Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g07360 Fragaria vesca HOM05D007083 ORTHO05D008801 3.2e-119 433.3 226 100.0
FAN24G0977 Fragaria x ananassa HOM05D007083 ORTHO05D008801 1.4e-103 381.3 202 96.0
FAN20G1975 Fragaria x ananassa HOM05D007083 ORTHO05D008801 1.5e-100 371.3 203 95.6
RcHm_v2.0_Chr6g0259961 Rosa chinensis HOM05D007083 ORTHO05D008801 1.2e-78 298.5 202 76.7
Prupe.8G019300 Prunus persica HOM05D007083 ORTHO05D008801 4.3e-55 220.3 213 53.1
Manes.15G145600 Manihot esculenta HOM05D007083 ORTHO05D008801 2.5e-47 194.5 184 51.1
QL11p039208 Quercus lobata HOM05D007083 ORTHO05D008801 7.3e-47 193.0 225 48.4
Gohir.D12G042300 Gossypium hirsutum HOM05D007083 ORTHO05D008801 4.7e-46 190.3 209 47.4
Gorai.008G044300 Gossypium raimondii HOM05D007083 ORTHO05D008801 6.2e-46 189.9 209 47.8
Gohir.A12G030100 Gossypium hirsutum HOM05D007083 ORTHO05D008801 1.4e-45 188.7 209 47.8
Cfa004946 Carpinus fangiana HOM05D007083 ORTHO05D008801 3.1e-45 187.6 224 49.6
Duzib052G0394 Durio zibethinus HOM05D007083 ORTHO05D008801 7.5e-44 183.0 186 48.4
CiPaw.06G139300 Carya illinoinensis HOM05D007083 ORTHO05D008801 9.9e-44 182.6 229 45.0
Thecc.02G028500 Theobroma cacao HOM05D007083 ORTHO05D008801 9.9e-44 182.6 217 43.8
Haze_02465 Corylus avellana HOM05D007083 ORTHO05D008801 2.2e-43 181.4 158 55.7
CANSAT25G2501 Cannabis sativa HOM05D007083 ORTHO05D008801 6.0e-41 173.3 218 44.5
Cpa.g.sc109.26 Carica papaya HOM05D007083 ORTHO05D008801 1.0e-40 172.6 247 40.1
Sabra18G0050700 Salix brachista HOM05D007083 ORTHO05D008801 1.5e-39 168.7 222 41.9
CSS0008892 Camellia sinensis var. sinensis HOM05D007083 ORTHO05D008801 4.3e-39 167.2 216 42.1
CSS0024065 Camellia sinensis var. sinensis HOM05D007083 ORTHO05D008801 4.3e-39 167.2 216 42.1
Rhsim05G0078900 Rhododendron simsii HOM05D007083 ORTHO05D008801 4.3e-39 167.2 207 44.0
PGR042G0769 Punica granatum HOM05D007083 ORTHO05D008801 7.3e-39 166.4 217 43.3
GSVIVG01029769001 Vitis vinifera HOM05D007083 ORTHO05D008801 1.6e-38 165.2 167 48.5
Potri.004G147700 Populus trichocarpa HOM05D007083 ORTHO05D008801 2.8e-38 164.5 195 44.1
CARHR106000 Cardamine hirsuta HOM05D007083 ORTHO05D008801 3.6e-38 164.1 162 49.4
Lj2P412T37 Lonicera japonica HOM05D007083 ORTHO05D008801 4.7e-38 163.7 210 44.3
Dinv23578 Davidia involucrata HOM05D007083 ORTHO05D008801 6.2e-38 163.3 224 42.0
AT2G15630 Arabidopsis thaliana HOM05D007083 ORTHO05D008801 1.8e-37 161.8 182 47.3
Eucgr.J00091 Eucalyptus grandis HOM05D007083 ORTHO05D008801 2.4e-37 161.4 215 41.9
TWI31G0787 Tripterygium wilfordii HOM05D007083 ORTHO05D008801 2.4e-37 161.4 177 45.8
Sed0019239 Sechium edule HOM05D007083 ORTHO05D008801 6.8e-37 159.8 152 52.0
arahy.Tifrunner.gnm1.ann1.JD2ZC9 Arachis hypogaea HOM05D007083 ORTHO05D008801 8.9e-37 159.5 210 41.9
BcaB03g14591 Brassica carinata HOM05D007083 ORTHO05D008801 5.8e-36 156.8 198 44.4
Atru.chr5.2875 Acer truncatum HOM05D007083 ORTHO05D008801 1.7e-35 155.2 147 49.7
Phvul.001G085800 Phaseolus vulgaris HOM05D007083 ORTHO05D008801 2.2e-35 154.8 192 46.9
CsaV3_7G010110 Cucumis sativus L. HOM05D007083 ORTHO05D008801 2.9e-35 154.5 201 42.8
VMungo1383G2401 Vigna mungo HOM05D007083 ORTHO05D008801 3.8e-35 154.1 190 46.3
arahy.Tifrunner.gnm1.ann1.CNDX61 Arachis hypogaea HOM05D007083 ORTHO05D008801 4.9e-35 153.7 211 40.3
A07p05120 Brassica napus HOM05D007083 ORTHO05D008801 6.4e-35 153.3 162 47.5
MELO3C018417.2 Cucumis melo HOM05D007083 ORTHO05D008801 1.9e-34 151.8 192 44.8
BraA07t28306Z Brassica rapa HOM05D007083 ORTHO05D008801 2.4e-34 151.4 162 46.9
AL3G47400 Arabidopsis lyrata HOM05D007083 ORTHO05D008801 5.4e-34 150.2 167 46.7
Ciclev10030406m.g Citrus clementina HOM05D007083 ORTHO05D008801 1.6e-33 148.7 164 45.7
Sp3g28900 Schrenkiella parvula HOM05D007083 ORTHO05D008801 1.6e-33 148.7 166 45.2
Glyma.12G048300 Glycine max HOM05D007083 ORTHO05D008801 2.7e-33 147.9 194 43.8
BcaC06g36074 Brassica carinata HOM05D007083 ORTHO05D008801 3.5e-33 147.5 184 44.0
C07p08180 Brassica napus HOM05D007083 ORTHO05D008801 3.5e-33 147.5 184 44.0
BolC7t41234H Brassica oleracea HOM05D007083 ORTHO05D008801 3.5e-33 147.5 184 44.0
Atru.chr13.1400 Acer truncatum HOM05D007083 ORTHO05D008801 6.0e-33 146.7 202 42.1
Cc02_g18190 Coffea canephora HOM05D007083 ORTHO05D008801 3.0e-32 144.4 192 40.6
Sopen01g051260 Solanum pennellii HOM05D007083 ORTHO05D008801 3.0e-32 144.4 182 42.3
PGSC0003DMG400025930 Solanum tuberosum HOM05D007083 ORTHO05D008801 6.6e-32 143.3 182 41.8
CAN.G322.86 Capsicum annuum HOM05D007083 ORTHO05D008801 1.9e-31 141.7 192 42.7
Medtr4g068360 Medicago truncatula HOM05D007083 ORTHO05D008801 1.9e-31 141.7 177 44.1
Potri.009G109001 Populus trichocarpa HOM05D007083 ORTHO05D008801 1.9e-31 141.7 158 43.7
EL10Ac9g21792 Beta vulgaris HOM05D007083 ORTHO05D008801 3.3e-31 141.0 195 37.9
AUR62011398 Chenopodium quinoa HOM05D007083 ORTHO05D008801 5.6e-31 140.2 187 36.9
Solyc01g109060.4 Solanum lycopersicum HOM05D007083 ORTHO05D008801 1.2e-30 139.0 182 41.8
Aa31LG8G13290 Aethionema arabicum HOM05D007083 ORTHO05D008801 1.6e-30 138.7 163 42.9
QL11p039212 Quercus lobata HOM05D007083 ORTHO05D008801 1.6e-30 138.7 225 40.0
Lsat_1_v5_gn_0_45320 Lactuca sativa HOM05D007083 ORTHO05D008801 3.6e-30 137.5 189 41.3
Lsat_1_v5_gn_5_117460 Lactuca sativa HOM05D007083 ORTHO05D008801 3.6e-30 137.5 189 41.3
MSTRG.5378 Avicennia marina HOM05D007083 ORTHO05D008801 6.2e-30 136.7 209 39.2
Sabra04G0098000 Salix brachista HOM05D007083 ORTHO05D008801 1.1e-29 136.0 132 48.5
AUR62016660 Chenopodium quinoa HOM05D007083 ORTHO05D008801 2.4e-29 134.8 166 39.2
Lj3g0002320 Lotus japonicus HOM05D007083 ORTHO05D008801 2.4e-29 134.8 202 42.1
Sc18g0004860 Simmondsia chinensis HOM05D007083 ORTHO05D008801 2.4e-29 134.8 183 37.7
TAR369G0752 Trochodendron aralioides HOM05D007083 ORTHO05D008801 2.4e-29 134.8 162 43.2
HanXRQChr12g0374971 Helianthus annuus HOM05D007083 ORTHO05D008801 4.0e-29 134.0 208 38.0
Nitab4.5_0001401g0200 Nicotiana tabacum HOM05D007083 ORTHO05D008801 5.3e-29 133.7 181 40.3
ClCG02G005520 Citrullus lanatus HOM05D007083 ORTHO05D008801 6.9e-29 133.3 167 41.9
Ca_20820_v3 Cicer arietinum L. HOM05D007083 ORTHO05D008801 2.0e-28 131.7 230 39.1
Sc18g0004780 Simmondsia chinensis HOM05D007083 ORTHO05D008801 2.0e-28 131.7 169 37.9
DCAR_003627 Daucus carota HOM05D007083 ORTHO05D008801 4.4e-28 130.6 166 41.0
SHI08173 Sapria himalayana HOM05D007083 ORTHO05D008801 9.9e-28 129.4 185 35.7
ECA236G1626 Erigeron canadensis HOM05D007083 ORTHO05D008801 6.4e-27 126.7 167 38.9
MBI19_g17433_MAGBIO Magnolia biondii HOM05D007083 ORTHO05D008801 1.1e-26 125.9 208 38.0
Thhalv10022592m.g Eutrema salsugineum HOM05D007083 ORTHO05D008801 2.4e-26 124.8 165 39.4
Ah.01g019870 Amaranthus hybridus HOM05D007083 ORTHO05D008801 1.2e-25 122.5 162 37.7
Nn7g35939 Nelumbo nucifera HOM05D007083 ORTHO05D008801 1.2e-25 122.5 155 41.3
THA.LOC104819595 Tarenaya hassleriana HOM05D007083 ORTHO05D008801 1.0e-24 119.4 153 45.1
Glyma.11G123700 Glycine max HOM05D007083 ORTHO05D008801 4.3e-23 114.0 190 38.9
SalBow3G3241 Salvia bowleyana HOM05D001193 ORTHO05D001016 4.3e-23 114.0 179 37.4
Actinidia17838 Actinidia chinensis HOM05D007083 ORTHO05D008801 1.6e-22 112.1 193 36.8
COL.COLO4_17774 Corchorus olitorius HOM05D007083 ORTHO05D008801 8.1e-22 109.8 172 39.0
ATR0598G052 Amborella trichopoda HOM05D007083 ORTHO05D008801 1.4e-21 109.0 166 33.7
RcHm_v2.0_Chr2g0124591 Rosa chinensis HOM05D007083 ORTHO05D008801 1.7e-19 102.1 59 79.7
HPP92_019625 Vanilla planifolia HOM05D007083 ORTHO05D008801 2.4e-18 98.2 166 37.3
PSO384G4964 Papaver somniferum HOM05D007083 ORTHO05D008801 6.0e-17 93.6 214 32.2
Aqoxy7G03503 Aquilegia oxysepala HOM05D007083 ORTHO05D008801 4.3e-15 87.4 143 35.0
PSO339G4029 Papaver somniferum HOM05D007083 ORTHO05D008801 7.4e-15 86.7 187 31.0
Migut.N01212 Erythranthe guttata HOM05D007083 ORTHO05D008801 1.5e-12 79.0 206 33.5
Manes.10G064000 Manihot esculenta HOM05D007496 ORTHO05D009479 1.0e-08 66.2 189 33.3
TPR.G10240 Trifolium pratense HOM05D007083 ORTHO05D008801 2.3e-08 65.1 62 40.3
Haze_02434 Corylus avellana HOM05D007675 ORTHO05D009699 1.5e-07 62.4 191 30.4
RcHm_v2.0_Chr6g0266771 Rosa chinensis HOM05D007083 ORTHO05D008801 2.5e-07 61.6 31 90.3
RcHm_v2.0_Chr6g0260391 Rosa chinensis HOM05D007083 ORTHO05D008801 5.6e-07 60.5 31 87.1
RcHm_v2.0_Chr6g0260661 Rosa chinensis HOM05D007083 ORTHO05D008801 5.6e-07 60.5 31 87.1
RcHm_v2.0_Chr6g0260531 Rosa chinensis HOM05D007083 ORTHO05D008801 1.3e-06 59.3 31 83.9
RcHm_v2.0_Chr6g0260161 Rosa chinensis HOM05D007083 ORTHO05D008801 2.1e-06 58.5 31 83.9
vmacro17185 Vaccinium macrocarpon HOM05D007496 ORTHO05D009479 2.8e-06 58.2 138 34.1
Sopen02g005740 Solanum pennellii HOM05D007496 ORTHO05D009479 4.8e-06 57.4 169 33.1
PGSC0003DMG401017024 Solanum tuberosum HOM05D007496 ORTHO05D009479 6.2e-06 57.0 169 32.5
PGSC0003DMG402017024 Solanum tuberosum HOM05D007496 ORTHO05D009479 6.2e-06 57.0 169 32.5
Cfa004966 Carpinus fangiana HOM05D007675 ORTHO05D009699 8.2e-06 56.6 189 30.2
Solyc02g021270.3 Solanum lycopersicum HOM05D007496 ORTHO05D009479 8.2e-06 56.6 169 32.5


User provided reference genes

Program Settings