Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g07590 Fragaria vesca HOM05D000249 ORTHO05D000206 2.0e-61 238.8 111 100.0
FvH4_1g12040 Fragaria vesca HOM05D000249 ORTHO05D000206 4.1e-59 231.1 111 96.4
FvH4_6g12310 Fragaria vesca HOM05D000249 ORTHO05D000206 7.1e-59 230.3 111 96.4
FvH4_1g22291 Fragaria vesca HOM05D000249 ORTHO05D000206 7.6e-53 210.3 105 90.5
FAN19G0987 Fragaria x ananassa HOM05D000249 ORTHO05D000206 1.7e-52 209.1 105 89.5
FAN23G2161 Fragaria x ananassa HOM05D000249 ORTHO05D000206 6.4e-52 207.2 105 89.5
RcHm_v2.0_Chr2g0116481 Rosa chinensis HOM05D000249 ORTHO05D000206 1.4e-51 206.1 103 89.3
FAN14G3092 Fragaria x ananassa HOM05D000249 ORTHO05D000206 1.3e-44 183.0 111 81.1
Prupe.6G172900 Prunus persica HOM05D000249 ORTHO05D000206 1.2e-42 176.4 103 73.8
CANSAT01G1486 Cannabis sativa HOM05D000249 ORTHO05D000206 1.5e-37 159.5 102 67.6
Cfa002755 Carpinus fangiana HOM05D000249 ORTHO05D000206 1.5e-37 159.5 104 63.5
Haze_25043 Corylus avellana HOM05D000249 ORTHO05D000206 1.5e-37 159.5 104 63.5
FAN13G3200 Fragaria x ananassa HOM05D000249 ORTHO05D000206 5.8e-37 157.5 107 72.9
Eucgr.I00322 Eucalyptus grandis HOM05D000249 ORTHO05D000206 7.6e-37 157.1 100 68.0
CAN.G65.201 Capsicum annuum HOM05D000249 ORTHO05D000206 1.7e-36 156.0 102 66.7
AT2G21950 Arabidopsis thaliana HOM05D000249 ORTHO05D000206 2.2e-36 155.6 105 66.7
AL4G11270 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 2.9e-36 155.2 105 66.7
TPR.G23751 Trifolium pratense HOM05D000249 ORTHO05D000206 3.8e-36 154.8 102 63.7
Thhalv10000172m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 4.9e-36 154.5 105 65.7
Psat5g065400 Pisum sativum HOM05D006120 ORTHO05D007913 4.9e-36 154.5 102 62.7
Aa31LG7G14700 Aethionema arabicum HOM05D000249 ORTHO05D000206 6.4e-36 154.1 100 67.0
CARHR113030 Cardamine hirsuta HOM05D000249 ORTHO05D000206 8.4e-36 153.7 105 66.7
PGR004G0795 Punica granatum HOM05D000249 ORTHO05D000206 8.4e-36 153.7 102 66.7
BcaC02g08750 Brassica carinata HOM05D000249 ORTHO05D000206 1.1e-35 153.3 105 67.6
C04p51070 Brassica napus HOM05D000249 ORTHO05D000206 1.1e-35 153.3 105 67.6
Nitab4.5_0000904g0030 Nicotiana tabacum HOM05D000249 ORTHO05D000206 1.1e-35 153.3 105 65.7
BolC4t26700H Brassica oleracea HOM05D000249 ORTHO05D000206 1.4e-35 152.9 105 67.6
Nitab4.5_0005995g0010 Nicotiana tabacum HOM05D000249 ORTHO05D000206 2.4e-35 152.1 105 64.8
Peaxi162Scf00359g00005 Petunia axillaris HOM05D000249 ORTHO05D000206 2.4e-35 152.1 102 64.7
Sp4g01030 Schrenkiella parvula HOM05D000249 ORTHO05D000206 3.2e-35 151.8 105 64.8
Oeu028524.1 Olea europaea HOM05D000249 ORTHO05D000206 4.2e-35 151.4 103 64.1
Phvul.009G139400 Phaseolus vulgaris HOM05D000249 ORTHO05D000206 4.2e-35 151.4 104 61.5
Glyma.06G146500 Glycine max HOM05D000249 ORTHO05D000206 5.4e-35 151.0 104 60.6
Nn1g05186 Nelumbo nucifera HOM05D000249 ORTHO05D000206 5.4e-35 151.0 102 64.7
arahy.Tifrunner.gnm1.ann1.F06NHS Arachis hypogaea HOM05D000249 ORTHO05D000206 7.1e-35 150.6 104 60.6
arahy.Tifrunner.gnm1.ann1.UKW8RL Arachis hypogaea HOM05D000249 ORTHO05D000206 7.1e-35 150.6 104 60.6
Lalb_Chr08g0238861 Lupinus albus HOM05D000249 ORTHO05D000206 7.1e-35 150.6 105 62.9
Ciclev10025908m.g Citrus clementina HOM05D000249 ORTHO05D000206 9.3e-35 150.2 104 58.7
Solyc04g051870.3 Solanum lycopersicum HOM05D000249 ORTHO05D000206 9.3e-35 150.2 102 64.7
Sopen04g023200 Solanum pennellii HOM05D000249 ORTHO05D000206 9.3e-35 150.2 102 64.7
PGSC0003DMG400016578 Solanum tuberosum HOM05D000249 ORTHO05D000206 1.2e-34 149.8 102 64.7
VMungo1309G0394 Vigna mungo HOM05D000249 ORTHO05D000206 1.2e-34 149.8 104 59.6
Ca_16893_v3 Cicer arietinum L. HOM05D000249 ORTHO05D000206 1.6e-34 149.4 102 60.8
COL.COLO4_11012 Corchorus olitorius HOM05D000249 ORTHO05D000206 1.6e-34 149.4 102 61.8
Gorai.007G062200 Gossypium raimondii HOM05D000249 ORTHO05D000206 1.6e-34 149.4 102 60.8
Lj4P874T30 Lonicera japonica HOM05D000249 ORTHO05D000206 1.6e-34 149.4 104 62.5
Actinidia16043 Actinidia chinensis HOM05D000249 ORTHO05D000206 2.1e-34 149.1 102 66.7
A04p16540 Brassica napus HOM05D000249 ORTHO05D000206 2.7e-34 148.7 105 65.7
AUR62003306 Chenopodium quinoa HOM05D000249 ORTHO05D000206 2.7e-34 148.7 102 61.8
Glyma.04G219400 Glycine max HOM05D000249 ORTHO05D000206 2.7e-34 148.7 104 58.7
THA.LOC104807868 Tarenaya hassleriana HOM05D000249 ORTHO05D000206 2.7e-34 148.7 100 66.0
AUR62016279 Chenopodium quinoa HOM05D000249 ORTHO05D000206 4.6e-34 147.9 102 61.8
Cc07_g16240 Coffea canephora HOM05D000249 ORTHO05D000206 6.0e-34 147.5 100 65.0
Gohir.A11G053500 Gossypium hirsutum HOM05D000249 ORTHO05D000206 6.0e-34 147.5 102 59.8
Thecc.01G112800 Theobroma cacao HOM05D000249 ORTHO05D000206 7.9e-34 147.1 102 60.8
BcaB06g27798 Brassica carinata HOM05D000249 ORTHO05D000206 1.0e-33 146.7 106 66.0
Carub.0004s0109 Capsella rubella HOM05D000249 ORTHO05D000206 1.0e-33 146.7 105 63.8
CSS0013471 Camellia sinensis var. sinensis HOM05D000249 ORTHO05D000206 1.3e-33 146.4 102 62.7
Dinv19486 Davidia involucrata HOM05D000249 ORTHO05D000206 1.3e-33 146.4 102 62.7
BraA04t17290Z Brassica rapa HOM05D000249 ORTHO05D000206 1.8e-33 146.0 105 64.8
Rhsim10G0150200 Rhododendron simsii HOM05D000249 ORTHO05D000206 1.8e-33 146.0 102 65.7
Hma1.2p1_0375F.1_g138740 Hydrangea macrophylla HOM05D000249 ORTHO05D000206 2.3e-33 145.6 102 64.7
MSTRG.23312 Avicennia marina HOM05D000249 ORTHO05D000206 3.0e-33 145.2 101 62.4
Ah.11g043070 Amaranthus hybridus HOM05D000249 ORTHO05D000206 3.9e-33 144.8 101 62.4
Duzib264G0588 Durio zibethinus HOM05D000249 ORTHO05D000206 5.1e-33 144.4 102 58.8
Gohir.D11G057000 Gossypium hirsutum HOM05D000249 ORTHO05D000206 5.1e-33 144.4 102 59.8
Lsat_1_v5_gn_1_15001 Lactuca sativa HOM05D000249 ORTHO05D000206 8.7e-33 143.7 102 61.8
Aqoxy6G00478 Aquilegia oxysepala HOM05D000249 ORTHO05D000206 1.1e-32 143.3 102 60.8
EL10Ac6g14755 Beta vulgaris HOM05D000249 ORTHO05D000206 1.1e-32 143.3 102 63.7
QL06p032133 Quercus lobata HOM05D000249 ORTHO05D000206 1.1e-32 143.3 102 59.8
QL09p049197 Quercus lobata HOM05D003241 ORTHO05D003812 1.1e-32 143.3 102 59.8
TWI74G1430 Tripterygium wilfordii HOM05D000249 ORTHO05D000206 1.1e-32 143.3 97 60.8
Atru.chr12.1168 Acer truncatum HOM05D000249 ORTHO05D000206 4.3e-32 141.4 104 57.7
Nn5g28908 Nelumbo nucifera HOM05D000249 ORTHO05D000206 4.3e-32 141.4 102 61.8
CAN.G767.7 Capsicum annuum HOM05D000249 ORTHO05D000206 5.6e-32 141.0 102 60.8
HanXRQChr15g0484381 Helianthus annuus HOM05D000249 ORTHO05D000206 5.6e-32 141.0 99 62.6
unitig_899.g14606 Utricularia gibba HOM05D000249 ORTHO05D000206 5.6e-32 141.0 101 59.4
Sc10g0007200 Simmondsia chinensis HOM05D000249 ORTHO05D000206 7.4e-32 140.6 104 58.7
Lj1g0013672 Lotus japonicus HOM05D000249 ORTHO05D000206 1.3e-31 139.8 102 57.8
CDE05G1217 Ceratophyllum demersum HOM05D000249 ORTHO05D000206 2.1e-31 139.0 103 55.3
Manes.13G076112 Manihot esculenta HOM05D000249 ORTHO05D000206 2.8e-31 138.7 98 57.1
Medtr3g094850 Medicago truncatula HOM05D000249 ORTHO05D000206 2.8e-31 138.7 102 57.8
DCAR_011455 Daucus carota HOM05D000249 ORTHO05D000206 3.7e-31 138.3 102 58.8
SGA_v2.0_scaffold51G18753 Striga asiatica HOM05D000249 ORTHO05D000206 1.1e-30 136.7 101 58.4
Migut.H02437 Erythranthe guttata HOM05D000249 ORTHO05D000206 4.0e-30 134.8 102 57.8
PSO675G5947 Papaver somniferum HOM05D000249 ORTHO05D000206 4.0e-30 134.8 102 57.8
CiPaw.03G134300 Carya illinoinensis HOM05D000249 ORTHO05D000206 9.0e-30 133.7 102 53.9
ECA238G1420 Erigeron canadensis HOM05D000249 ORTHO05D000206 2.0e-29 132.5 99 56.6
TAR381G1098 Trochodendron aralioides HOM05D000249 ORTHO05D000206 2.0e-29 132.5 104 59.6
CDE05G2401 Ceratophyllum demersum HOM05D000249 ORTHO05D000206 2.6e-29 132.1 103 53.4
MBI05_g43694_MAGBIO Magnolia biondii HOM05D000249 ORTHO05D000206 3.4e-29 131.7 102 53.9
Sabra07G0068100 Salix brachista HOM05D000249 ORTHO05D000206 5.8e-29 131.0 98 57.1
SEGI_29572 Sequoiadendron giganteum HOM05D000249 ORTHO05D000206 5.8e-29 131.0 102 54.9
PSO541G4415 Papaver somniferum HOM05D000249 ORTHO05D000206 1.3e-28 129.8 104 54.8
Potri.007G081100 Populus trichocarpa HOM05D000249 ORTHO05D000206 1.3e-28 129.8 98 55.1
MBI05_g43695_MAGBIO Magnolia biondii HOM05D000249 ORTHO05D000206 2.9e-28 128.6 102 52.9
GSVIVG01022227001 Vitis vinifera HOM05D000249 ORTHO05D000206 2.9e-28 128.6 102 59.8
CSS0028906 Camellia sinensis var. sinensis HOM05D000249 ORTHO05D000206 1.4e-27 126.3 93 59.1
ATR0564G264 Amborella trichopoda HOM05D000249 ORTHO05D000206 2.4e-27 125.6 115 49.6
Os07g0673700 Oryza sativa ssp. japonica HOM05D000249 ORTHO05D000206 1.6e-26 122.9 106 50.9
vmacro23033 Vaccinium macrocarpon HOM05D000249 ORTHO05D000206 6.7e-25 117.5 86 65.1
Zm00001eb111340 Zea mays HOM05D000249 ORTHO05D000206 7.4e-24 114.0 107 46.7
CANSAT01G0241 Cannabis sativa HOM05D000249 ORTHO05D000206 2.6e-21 105.5 100 45.0
PSO675G8073 Papaver somniferum HOM05D000249 ORTHO05D000206 6.5e-20 100.9 104 48.1
DCAR_020950 Daucus carota HOM05D000249 ORTHO05D000206 1.2e-18 96.7 102 48.0
FAN02G4132 Fragaria x ananassa HOM05D000249 ORTHO05D000206 2.7e-18 95.5 110 50.0
HPP92_016850 Vanilla planifolia HOM05D000249 ORTHO05D000206 2.5e-16 89.0 99 44.4
Cc07_g16260 Coffea canephora HOM05D000249 ORTHO05D000206 1.6e-15 86.3 100 50.0
FAN05G0742 Fragaria x ananassa HOM05D000249 ORTHO05D000206 1.4e-14 83.2 46 80.4
FAN26G1361 Fragaria x ananassa HOM05D000249 ORTHO05D000206 3.4e-13 78.6 38 86.8
Eucgr.E03295 Eucalyptus grandis HOM05D000249 ORTHO05D000206 1.7e-12 76.3 102 36.3
Cpa.g.sc191.3 Carica papaya HOM05D000249 ORTHO05D000206 2.9e-12 75.5 58 48.3
Mapoly0002s0290 Marchantia polymorpha HOM05D000667 ORTHO05D000206 6.5e-12 74.3 102 33.3
Carub.0007s0142 Capsella rubella HOM05D000249 ORTHO05D000206 1.6e-10 69.7 107 39.3
Lj4P930T42 Lonicera japonica HOM05D000249 ORTHO05D000206 3.6e-10 68.6 61 49.2
FAN24G0552 Fragaria x ananassa HOM05D000249 ORTHO05D000206 1.8e-09 66.2 37 75.7
THA.LOC104807689 Tarenaya hassleriana HOM05D000249 ORTHO05D000206 3.0e-09 65.5 103 31.1
FvH4_2g03700 Fragaria vesca HOM05D000249 ORTHO05D000206 3.9e-09 65.1 37 73.0
THA.LOC109116437 Tarenaya hassleriana HOM05D000249 ORTHO05D000206 5.1e-09 64.7 103 37.9
BcaNung05812 Brassica carinata HOM05D000249 ORTHO05D000206 8.8e-09 63.9 105 38.1
BolC1t00061H Brassica oleracea HOM05D000249 ORTHO05D000206 8.8e-09 63.9 105 38.1
AL2G16030 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 1.3e-07 60.1 90 35.6
Aa31sc1887G20 Aethionema arabicum HOM05D000249 ORTHO05D000206 3.7e-07 58.5 83 33.7
BolC1t02703H Brassica oleracea HOM05D000249 ORTHO05D000206 3.7e-07 58.5 80 31.2
Aa31sc1961G10 Aethionema arabicum HOM05D000249 ORTHO05D000206 6.3e-07 57.8 72 33.3
Aa31sc2065G10 Aethionema arabicum HOM05D000249 ORTHO05D000206 6.3e-07 57.8 72 33.3
C08p38390 Brassica napus HOM05D000249 ORTHO05D000206 6.3e-07 57.8 90 38.9
Atru.chr7.1152 Acer truncatum HOM05D000249 ORTHO05D000206 1.1e-06 57.0 50 40.0
Carub.0003s2781 Capsella rubella HOM05D000249 ORTHO05D000206 1.1e-06 57.0 73 31.5
BcaC09g50224 Brassica carinata HOM05D000249 ORTHO05D000206 1.4e-06 56.6 106 28.3
BcaC08g46037 Brassica carinata HOM05D000249 ORTHO05D013466 1.8e-06 56.2 89 39.3
Aa31LG3G12330 Aethionema arabicum HOM05D000249 ORTHO05D000206 2.4e-06 55.8 90 31.1
C06p38620 Brassica napus HOM05D000249 ORTHO05D013466 4.1e-06 55.1 95 31.6
SalBow8G4049 Salvia bowleyana HOM05D000249 ORTHO05D000206 4.1e-06 55.1 66 43.9
BcaC07g40842 Brassica carinata HOM05D000249 ORTHO05D000206 6.9e-06 54.3 90 37.8


User provided reference genes

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