e-86 321.6 342 54.1
MELO3C018155.2 Cucumis melo HOM05D003604 ORTHO05D004110 1.2e-85 320.5 343 54.2
Ca_26239_v3 Cicer arietinum L. HOM05D003604 ORTHO05D004110 2.1e-85 319.7 342 54.1
Ca_30045_v3 Cicer arietinum L. HOM05D003604 ORTHO05D004110 2.1e-85 319.7 342 54.1
TAR624G0573 Trochodendron aralioides HOM05D003604 ORTHO05D004110 2.1e-85 319.7 343 54.2
BraA05t21698Z Brassica rapa HOM05D003604 ORTHO05D004110 2.7e-85 319.3 343 54.8
CSS0036620 Camellia sinensis var. sinensis HOM05D003604 ORTHO05D004110 4.7e-85 318.5 343 54.5
CSS0043024 Camellia sinensis var. sinensis HOM05D003604 ORTHO05D004110 4.7e-85 318.5 343 54.5
Duzib268G0095 Durio zibethinus HOM05D003604 ORTHO05D004110 4.7e-85 318.5 343 54.2
CANSAT11G1782 Cannabis sativa HOM05D003604 ORTHO05D004110 6.1e-85 318.2 341 54.3
A05p28150 Brassica napus HOM05D003604 ORTHO05D004110 7.9e-85 317.8 343 54.5
BraA01t03518Z Brassica rapa HOM05D003604 ORTHO05D004110 7.9e-85 317.8 344 53.2
AT3G20650 Arabidopsis thaliana HOM05D003604 ORTHO05D004110 1.0e-84 317.4 343 54.5
A01p34140 Brassica napus HOM05D003604 ORTHO05D004110 1.0e-84 317.4 345 53.0
BcaC09g49007 Brassica carinata HOM05D003604 ORTHO05D004110 1.4e-84 317.0 343 53.6
Glyma.06G263000 Glycine max HOM05D003604 ORTHO05D004110 1.4e-84 317.0 342 54.1
Lalb_Chr03g0030231 Lupinus albus HOM05D003604 ORTHO05D004110 1.4e-84 317.0 342 54.1
Eucgr.F03392 Eucalyptus grandis HOM05D003604 ORTHO05D004110 1.8e-84 316.6 325 55.7
arahy.Tifrunner.gnm1.ann1.B3WQY9 Arachis hypogaea HOM05D003604 ORTHO05D004110 3.0e-84 315.8 341 53.4
BcaB04g20641 Brassica carinata HOM05D003604 ORTHO05D004110 3.0e-84 315.8 345 53.0
CARHR096460 Cardamine hirsuta HOM05D003604 ORTHO05D004110 3.9e-84 315.5 342 54.1
AL3G34530 Arabidopsis lyrata HOM05D003604 ORTHO05D004110 5.1e-84 315.1 343 54.2
BcaC05g28298 Brassica carinata HOM05D003604 ORTHO05D004110 5.1e-84 315.1 343 54.2
ECA240G0441 Erigeron canadensis HOM05D003604 ORTHO05D004110 5.1e-84 315.1 339 52.5
Nitab4.5_0000335g0020 Nicotiana tabacum HOM05D003604 ORTHO05D004110 5.1e-84 315.1 343 53.9
GSVIVG01014550001 Vitis vinifera HOM05D003604 ORTHO05D004110 5.1e-84 315.1 343 53.9
C05p43600 Brassica napus HOM05D003604 ORTHO05D004110 6.7e-84 314.7 343 54.5
Ciclev10008689m.g Citrus clementina HOM05D003604 ORTHO05D004110 6.7e-84 314.7 334 53.9
DCAR_010007 Daucus carota HOM05D003604 ORTHO05D004110 6.7e-84 314.7 343 52.8
C01p43560 Brassica napus HOM05D003604 ORTHO05D004110 8.8e-84 314.3 343 53.4
BolC1t04317H Brassica oleracea HOM05D003604 ORTHO05D004110 8.8e-84 314.3 343 53.4
Cc05_g12990 Coffea canephora HOM05D003604 ORTHO05D004110 8.8e-84 314.3 343 52.8
Gohir.D01G059000 Gossypium hirsutum HOM05D003604 ORTHO05D004110 8.8e-84 314.3 343 52.8
TPR.G4607 Trifolium pratense HOM05D003604 ORTHO05D004110 8.8e-84 314.3 342 53.2
BcaB06g26132 Brassica carinata HOM05D003604 ORTHO05D004110 1.1e-83 313.9 343 54.2
Gohir.A01G072200 Gossypium hirsutum HOM05D003604 ORTHO05D004110 1.1e-83 313.9 343 52.8
Lalb_Chr01g0006251 Lupinus albus HOM05D003604 ORTHO05D004110 1.1e-83 313.9 342 53.5
Gorai.002G080000 Gossypium raimondii HOM05D003604 ORTHO05D004110 1.5e-83 313.5 343 52.8
CSS0042481 Camellia sinensis var. sinensis HOM05D003604 ORTHO05D004110 2.0e-83 313.2 311 55.9
Carub.0003s2063 Capsella rubella HOM05D003604 ORTHO05D004110 2.0e-83 313.2 343 54.2
ClCG05G014980 Citrullus lanatus HOM05D003604 ORTHO05D004110 2.0e-83 313.2 308 55.8
Sed0007679 Sechium edule HOM05D003604 ORTHO05D004110 2.0e-83 313.2 311 55.3
Duzib213G0846 Durio zibethinus HOM05D003604 ORTHO05D004110 3.3e-83 312.4 343 52.5
Lj8C164T0 Lonicera japonica HOM05D003604 ORTHO05D004110 4.4e-83 312.0 344 53.8
Sp3g18690 Schrenkiella parvula HOM05D003604 ORTHO05D004110 4.4e-83 312.0 343 53.6
BolC5t33080H Brassica oleracea HOM05D003604 ORTHO05D004110 5.7e-83 311.6 344 53.5
Nitab4.5_0000511g0020 Nicotiana tabacum HOM05D003604 ORTHO05D004110 5.7e-83 311.6 343 53.4
vmacro01905 Vaccinium macrocarpon HOM05D003604 ORTHO05D004110 5.7e-83 311.6 343 53.4
Thhalv10020966m.g Eutrema salsugineum HOM05D003604 ORTHO05D004110 7.4e-83 311.2 344 53.5
Solyc03g118250.4 Solanum lycopersicum HOM05D003604 ORTHO05D004110 9.7e-83 310.8 344 52.9
Medtr6g003920 Medicago truncatula HOM05D003604 ORTHO05D004110 1.3e-82 310.5 342 53.2
Atru.chr2.3131 Acer truncatum HOM05D003604 ORTHO05D004110 1.7e-82 310.1 342 52.9
Actinidia00329 Actinidia chinensis HOM05D003604 ORTHO05D004110 1.7e-82 310.1 344 51.7
Manes.14G113200 Manihot esculenta HOM05D003604 ORTHO05D004110 1.7e-82 310.1 302 56.3
Psat7g153240 Pisum sativum HOM05D003604 ORTHO05D004110 1.7e-82 310.1 342 53.2
Sed0017338 Sechium edule HOM05D003604 ORTHO05D004110 1.7e-82 310.1 343 53.1
Solyc09g005300.3 Solanum lycopersicum HOM05D003604 ORTHO05D004110 1.7e-82 310.1 343 52.5
Sopen09g001270 Solanum pennellii HOM05D003604 ORTHO05D004110 1.7e-82 310.1 343 52.5
Lj3g0004246 Lotus japonicus HOM05D003604 ORTHO05D004110 2.2e-82 309.7 342 52.6
RcHm_v2.0_Chr1g0332461 Rosa chinensis HOM05D003604 ORTHO05D004110 2.8e-82 309.3 343 52.8
AL1G58850 Arabidopsis lyrata HOM05D003604 ORTHO05D004110 3.7e-82 308.9 332 52.4
Aa31LG10G3370 Aethionema arabicum HOM05D003604 ORTHO05D004110 4.8e-82 308.5 344 53.5
CAN.G843.15 Capsicum annuum HOM05D003604 ORTHO05D004110 4.8e-82 308.5 344 52.6
Lj1g0019007 Lotus japonicus HOM05D003604 ORTHO05D004110 4.8e-82 308.5 338 53.3
PSO832G4297 Papaver somniferum HOM05D003604 ORTHO05D004110 4.8e-82 308.5 341 52.8
THA.LOC104817889 Tarenaya hassleriana HOM05D003604 ORTHO05D004110 4.8e-82 308.5 320 54.4
Atru.chr2.3114 Acer truncatum HOM05D003604 ORTHO05D004110 6.3e-82 308.1 342 52.6
HanXRQChr13g0407501 Helianthus annuus HOM05D003604 ORTHO05D004110 6.3e-82 308.1 340 52.4
PSO210G6085 Papaver somniferum HOM05D003604 ORTHO05D004110 6.3e-82 308.1 341 52.8
Sopen03g037160 Solanum pennellii HOM05D003604 ORTHO05D004110 6.3e-82 308.1 343 52.2
Medtr7g110030 Medicago truncatula HOM05D003604 ORTHO05D004110 1.8e-81 306.6 342 52.6
Aqoxy1G03843 Aquilegia oxysepala HOM05D003604 ORTHO05D004110 2.4e-81 306.2 350 50.9
CAN.G5.14 Capsicum annuum HOM05D003604 ORTHO05D004110 3.1e-81 305.8 343 52.5
Hma1.2p1_0456F.1_g156560 Hydrangea macrophylla HOM05D003604 ORTHO05D004110 4.1e-81 305.4 345 52.2
SGA_v2.0_scaffold9G05001 Striga asiatica HOM05D003604 ORTHO05D004110 5.3e-81 305.1 344 52.0
MBI18_g38395_MAGBIO Magnolia biondii HOM05D003604 ORTHO05D004110 9.1e-81 304.3 349 51.3
Oeu060531.1 Olea europaea HOM05D003604 ORTHO05D004110 9.1e-81 304.3 310 54.8
Migut.H01877 Erythranthe guttata HOM05D003604 ORTHO05D004110 1.2e-80 303.9 344 52.0
Oeu005439.1 Olea europaea HOM05D003604 ORTHO05D004110 1.5e-80 303.5 311 53.7
CDE05G1290 Ceratophyllum demersum HOM05D003604 ORTHO05D004110 7.7e-80 301.2 344 50.9
Sc03g0009420 Simmondsia chinensis HOM05D003604 ORTHO05D004110 7.7e-80 301.2 318 53.1
Nn2g10854 Nelumbo nucifera HOM05D003604 ORTHO05D004110 1.0e-79 300.8 343 51.3
CARHR041070 Cardamine hirsuta HOM05D003604 ORTHO05D004110 1.7e-79 300.1 344 53.2
AUR62029554 Chenopodium quinoa HOM05D003604 ORTHO05D004110 1.7e-79 300.1 347 49.9
AUR62041148 Chenopodium quinoa HOM05D003604 ORTHO05D004110 3.2e-78 295.8 338 50.6
EL10Ac4g08013 Beta vulgaris HOM05D003604 ORTHO05D004110 2.1e-77 293.1 314 50.3
Potri.011G130100 Populus trichocarpa HOM05D003604 ORTHO05D004110 2.1e-77 293.1 332 50.6
AUR62034817 Chenopodium quinoa HOM05D003604 ORTHO05D004110 3.6e-77 292.4 358 47.5
CiPaw.12G124800 Carya illinoinensis HOM05D003604 ORTHO05D004110 4.7e-77 292.0 342 50.9
HPP92_020594 Vanilla planifolia HOM05D003604 ORTHO05D004110 5.2e-76 288.5 342 50.6
PSO675G0229 Papaver somniferum HOM05D003604 ORTHO05D004110 1.5e-75 287.0 340 50.0
PSO541G3797 Papaver somniferum HOM05D003604 ORTHO05D004110 4.4e-75 285.4 338 50.6
ATR0721G088 Amborella trichopoda HOM05D003604 ORTHO05D004110 1.3e-74 283.9 340 49.4
Sabra11G0117500 Salix brachista HOM05D003604 ORTHO05D004110 1.1e-73 280.8 311 49.8
Peaxi162Scf00141g00107 Petunia axillaris HOM05D003604 ORTHO05D004110 8.5e-71 271.2 311 50.2
arahy.Tifrunner.gnm1.ann1.PLB5QN Arachis hypogaea HOM05D003604 ORTHO05D004110 3.2e-70 269.2 310 50.3
Lsat_1_v5_gn_9_94841 Lactuca sativa HOM05D003604 ORTHO05D004110 7.2e-70 268.1 365 47.1
arahy.Tifrunner.gnm1.ann1.QJA41V Arachis hypogaea HOM05D003604 ORTHO05D004110 1.2e-69 267.3 342 48.0
FAN11G1546 Fragaria x ananassa HOM05D000073 ORTHO05D004110 1.2e-69 267.3 281 54.1
arahy.Tifrunner.gnm1.ann1.R4IE40 Arachis hypogaea HOM05D003604 ORTHO05D004110 2.1e-69 266.5 348 47.4
Prupe.4G197400 Prunus persica HOM05D003604 ORTHO05D004110 6.1e-69 265.0 300 53.0
FAN25G2942 Fragaria x ananassa HOM05D000073 ORTHO05D004110 2.3e-68 263.1 281 53.4
FAN16G3577 Fragaria x ananassa HOM05D003604 ORTHO05D004110 5.7e-67 258.5 148 81.8
Pp3c23_20110 Physcomitrium patens HOM05D003604 ORTHO05D004110 7.5e-67 258.1 313 45.4
FvH4_6g24821 Fragaria vesca HOM05D003604 ORTHO05D004110 1.7e-66 256.9 148 82.4
Hund23359 Selenicereus undatus HOM05D003604 ORTHO05D004110 1.7e-66 256.9 351 46.4
unitig_746.g26818 Utricularia gibba HOM05D003604 ORTHO05D000209 4.5e-64 248.8 307 47.6
Mapoly0053s0007 Marchantia polymorpha HOM05D003604 ORTHO05D004110 7.7e-64 248.1 312 45.8
SalBow7G1717 Salvia bowleyana HOM05D003604 ORTHO05D004110 2.7e-61 239.6 148 76.4
Os08g0180000 Oryza sativa ssp. japonica HOM05D003604 ORTHO05D004110 8.8e-60 234.6 152 71.1
Zm00001eb054690 Zea mays HOM05D003604 ORTHO05D004110 8.8e-60 234.6 151 71.5
DCAR_022503 Daucus carota HOM05D003604 ORTHO05D004110 1.2e-59 234.2 296 49.0
SMO266G0094 Selaginella moellendorffii HOM05D003604 ORTHO05D004110 2.0e-59 233.4 303 44.2
TAR626G0206 Trochodendron aralioides HOM05D003604 ORTHO05D004110 7.5e-59 231.5 278 51.1
Gohir.D13G147400 Gossypium hirsutum HOM05D003604 ORTHO05D004110 1.3e-58 230.7 271 50.2
CiPaw.11G180300 Carya illinoinensis HOM05D003604 ORTHO05D004110 1.4e-57 227.3 287 49.8
AUR62029271 Chenopodium quinoa HOM05D003604 ORTHO05D004110 9.1e-57 224.6 336 43.5
CBR_g12774 Chara braunii HOM05D003604 ORTHO05D004110 8.6e-55 218.0 303 41.6
FAN23G2626 Fragaria x ananassa HOM05D003604 ORTHO05D004110 1.6e-53 213.8 126 81.0
SHI31882 Sapria himalayana HOM05D003604 ORTHO05D004110 8.9e-52 208.0 330 41.8
Manes.06G031600 Manihot esculenta HOM05D003604 ORTHO05D004110 4.5e-48 195.7 187 54.5
BcaC03g16005 Brassica carinata HOM05D003604 ORTHO05D004110 1.5e-46 190.7 143 66.4
PRCOL_00001408 Prasinoderma coloniale HOM05D003604 ORTHO05D004110 3.3e-46 189.5 295 36.3
AagrBONN_evm.TU.Sc2ySwM_362.2832 Anthoceros agrestis HOM05D003604 ORTHO05D004110 9.5e-46 188.0 249 44.2
Dinv22327 Davidia involucrata HOM05D003604 ORTHO05D004110 2.1e-45 186.8 258 46.5
MCO04G471 Micromonas commoda HOM05D003604 ORTHO05D004110 3.1e-44 183.0 302 38.1
FAN26G1617 Fragaria x ananassa HOM05D003604 ORTHO05D004110 1.6e-40 170.6 93 84.9
BcaC05g28687 Brassica carinata HOM05D003604 ORTHO05D004110 1.5e-35 154.1 139 59.7
AagrBONN_evm.TU.Sc2ySwM_228.4281 Anthoceros agrestis HOM05D003604 ORTHO05D004110 3.1e-28 129.8 84 65.5
PGSC0003DMG400023083 Solanum tuberosum HOM05D003604 ORTHO05D004110 2.4e-25 120.2 225 40.4
SalBow7G3912 Salvia bowleyana HOM05D003604 ORTHO05D004110 3.5e-24 116.3 98 65.3
PGSC0003DMG402014244 Solanum tuberosum HOM05D003604 ORTHO05D004110 1.5e-22 110.9 97 63.9
SEGI_38117 Sequoiadendron giganteum HOM05D003604 ORTHO05D004110 2.4e-20 103.6 90 62.2
BolC5t33545H Brassica oleracea HOM05D003604 ORTHO05D004110 5.2e-20 102.4 76 65.8
BolC5t33536H Brassica oleracea HOM05D003604 ORTHO05D004110 6.8e-20 102.1 76 65.8
BolC2t09773H Brassica oleracea HOM05D003604 ORTHO05D004110 1.3e-18 97.8 78 61.5
MD11G1013800 Malus domestica HOM05D003604 ORTHO05D004110 4.2e-17 92.8 54 79.6
Sabra16G0281000 Salix brachista HOM05D003604 ORTHO05D004110 4.2e-17 92.8 73 63.0
SMO351G0048 Selaginella moellendorffii HOM05D003604 ORTHO05D004110 2.7e-16 90.1 294 29.6
A06p30220 Brassica napus HOM05D003604 ORTHO05D004110 3.1e-12 76.6 64 57.8
A09p03180 Brassica napus HOM05D003604 ORTHO05D004110 2.6e-11 73.6 74 55.4
BraA07t29089Z Brassica rapa HOM05D003604 ORTHO05D004110 2.6e-11 73.6 74 55.4
GSVIVG01018836001 Vitis vinifera HOM05D003604 ORTHO05D004110 1.7e-10 70.9 38 84.2
BcaC03g16006 Brassica carinata HOM05D003604 ORTHO05D004110 3.2e-09 66.6 142 34.5
Cfa025063 Carpinus fangiana HOM05D000575 ORTHO05D126414 1.2e-08 64.7 122 34.4
PGSC0003DMG401014244 Solanum tuberosum HOM05D003604 ORTHO05D004110 4.6e-08 62.8 46 60.9
RcHm_v2.0_Chr4g0393431 Rosa chinensis HOM05D001291 ORTHO05D344523 3.3e-06 56.6 79 39.2
C02p37610 Brassica napus HOM05D003604 ORTHO05D004110 9.6e-06 55.1 38 68.4


User provided reference genes

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