Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g07110 Fragaria vesca HOM05D006662 ORTHO05D008378 1.4e-113 412.9 201 100.0
FAN15G0063 Fragaria x ananassa HOM05D006662 ORTHO05D008378 3.8e-111 404.8 201 97.5
FAN20G1592 Fragaria x ananassa HOM05D006662 ORTHO05D008378 9.3e-110 400.2 201 96.5
RcHm_v2.0_Chr6g0259611 Rosa chinensis HOM05D006662 ORTHO05D008378 4.2e-102 374.8 203 92.1
Prupe.8G113800 Prunus persica HOM05D006662 ORTHO05D008378 4.2e-86 321.6 214 75.7
MD05G1073200 Malus domestica HOM05D006662 ORTHO05D008378 8.8e-84 313.9 214 73.4
CiPaw.05G058200 Carya illinoinensis HOM05D006662 ORTHO05D008378 9.4e-78 293.9 204 71.1
MD10G1087700 Malus domestica HOM05D006662 ORTHO05D008378 1.5e-75 286.6 211 69.7
Cfa004939 Carpinus fangiana HOM05D006662 ORTHO05D008378 9.4e-70 267.3 205 65.9
ClCG09G017640 Citrullus lanatus HOM05D006662 ORTHO05D008378 4.7e-69 265.0 208 64.4
Sed0006883 Sechium edule HOM05D006662 ORTHO05D008378 1.8e-68 263.1 208 64.4
PGR142G1799 Punica granatum HOM05D006662 ORTHO05D008378 5.2e-68 261.5 200 62.0
Sed0017443 Sechium edule HOM05D006662 ORTHO05D008378 8.8e-68 260.8 201 65.2
TWI75G0095 Tripterygium wilfordii HOM05D006662 ORTHO05D008378 1.5e-67 260.0 217 62.2
Glyma.02G136700 Glycine max HOM05D006662 ORTHO05D008378 2.6e-67 259.2 203 61.6
Thecc.02G093600 Theobroma cacao HOM05D006662 ORTHO05D008378 2.6e-67 259.2 209 63.6
VMungo0251G2580 Vigna mungo HOM05D006662 ORTHO05D008378 7.5e-67 257.7 201 64.2
Potri.009G108200 Populus trichocarpa HOM05D006662 ORTHO05D008378 1.7e-66 256.5 205 61.0
GSVIVG01031844001 Vitis vinifera HOM05D006662 ORTHO05D008378 2.8e-66 255.8 175 72.0
Manes.17G095800 Manihot esculenta HOM05D006662 ORTHO05D008378 3.7e-66 255.4 209 60.8
MELO3C021923.2 Cucumis melo HOM05D006662 ORTHO05D008378 4.8e-66 255.0 218 64.2
Haze_02471 Corylus avellana HOM05D006662 ORTHO05D008378 8.3e-66 254.2 228 59.2
QL11p039030 Quercus lobata HOM05D006662 ORTHO05D008378 1.1e-65 253.8 211 61.6
QL11p040314 Quercus lobata HOM05D006662 ORTHO05D008378 1.4e-65 253.4 167 71.3
CANSAT25G1076 Cannabis sativa HOM05D006662 ORTHO05D008378 1.8e-65 253.1 202 65.8
Eucgr.I01209 Eucalyptus grandis HOM05D006662 ORTHO05D008378 3.1e-65 252.3 216 60.2
CsaV3_2G014240 Cucumis sativus L. HOM05D006662 ORTHO05D008378 9.1e-65 250.8 208 62.5
TWI79G0535 Tripterygium wilfordii HOM05D006662 ORTHO05D008378 7.7e-64 247.7 172 69.8
Lalb_Chr05g0218931 Lupinus albus HOM05D006662 ORTHO05D008378 1.0e-63 247.3 203 60.6
Lj4g0000402 Lotus japonicus HOM05D006662 ORTHO05D008378 1.3e-63 246.9 201 61.7
TPR.G23518 Trifolium pratense HOM05D006662 ORTHO05D008378 1.3e-63 246.9 206 58.3
Hma1.2p1_0584F.1_g183200 Hydrangea macrophylla HOM05D006662 ORTHO05D008378 1.7e-63 246.5 209 58.9
TAR625G0716 Trochodendron aralioides HOM05D006662 ORTHO05D008378 1.7e-63 246.5 193 62.2
arahy.Tifrunner.gnm1.ann1.XIH6CG Arachis hypogaea HOM05D006662 ORTHO05D008378 2.3e-63 246.1 206 61.2
Cpa.g.sc62.73 Carica papaya HOM05D006662 ORTHO05D008378 2.3e-63 246.1 210 60.0
arahy.Tifrunner.gnm1.ann1.WYH7K2 Arachis hypogaea HOM05D006662 ORTHO05D008378 2.9e-63 245.7 206 61.2
CSS0011742 Camellia sinensis var. sinensis HOM05D006662 ORTHO05D008378 1.1e-62 243.8 208 60.1
Gohir.D12G026500 Gossypium hirsutum HOM05D006662 ORTHO05D008378 1.1e-62 243.8 207 59.9
Gohir.A12G027000 Gossypium hirsutum HOM05D006662 ORTHO05D008378 2.5e-62 242.7 209 59.8
Oeu034074.1 Olea europaea HOM05D006662 ORTHO05D008378 2.5e-62 242.7 171 66.7
Lsat_1_v5_gn_7_87521 Lactuca sativa HOM05D006662 ORTHO05D008378 3.3e-62 242.3 182 64.8
Nitab4.5_0013034g0030 Nicotiana tabacum HOM05D006662 ORTHO05D008378 4.2e-62 241.9 169 66.3
Nitab4.5_0001401g0110 Nicotiana tabacum HOM05D006662 ORTHO05D008378 5.5e-62 241.5 169 66.3
Solyc01g108910.4 Solanum lycopersicum HOM05D006662 ORTHO05D008378 5.5e-62 241.5 195 61.0
Sopen01g051110 Solanum pennellii HOM05D006662 ORTHO05D008378 9.5e-62 240.7 195 60.5
THA.LOC104807344 Tarenaya hassleriana HOM05D006662 ORTHO05D008378 1.2e-61 240.4 212 58.0
Ciclev10029278m.g Citrus clementina HOM05D006662 ORTHO05D008378 1.6e-61 240.0 181 64.1
Oeu034073.1 Olea europaea HOM05D006662 ORTHO05D008378 1.6e-61 240.0 171 65.5
Ca_18646_v3 Cicer arietinum L. HOM05D006662 ORTHO05D008378 2.1e-61 239.6 207 59.4
MSTRG.16773 Avicennia marina HOM05D006662 ORTHO05D008378 2.8e-61 239.2 200 58.0
Peaxi162Scf00016g01334 Petunia axillaris HOM05D006662 ORTHO05D008378 2.8e-61 239.2 181 63.5
Glyma.07G208750 Glycine max HOM05D006662 ORTHO05D000003 6.1e-61 238.0 190 60.5
Sp3g29170 Schrenkiella parvula HOM05D006662 ORTHO05D008378 8.0e-61 237.7 209 61.7
COL.COLO4_11735 Corchorus olitorius HOM05D006662 ORTHO05D008378 1.0e-60 237.3 203 58.6
Sabra09G0082500 Salix brachista HOM05D006662 ORTHO05D008378 1.4e-60 236.9 193 59.6
PGSC0003DMG400025927 Solanum tuberosum HOM05D006662 ORTHO05D008378 1.4e-60 236.9 173 63.6
Phvul.003G295900 Phaseolus vulgaris HOM05D006662 ORTHO05D008378 2.3e-60 236.1 202 60.9
TAR381G0443 Trochodendron aralioides HOM05D006662 ORTHO05D008378 5.2e-60 235.0 201 58.2
BcaC01g03048 Brassica carinata HOM05D006662 ORTHO05D008378 6.8e-60 234.6 203 61.6
C03p56690 Brassica napus HOM05D006662 ORTHO05D008378 6.8e-60 234.6 203 61.6
BolC3t17953H Brassica oleracea HOM05D006662 ORTHO05D008378 6.8e-60 234.6 203 61.6
Psat7g120680 Pisum sativum HOM05D006662 ORTHO05D008378 8.9e-60 234.2 201 57.7
HanXRQChr16g0505251 Helianthus annuus HOM05D006662 ORTHO05D008378 1.5e-59 233.4 176 63.1
Lalb_Chr16g0384501 Lupinus albus HOM05D006662 ORTHO05D008378 2.0e-59 233.0 205 59.0
Ah.01g019950 Amaranthus hybridus HOM05D006662 ORTHO05D008378 2.6e-59 232.6 217 55.8
A03p45640 Brassica napus HOM05D006662 ORTHO05D008378 2.6e-59 232.6 206 61.7
Ciclev10029277m.g Citrus clementina HOM05D006662 ORTHO05D008378 2.6e-59 232.6 178 64.0
MBI16_g19891_MAGBIO Magnolia biondii HOM05D006662 ORTHO05D008378 3.4e-59 232.3 181 59.7
BraA03t13696Z Brassica rapa HOM05D006662 ORTHO05D008378 1.3e-58 230.3 206 61.2
Carub.0003s2977 Capsella rubella HOM05D006662 ORTHO05D008378 1.3e-58 230.3 207 59.9
Gorai.008G026800 Gossypium raimondii HOM05D006662 ORTHO05D008378 1.7e-58 229.9 234 53.4
Manes.15G144700 Manihot esculenta HOM05D006662 ORTHO05D008378 1.7e-58 229.9 165 64.8
unitig_60.g25450 Utricularia gibba HOM05D006662 ORTHO05D008378 2.8e-58 229.2 179 60.9
DCAR_022073 Daucus carota HOM05D006662 ORTHO05D008378 4.9e-58 228.4 180 62.2
Thhalv10022827m.g Eutrema salsugineum HOM05D006662 ORTHO05D008378 6.3e-58 228.0 210 58.6
Atru.chr5.2838 Acer truncatum HOM05D006662 ORTHO05D008378 8.3e-58 227.6 165 66.7
CARHR106220 Cardamine hirsuta HOM05D006662 ORTHO05D008378 1.1e-57 227.3 172 68.0
MSTRG.20127 Avicennia marina HOM05D006662 ORTHO05D008378 1.4e-57 226.9 212 56.1
AL3G47680 Arabidopsis lyrata HOM05D006662 ORTHO05D008378 1.8e-57 226.5 206 61.2
AT2G15890 Arabidopsis thaliana HOM05D006662 ORTHO05D008378 1.8e-57 226.5 206 60.7
Cc02_g18370 Coffea canephora HOM05D006662 ORTHO05D008378 3.1e-57 225.7 188 59.0
BcaB08g34616 Brassica carinata HOM05D006662 ORTHO05D008378 4.1e-57 225.3 170 67.6
Sc18g0004870 Simmondsia chinensis HOM05D006662 ORTHO05D008378 4.1e-57 225.3 200 56.0
Aa31LG8G13410 Aethionema arabicum HOM05D006662 ORTHO05D008378 7.0e-57 224.6 215 57.7
Nn6g32129 Nelumbo nucifera HOM05D006662 ORTHO05D008378 9.2e-57 224.2 203 56.2
CDE04G2620 Ceratophyllum demersum HOM05D006662 ORTHO05D008378 1.6e-56 223.4 208 55.8
AUR62011410 Chenopodium quinoa HOM05D006662 ORTHO05D008378 4.5e-56 221.9 200 53.5
AUR62016649 Chenopodium quinoa HOM05D006662 ORTHO05D008378 1.3e-55 220.3 202 53.5
CDE02G2985 Ceratophyllum demersum HOM05D006662 ORTHO05D008378 1.7e-55 219.9 208 54.8
ECA234G3259 Erigeron canadensis HOM05D006662 ORTHO05D008378 1.9e-54 216.5 189 56.6
Oeu057667.1 Olea europaea HOM05D006662 ORTHO05D008378 1.9e-54 216.5 169 62.7
Medtr4g087160 Medicago truncatula HOM05D006662 ORTHO05D008378 3.3e-54 215.7 166 61.4
SGA_v2.0_scaffold32G13129 Striga asiatica HOM05D006662 ORTHO05D008378 2.8e-53 212.6 187 57.8
ECA236G2218 Erigeron canadensis HOM05D001803 ORTHO05D001686 4.7e-53 211.8 176 58.0
PSO541G1188 Papaver somniferum HOM05D006662 ORTHO05D008378 2.3e-52 209.5 209 52.2
Duzib132G0812 Durio zibethinus HOM05D006662 ORTHO05D008378 1.2e-51 207.2 200 53.5
ATR0733G082 Amborella trichopoda HOM05D006662 ORTHO05D008378 3.4e-51 205.7 185 56.2
SalBow6G2487 Salvia bowleyana HOM05D006662 ORTHO05D008378 3.4e-51 205.7 229 49.3
Migut.B00297 Erythranthe guttata HOM05D006662 ORTHO05D008378 2.2e-50 203.0 153 61.4
PSO675G4443 Papaver somniferum HOM05D006662 ORTHO05D008378 1.4e-49 200.3 209 50.7
EL10Ac9g21803 Beta vulgaris HOM05D006662 ORTHO05D008378 3.3e-46 189.1 205 50.7
Aqoxy6G00923 Aquilegia oxysepala HOM05D006662 ORTHO05D008378 4.3e-46 188.7 179 53.6
Hund06197 Selenicereus undatus HOM05D006662 ORTHO05D008378 5.6e-38 161.8 169 49.7
HPP92_017773 Vanilla planifolia HOM05D006662 ORTHO05D008378 2.9e-34 149.4 198 44.9
SEGI_00093 Sequoiadendron giganteum HOM05D006662 ORTHO05D008378 8.3e-34 147.9 178 46.6
Lj9A364T65 Lonicera japonica HOM05D006662 ORTHO05D008378 3.2e-33 146.0 219 41.1
Dinv23602 Davidia involucrata HOM05D000546 ORTHO05D000398 9.2e-33 144.4 114 61.4
Actinidia00472 Actinidia chinensis HOM05D006662 ORTHO05D008378 1.9e-30 136.7 171 44.4
Zm00001eb058550 Zea mays HOM05D006662 ORTHO05D008378 4.3e-30 135.6 179 40.8
Zm00001eb214110 Zea mays HOM05D006662 ORTHO05D008378 2.1e-29 133.3 219 37.4
Duzib052G0855 Durio zibethinus HOM05D006662 ORTHO05D008378 1.3e-23 114.0 70 71.4
SMO351G0555 Selaginella moellendorffii HOM05D006662 ORTHO05D008378 3.0e-23 112.8 181 34.3
Pp3c25_14850 Physcomitrium patens HOM05D006662 ORTHO05D008378 6.6e-23 111.7 214 33.2
Peaxi162Scf00068g00075 Petunia axillaris HOM05D006662 ORTHO05D008378 2.1e-21 106.7 89 58.4
AagrBONN_evm.TU.Sc2ySwM_117.2125 Anthoceros agrestis HOM05D006662 ORTHO05D008378 3.1e-20 102.8 196 33.2
Mapoly0184s0005 Marchantia polymorpha HOM05D006662 ORTHO05D008378 7.6e-19 98.2 215 29.8
HanXRQChr16g0505241 Helianthus annuus HOM05D000009 ORTHO05D000008 1.9e-17 93.6 103 48.5
Os03g0765500 Oryza sativa ssp. japonica HOM05D006662 ORTHO05D008378 3.5e-16 89.4 128 39.1
Peaxi162Scf00140g10022 Petunia axillaris HOM05D006662 ORTHO05D008378 8.7e-15 84.7 101 45.5
Rhsim11G0170000 Rhododendron simsii HOM05D006662 ORTHO05D008378 4.6e-08 62.4 105 34.3
Cfa020839 Carpinus fangiana HOM05D006662 ORTHO05D008378 1.5e-06 57.4 49 59.2


User provided reference genes

Program Settings