Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g07021 Fragaria vesca HOM05D005562 ORTHO05D007785 7.4e-228 793.5 394 100.0
FAN27G1497 Fragaria x ananassa HOM05D005562 ORTHO05D007785 4.7e-222 774.2 394 98.2
RcHm_v2.0_Chr6g0259381 Rosa chinensis HOM05D005562 ORTHO05D007785 1.8e-213 745.7 394 94.4
Prupe.8G115600 Prunus persica HOM05D005562 ORTHO05D007785 2.7e-206 721.8 394 88.8
MD10G1088500 Malus domestica HOM05D005562 ORTHO05D007785 7.0e-202 707.2 397 87.4
MD00G1050500 Malus domestica HOM05D005562 ORTHO05D007785 1.1e-199 699.9 394 86.8
QL11p038618 Quercus lobata HOM05D005562 ORTHO05D007785 3.6e-198 694.9 393 86.0
Cfa005417 Carpinus fangiana HOM05D005562 ORTHO05D007785 5.9e-193 677.6 394 83.5
Haze_01878 Corylus avellana HOM05D005562 ORTHO05D007785 7.8e-193 677.2 393 84.2
CiPaw.05G055600 Carya illinoinensis HOM05D005562 ORTHO05D007785 2.3e-189 665.6 394 83.0
FAN27G3443 Fragaria x ananassa HOM05D005562 ORTHO05D001378 3.5e-185 651.7 377 88.9
Ciclev10028560m.g Citrus clementina HOM05D005562 ORTHO05D007785 7.8e-185 650.6 407 79.6
FAN24G3180 Fragaria x ananassa HOM05D005562 ORTHO05D001378 3.3e-183 645.2 377 88.3
TAR381G1284 Trochodendron aralioides HOM05D005562 ORTHO05D007785 1.2e-180 636.7 404 79.0
GSVIVG01031808001 Vitis vinifera HOM05D005562 ORTHO05D007785 1.7e-179 632.9 404 79.0
Atru.chr5.2830 Acer truncatum HOM05D005562 ORTHO05D007785 6.4e-179 630.9 407 77.9
Nn1g04154 Nelumbo nucifera HOM05D005562 ORTHO05D007785 6.4e-179 630.9 404 78.5
MBI16_g19905_MAGBIO Magnolia biondii HOM05D005562 ORTHO05D007785 1.9e-178 629.4 404 77.0
MELO3C021919.2 Cucumis melo HOM05D005562 ORTHO05D007785 5.4e-178 627.9 388 79.6
TAR625G0430 Trochodendron aralioides HOM05D005562 ORTHO05D007785 1.2e-177 626.7 384 80.5
Sed0010996 Sechium edule HOM05D005562 ORTHO05D007785 2.7e-177 625.5 388 80.7
Aqoxy5G01421 Aquilegia oxysepala HOM05D005562 ORTHO05D007785 3.5e-177 625.2 401 77.6
Thecc.02G095000 Theobroma cacao HOM05D005562 ORTHO05D007785 7.8e-177 624.0 403 76.7
Dinv23596 Davidia involucrata HOM05D005562 ORTHO05D001378 2.3e-176 622.5 396 78.8
CsaV3_2G014210 Cucumis sativus L. HOM05D005562 ORTHO05D007785 3.9e-176 621.7 388 78.6
ClCG09G017590 Citrullus lanatus HOM05D005562 ORTHO05D007785 8.6e-176 620.5 407 76.4
Duzib248G1341 Durio zibethinus HOM05D005562 ORTHO05D007785 1.9e-175 619.4 401 76.3
THA.LOC104814570 Tarenaya hassleriana HOM05D005562 ORTHO05D007785 1.9e-175 619.4 406 75.4
Gohir.D13G035800 Gossypium hirsutum HOM05D005562 ORTHO05D007785 1.2e-174 616.7 401 75.6
BraA09t37197Z Brassica rapa HOM05D005562 ORTHO05D007785 2.8e-174 615.5 393 76.3
CANSAT25G3890 Cannabis sativa HOM05D005562 ORTHO05D007785 4.7e-174 614.8 374 78.1
Gohir.A13G037500 Gossypium hirsutum HOM05D005562 ORTHO05D007785 4.7e-174 614.8 401 76.6
BcaC04g22480 Brassica carinata HOM05D005562 ORTHO05D007785 8.1e-174 614.0 397 76.3
BolC9t54784H Brassica oleracea HOM05D005562 ORTHO05D007785 8.1e-174 614.0 397 76.3
A09p15570 Brassica napus HOM05D005562 ORTHO05D007785 1.1e-173 613.6 393 76.3
C09p18820 Brassica napus HOM05D005562 ORTHO05D007785 1.1e-173 613.6 397 76.6
Sp3g33250 Schrenkiella parvula HOM05D005562 ORTHO05D007785 5.2e-173 611.3 404 75.0
Aa31LG8G16860 Aethionema arabicum HOM05D005562 ORTHO05D007785 8.9e-173 610.5 399 75.2
BcaB07g31395 Brassica carinata HOM05D005562 ORTHO05D007785 5.8e-172 607.8 395 75.7
TPR.G14865 Trifolium pratense HOM05D005562 ORTHO05D007785 9.8e-172 607.1 381 77.7
Eucgr.I01182 Eucalyptus grandis HOM05D005562 ORTHO05D007785 1.7e-171 606.3 400 75.8
TPR.G11154 Trifolium pratense HOM05D005562 ORTHO05D007785 1.7e-171 606.3 390 76.4
EL10Ac1g01621 Beta vulgaris HOM05D005562 ORTHO05D007785 2.2e-171 605.9 402 74.4
Gorai.013G040500 Gossypium raimondii HOM05D005562 ORTHO05D007785 2.9e-171 605.5 427 71.4
Manes.15G144000 Manihot esculenta HOM05D005562 ORTHO05D007785 3.7e-171 605.1 402 74.9
Psat6g096120 Pisum sativum HOM05D005562 ORTHO05D007785 3.7e-171 605.1 367 79.0
Lj9A361T59 Lonicera japonica HOM05D005562 ORTHO05D007785 1.9e-170 602.8 403 75.9
Phvul.003G012000 Phaseolus vulgaris HOM05D005562 ORTHO05D007785 1.9e-170 602.8 394 74.9
Potri.004G145700 Populus trichocarpa HOM05D005562 ORTHO05D007785 2.4e-170 602.4 402 76.1
VMungo1215G0206 Vigna mungo HOM05D005562 ORTHO05D007785 3.2e-170 602.1 394 74.1
Thhalv10023506m.g Eutrema salsugineum HOM05D005562 ORTHO05D007785 9.2e-170 600.5 397 74.8
Lalb_Chr17g0338301 Lupinus albus HOM05D005562 ORTHO05D007785 1.2e-169 600.1 395 74.2
Medtr1g012540 Medicago truncatula HOM05D005562 ORTHO05D007785 1.2e-169 600.1 359 80.8
Glyma.07G179700 Glycine max HOM05D005562 ORTHO05D007785 1.6e-169 599.7 395 75.2
Glyma.20G009400 Glycine max HOM05D005562 ORTHO05D007785 2.1e-169 599.4 395 74.9
ATR0225G001 Amborella trichopoda HOM05D005562 ORTHO05D007785 2.7e-169 599.0 356 81.2
Hma1.2p1_0584F.1_g183170 Hydrangea macrophylla HOM05D005562 ORTHO05D007785 4.6e-169 598.2 407 74.2
Lj2g0016235 Lotus japonicus HOM05D005562 ORTHO05D007785 7.8e-169 597.4 394 74.6
CSS0049808 Camellia sinensis var. sinensis HOM05D005562 ORTHO05D007785 1.3e-168 596.7 403 75.4
AT2G19940 Arabidopsis thaliana HOM05D005562 ORTHO05D007785 2.3e-168 595.9 353 81.0
Ca_12473_v3 Cicer arietinum L. HOM05D005562 ORTHO05D007785 2.3e-168 595.9 367 78.7
Carub.0003s3419 Capsella rubella HOM05D005562 ORTHO05D007785 6.6e-168 594.3 403 73.2
EL10Ac3g06682 Beta vulgaris HOM05D005562 ORTHO05D007785 8.6e-168 594.0 398 72.4
CARHR110380 Cardamine hirsuta HOM05D005562 ORTHO05D007785 1.1e-167 593.6 403 73.9
AUR62042921 Chenopodium quinoa HOM05D005562 ORTHO05D007785 1.9e-167 592.8 347 81.0
COL.COLO4_11726 Corchorus olitorius HOM05D005562 ORTHO05D007785 1.9e-167 592.8 362 80.4
Oeu057671.1 Olea europaea HOM05D005562 ORTHO05D007785 3.3e-167 592.0 401 75.6
Cc07_g19550 Coffea canephora HOM05D005562 ORTHO05D007785 9.5e-167 590.5 368 79.3
TWI79G1184 Tripterygium wilfordii HOM05D005562 ORTHO05D007785 2.1e-166 589.3 406 73.2
PSO210G1477 Papaver somniferum HOM05D005562 ORTHO05D007785 4.0e-165 585.1 394 73.9
PSO170G1474 Papaver somniferum HOM05D005562 ORTHO05D007785 2.0e-164 582.8 394 73.9
Rhsim05G0079900 Rhododendron simsii HOM05D005562 ORTHO05D007785 3.4e-164 582.0 353 79.6
DCAR_022068 Daucus carota HOM05D005562 ORTHO05D001378 1.7e-163 579.7 367 78.2
PGSC0003DMG402025903 Solanum tuberosum HOM05D005562 ORTHO05D007785 1.7e-163 579.7 406 73.4
Migut.B00304 Erythranthe guttata HOM05D005562 ORTHO05D007785 3.8e-163 578.6 352 81.0
PGR142G1983 Punica granatum HOM05D005562 ORTHO05D007785 1.1e-162 577.0 356 78.1
SalBow3G1434 Salvia bowleyana HOM05D005562 ORTHO05D007785 1.1e-162 577.0 353 80.7
arahy.Tifrunner.gnm1.ann1.4TQ1KW Arachis hypogaea HOM05D005562 ORTHO05D007785 1.4e-162 576.6 422 69.9
Sopen01g050880 Solanum pennellii HOM05D005562 ORTHO05D007785 1.4e-162 576.6 405 72.1
SGA_v2.0_scaffold32G13119 Striga asiatica HOM05D005562 ORTHO05D007785 1.4e-162 576.6 386 74.1
unitig_26.g10242 Utricularia gibba HOM05D005562 ORTHO05D007785 2.4e-162 575.9 353 79.9
Solyc01g108660.4 Solanum lycopersicum HOM05D005562 ORTHO05D007785 5.4e-162 574.7 405 71.9
HPP92_018726 Vanilla planifolia HOM05D005562 ORTHO05D007785 5.4e-162 574.7 401 71.3
CAN.G322.41 Capsicum annuum HOM05D005562 ORTHO05D007785 9.2e-162 573.9 354 79.9
arahy.Tifrunner.gnm1.ann1.ZFI36T Arachis hypogaea HOM05D005562 ORTHO05D007785 1.2e-161 573.5 383 74.4
Peaxi162Scf00016g01531 Petunia axillaris HOM05D005562 ORTHO05D007785 1.6e-161 573.2 402 73.4
BcaC04g19978 Brassica carinata HOM05D005562 ORTHO05D007785 8.6e-160 567.4 361 77.0
MSTRG.5375 Avicennia marina HOM05D005562 ORTHO05D007785 1.9e-159 566.2 399 72.7
CDE01G0106 Ceratophyllum demersum HOM05D005562 ORTHO05D007785 9.6e-159 563.9 327 83.2
Ah.13g074710 Amaranthus hybridus HOM05D005562 ORTHO05D007785 8.1e-158 560.8 402 70.9
Nitab4.5_0003726g0070 Nicotiana tabacum HOM05D005562 ORTHO05D007785 3.1e-157 558.9 352 78.4
Os03g0617900 Oryza sativa ssp. japonica HOM05D005562 ORTHO05D007785 1.2e-156 557.0 377 74.0
SalBow4G0329 Salvia bowleyana HOM05D005562 ORTHO05D007785 1.5e-156 556.6 388 72.7
Mapoly0036s0058 Marchantia polymorpha HOM05D005562 ORTHO05D007785 8.4e-155 550.8 344 76.5
Lsat_1_v5_gn_9_108961 Lactuca sativa HOM05D005562 ORTHO05D007785 1.4e-154 550.1 393 70.0
Zm00001eb051410 Zea mays HOM05D005562 ORTHO05D007785 1.9e-154 549.7 356 75.6
Sc06g0001440 Simmondsia chinensis HOM05D005562 ORTHO05D007785 3.2e-154 548.9 314 83.1
BolC9t57765H Brassica oleracea HOM05D005562 ORTHO05D007785 4.2e-154 548.5 382 71.7
Os10g0494200 Oryza sativa ssp. japonica HOM05D005562 ORTHO05D007785 2.7e-153 545.8 356 76.1
Thhalv10002012m.g Eutrema salsugineum HOM05D005562 ORTHO05D007785 1.7e-152 543.1 402 68.7
SMO116G0475 Selaginella moellendorffii HOM05D005562 ORTHO05D007785 1.7e-152 543.1 353 74.2
PGSC0003DMG401025903 Solanum tuberosum HOM05D005562 ORTHO05D007785 1.7e-152 543.1 406 70.0
HanXRQChr13g0402421 Helianthus annuus HOM05D005562 ORTHO05D007785 2.3e-152 542.7 351 75.2
AagrBONN_evm.TU.Sc2ySwM_117.3897 Anthoceros agrestis HOM05D005562 ORTHO05D007785 3.0e-152 542.3 378 68.5
AL3G48260 Arabidopsis lyrata HOM05D005562 ORTHO05D007785 1.3e-150 537.0 314 81.8
FAN15G1080 Fragaria x ananassa HOM05D005562 ORTHO05D001378 1.3e-150 537.0 386 75.4
HanXRQChr16g0528561 Helianthus annuus HOM05D005562 ORTHO05D007785 1.3e-150 537.0 392 68.9
ECA240G1421 Erigeron canadensis HOM05D005562 ORTHO05D007785 1.6e-150 536.6 395 69.1
Pp3c24_19140 Physcomitrium patens HOM05D005562 ORTHO05D007785 2.9e-147 525.8 355 72.4
Nitab4.5_0001401g0050 Nicotiana tabacum HOM05D005562 ORTHO05D007785 6.4e-147 524.6 366 72.7
Pp3c8_22120 Physcomitrium patens HOM05D005562 ORTHO05D007785 6.4e-147 524.6 344 73.5
Hund01581 Selenicereus undatus HOM05D005562 ORTHO05D007785 2.1e-145 519.6 463 60.9
CBR_g5649 Chara braunii HOM05D005562 ORTHO05D001468 4.3e-143 511.9 405 61.5
AUR62035865 Chenopodium quinoa HOM05D005562 ORTHO05D007785 2.2e-139 499.6 573 49.2
vmacro19466 Vaccinium macrocarpon HOM05D005562 ORTHO05D007785 1.6e-137 493.4 354 70.6
vmacro23230 Vaccinium macrocarpon HOM05D005562 ORTHO05D007785 2.0e-132 476.5 292 79.1
PRCOL_00005741 Prasinoderma coloniale HOM05D005562 ORTHO05D007785 1.1e-130 470.7 346 65.9
Cre03.g146187 Chlamydomonas reinhardtii HOM05D005562 ORTHO05D007785 2.7e-129 466.1 344 65.1
C09p49210 Brassica napus HOM05D005562 ORTHO05D007785 3.0e-120 436.0 275 77.8
Actinidia17846 Actinidia chinensis HOM05D005562 ORTHO05D007785 5.0e-75 285.8 194 73.7
Cpa.g.sc62.58 Carica papaya HOM05D005562 ORTHO05D007785 3.4e-71 273.1 147 87.1
PSO384G1669 Papaver somniferum HOM05D005562 ORTHO05D007785 3.4e-71 273.1 374 45.7
HanXRQChr10g0318401 Helianthus annuus HOM05D005562 ORTHO05D007785 4.4e-63 246.1 182 64.3
DCAR_021731 Daucus carota HOM05D005562 ORTHO05D007785 5.6e-58 229.2 278 50.4
Cpa.g.sc26.106 Carica papaya HOM05D005562 ORTHO05D007785 5.8e-55 219.2 143 74.8
Cpa.g.sc62.56 Carica papaya HOM05D005562 ORTHO05D007785 1.9e-53 214.2 187 61.0
Oeu021926.1 Olea europaea HOM05D005562 ORTHO05D007785 3.0e-43 180.3 112 79.5
Actinidia17880 Actinidia chinensis HOM05D005562 ORTHO05D007785 3.8e-38 163.3 112 71.4
Cfa027024 Carpinus fangiana HOM05D005562 ORTHO05D121372 1.1e-34 151.8 355 30.1
arahy.Tifrunner.gnm1.ann1.Q8AXKZ Arachis hypogaea HOM05D005562 ORTHO05D007785 1.6e-33 147.9 113 66.4
Actinidia17845 Actinidia chinensis HOM05D005562 ORTHO05D030745 6.4e-30 136.0 107 65.4
SEGI_28239 Sequoiadendron giganteum HOM05D005562 ORTHO05D007785 3.3e-26 123.6 80 71.2
A10p14750 Brassica napus HOM05D005562 ORTHO05D007785 3.3e-18 97.1 53 83.0
CSS0029422 Camellia sinensis var. sinensis HOM05D005562 ORTHO05D111180 4.6e-12 76.6 94 45.7
Glyma.08G079000 Glycine max HOM05D005562 ORTHO05D007785 1.5e-10 71.6 45 71.1
Glyma.08G079050 Glycine max HOM05D005562 ORTHO05D213306 2.2e-09 67.8 61 55.7


User provided reference genes

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