Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g06710 Fragaria vesca HOM05D002370 ORTHO05D020284 9.7e-49 196.4 95 100.0
FAN24G2034 Fragaria x ananassa HOM05D002370 ORTHO05D020284 1.0e-34 149.8 71 98.6
FAN20G0378 Fragaria x ananassa HOM05D002370 ORTHO05D020284 1.0e-10 70.1 45 80.0
FvH4_2g03080 Fragaria vesca HOM05D002370 ORTHO05D003878 1.5e-09 66.2 35 91.4
FAN15G3522 Fragaria x ananassa HOM05D002370 ORTHO05D003878 1.5e-09 66.2 35 91.4
FAN20G2522 Fragaria x ananassa HOM05D002370 ORTHO05D003878 1.5e-09 66.2 35 91.4
FAN24G1227 Fragaria x ananassa HOM05D002370 ORTHO05D003878 1.5e-09 66.2 35 91.4
FAN27G1380 Fragaria x ananassa HOM05D002370 ORTHO05D003878 1.5e-09 66.2 35 91.4
MD00G1031100 Malus domestica HOM05D002370 ORTHO05D003878 1.5e-09 66.2 35 91.4
MD05G1107800 Malus domestica HOM05D002370 ORTHO05D003878 1.5e-09 66.2 35 91.4
MD10G1112000 Malus domestica HOM05D002370 ORTHO05D003878 1.5e-09 66.2 35 91.4
Glyma.11G002600 Glycine max HOM05D002370 ORTHO05D003878 2.0e-09 65.9 49 65.3
Prupe.8G151300 Prunus persica HOM05D002370 ORTHO05D003878 3.4e-09 65.1 35 88.6
arahy.Tifrunner.gnm1.ann1.3J1H0B Arachis hypogaea HOM05D002370 ORTHO05D003878 5.7e-09 64.3 49 63.3
arahy.Tifrunner.gnm1.ann1.NYP183 Arachis hypogaea HOM05D002370 ORTHO05D003878 5.7e-09 64.3 49 63.3
Glyma.01G241300 Glycine max HOM05D002370 ORTHO05D003878 5.7e-09 64.3 49 63.3
Lj1g0008728 Lotus japonicus HOM05D002370 ORTHO05D003878 5.7e-09 64.3 35 85.7
Lalb_Chr05g0210831 Lupinus albus HOM05D002370 ORTHO05D003878 5.7e-09 64.3 49 63.3
Phvul.002G049900 Phaseolus vulgaris HOM05D002370 ORTHO05D003878 5.7e-09 64.3 49 63.3
CAN.G606.79 Capsicum annuum HOM05D002370 ORTHO05D020284 7.5e-09 63.9 51 64.7
GSVIVG01037040001 Vitis vinifera HOM05D002370 ORTHO05D003878 7.5e-09 63.9 47 66.0
RcHm_v2.0_Chr6g0247951 Rosa chinensis HOM05D002370 ORTHO05D003878 1.3e-08 63.2 35 88.6
CAN.G411.107 Capsicum annuum HOM05D002370 ORTHO05D003878 1.7e-08 62.8 38 78.9
CAN.G1164.1 Capsicum annuum HOM05D002370 ORTHO05D003878 2.2e-08 62.4 37 78.4
Ca_24363_v3 Cicer arietinum L. HOM05D002370 ORTHO05D003878 2.2e-08 62.4 35 82.9
Medtr5g005380 Medicago truncatula HOM05D002370 ORTHO05D003878 2.2e-08 62.4 35 82.9
Psat4g229000 Pisum sativum HOM05D002370 ORTHO05D003878 2.2e-08 62.4 35 82.9
TPR.G8301 Trifolium pratense HOM05D002370 ORTHO05D003878 2.2e-08 62.4 35 82.9
Actinidia02446 Actinidia chinensis HOM05D002370 ORTHO05D003878 2.8e-08 62.0 49 61.2
CSS0026275 Camellia sinensis var. sinensis HOM05D002370 ORTHO05D003878 2.8e-08 62.0 49 61.2
CSS0028039 Camellia sinensis var. sinensis HOM05D002370 ORTHO05D003878 3.7e-08 61.6 49 63.3
CAN.G10698.1 Capsicum annuum HOM05D002370 ORTHO05D003878 3.7e-08 61.6 49 61.2
Peaxi162Scf00016g03243 Petunia axillaris HOM05D002370 ORTHO05D003878 3.7e-08 61.6 49 61.2
Solyc01g106770.4 Solanum lycopersicum HOM05D002370 ORTHO05D003878 3.7e-08 61.6 49 61.2
Sopen01g049080 Solanum pennellii HOM05D002370 ORTHO05D003878 3.7e-08 61.6 49 61.2
PGSC0003DMG401025733 Solanum tuberosum HOM05D002370 ORTHO05D003878 3.7e-08 61.6 49 61.2
Atru.chr4.144 Acer truncatum HOM05D002370 ORTHO05D003878 4.9e-08 61.2 49 61.2
Atru.chr4.155 Acer truncatum HOM05D002370 ORTHO05D003878 4.9e-08 61.2 49 61.2
ATR0753G079 Amborella trichopoda HOM05D002370 ORTHO05D003878 4.9e-08 61.2 49 61.2
CAN.G1164.4 Capsicum annuum HOM05D002370 ORTHO05D003878 4.9e-08 61.2 49 61.2
CDE06G0012 Ceratophyllum demersum HOM05D002370 ORTHO05D003878 4.9e-08 61.2 49 61.2
COL.COLO4_32473 Corchorus olitorius HOM05D002370 ORTHO05D003878 4.9e-08 61.2 49 61.2
DCAR_003604 Daucus carota HOM05D002370 ORTHO05D003878 4.9e-08 61.2 49 61.2
Dinv09531 Davidia involucrata HOM05D002370 ORTHO05D003878 4.9e-08 61.2 49 61.2
Duzib132G1084 Durio zibethinus HOM05D002370 ORTHO05D003878 4.9e-08 61.2 49 61.2
ECA232G2594 Erigeron canadensis HOM05D002370 ORTHO05D003878 4.9e-08 61.2 49 61.2
Gohir.A01G009566 Gossypium hirsutum HOM05D002370 ORTHO05D003878 4.9e-08 61.2 49 61.2
Gohir.A12G018200 Gossypium hirsutum HOM05D002370 ORTHO05D003878 4.9e-08 61.2 49 61.2
Gohir.D01G009100 Gossypium hirsutum HOM05D002370 ORTHO05D003878 4.9e-08 61.2 49 61.2
Gohir.D12G018800 Gossypium hirsutum HOM05D002370 ORTHO05D003878 4.9e-08 61.2 49 61.2
Gorai.002G011200 Gossypium raimondii HOM05D002370 ORTHO05D003878 4.9e-08 61.2 49 61.2
Gorai.008G019100 Gossypium raimondii HOM05D002370 ORTHO05D003878 4.9e-08 61.2 49 61.2
HanXRQChr04g0107251 Helianthus annuus HOM05D002370 ORTHO05D003878 4.9e-08 61.2 49 61.2
Lsat_1_v5_gn_4_143680 Lactuca sativa HOM05D002370 ORTHO05D003878 4.9e-08 61.2 49 61.2
Lj5C222G6 Lonicera japonica HOM05D002370 ORTHO05D003878 4.9e-08 61.2 49 61.2
Lalb_Chr16g0376331 Lupinus albus HOM05D002370 ORTHO05D020284 4.9e-08 61.2 46 63.0
Nn5g30713 Nelumbo nucifera HOM05D002370 ORTHO05D003878 4.9e-08 61.2 49 61.2
QL11p028985 Quercus lobata HOM05D002370 ORTHO05D003878 4.9e-08 61.2 35 82.9
Sc18g0007320 Simmondsia chinensis HOM05D002370 ORTHO05D003878 4.9e-08 61.2 49 61.2
Thecc.02G120900 Theobroma cacao HOM05D002370 ORTHO05D003878 4.9e-08 61.2 49 61.2
VMungo1215G1081 Vigna mungo HOM05D002370 ORTHO05D003878 4.9e-08 61.2 49 61.2
Ah.01g024560 Amaranthus hybridus HOM05D002370 ORTHO05D003878 6.3e-08 60.8 49 63.3
Hma1.2p1_0661F.1_g197980 Hydrangea macrophylla HOM05D002370 ORTHO05D003878 6.3e-08 60.8 35 80.0
TAR381G0773 Trochodendron aralioides HOM05D002370 ORTHO05D003878 6.3e-08 60.8 49 63.3
Aa31LG10G4090 Aethionema arabicum HOM05D002370 ORTHO05D003878 8.3e-08 60.5 49 61.2
AL1G57600 Arabidopsis lyrata HOM05D002370 ORTHO05D003878 8.3e-08 60.5 49 61.2
AT1G50030 Arabidopsis thaliana HOM05D002370 ORTHO05D003878 8.3e-08 60.5 49 61.2
MSTRG.16667 Avicennia marina HOM05D002370 ORTHO05D003878 8.3e-08 60.5 49 61.2
EL10Ac9g22169 Beta vulgaris HOM05D002370 ORTHO05D003878 8.3e-08 60.5 66 50.0
Carub.0001s3921 Capsella rubella HOM05D002370 ORTHO05D003878 8.3e-08 60.5 49 61.2
Cpa.g.sc106.24 Carica papaya HOM05D002370 ORTHO05D003878 8.3e-08 60.5 49 61.2
AUR62027030 Chenopodium quinoa HOM05D002370 ORTHO05D003878 8.3e-08 60.5 49 61.2
AUR62030874 Chenopodium quinoa HOM05D002370 ORTHO05D003878 8.3e-08 60.5 49 61.2
ClCG02G007160 Citrullus lanatus HOM05D002370 ORTHO05D003878 8.3e-08 60.5 49 61.2
MELO3C018533.2 Cucumis melo HOM05D002370 ORTHO05D003878 8.3e-08 60.5 49 61.2
CsaV3_7G007670 Cucumis sativus L. HOM05D002370 ORTHO05D003878 8.3e-08 60.5 49 61.2
Hma1.2p1_1051F.1_g252210 Hydrangea macrophylla HOM05D002370 ORTHO05D003878 8.3e-08 60.5 49 61.2
Oeu028915.2 Olea europaea HOM05D002370 ORTHO05D003878 8.3e-08 60.5 49 61.2
Sed0018886 Sechium edule HOM05D002370 ORTHO05D003878 8.3e-08 60.5 49 61.2
THA.LOC104826500 Tarenaya hassleriana HOM05D002370 ORTHO05D003878 8.3e-08 60.5 49 61.2
Rhsim11G0149700 Rhododendron simsii HOM05D002370 ORTHO05D003878 1.1e-07 60.1 49 59.2
Aqoxy6G01518 Aquilegia oxysepala HOM05D002370 ORTHO05D003878 1.4e-07 59.7 49 59.2
BcaB02g11126 Brassica carinata HOM05D002370 ORTHO05D003878 1.8e-07 59.3 35 80.0
BcaC05g27452 Brassica carinata HOM05D002370 ORTHO05D003878 1.8e-07 59.3 49 59.2
A05p20360 Brassica napus HOM05D002370 ORTHO05D003878 1.8e-07 59.3 49 59.2
C05p34110 Brassica napus HOM05D002370 ORTHO05D003878 1.8e-07 59.3 49 59.2
BolC5t32146H Brassica oleracea HOM05D002370 ORTHO05D003878 1.8e-07 59.3 49 59.2
BraA05t20943Z Brassica rapa HOM05D002370 ORTHO05D003878 1.8e-07 59.3 49 59.2
Thhalv10011174m.g Eutrema salsugineum HOM05D002370 ORTHO05D003878 1.8e-07 59.3 49 59.2
PSO541G1630 Papaver somniferum HOM05D002370 ORTHO05D003878 1.8e-07 59.3 49 59.2
PSO675G4735 Papaver somniferum HOM05D002370 ORTHO05D003878 1.8e-07 59.3 49 59.2
Sp1g36890 Schrenkiella parvula HOM05D002370 ORTHO05D003878 1.8e-07 59.3 49 59.2
BcaB07g33455 Brassica carinata HOM05D002370 ORTHO05D003878 2.4e-07 58.9 49 57.1
BcaC08g43183 Brassica carinata HOM05D002370 ORTHO05D003878 2.4e-07 58.9 49 57.1
A06p03390 Brassica napus HOM05D002370 ORTHO05D003878 2.4e-07 58.9 49 57.1
C06p04900 Brassica napus HOM05D002370 ORTHO05D003878 2.4e-07 58.9 49 57.1
BolC6t35612H Brassica oleracea HOM05D002370 ORTHO05D003878 2.4e-07 58.9 49 57.1
BraA06t23548Z Brassica rapa HOM05D002370 ORTHO05D003878 2.4e-07 58.9 49 57.1
Oeu025303.1 Olea europaea HOM05D002370 ORTHO05D003878 2.4e-07 58.9 30 93.3
Os05g0235300 Oryza sativa ssp. japonica HOM05D002370 ORTHO05D003878 2.4e-07 58.9 30 93.3
SEGI_12344 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 2.4e-07 58.9 56 51.8
SGA_v2.0_scaffold32G12979 Striga asiatica HOM05D002370 ORTHO05D003878 2.4e-07 58.9 49 61.2
HPP92_016412 Vanilla planifolia HOM05D002370 ORTHO05D003878 2.4e-07 58.9 49 59.2
Zm00001eb285840 Zea mays HOM05D002370 ORTHO05D003878 2.4e-07 58.9 30 93.3
CiPaw.06G163300 Carya illinoinensis HOM05D002370 ORTHO05D003878 3.1e-07 58.5 49 59.2
Eucgr.I02503 Eucalyptus grandis HOM05D002370 ORTHO05D003878 3.1e-07 58.5 49 61.2
Manes.07G052660 Manihot esculenta HOM05D002370 ORTHO05D003878 3.1e-07 58.5 49 59.2
TWI59G1328 Tripterygium wilfordii HOM05D002370 ORTHO05D003878 3.1e-07 58.5 49 59.2
CAN.G1627.3 Capsicum annuum HOM05D002370 ORTHO05D003878 4.1e-07 58.2 51 56.9
Ciclev10027661m.g Citrus clementina HOM05D002370 ORTHO05D003878 4.1e-07 58.2 49 59.2
Cc02_g20170 Coffea canephora HOM05D002370 ORTHO05D003878 4.1e-07 58.2 49 57.1
HanXRQChr04g0107281 Helianthus annuus HOM05D002370 ORTHO05D003878 4.1e-07 58.2 49 59.2
SEGI_32787 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 4.1e-07 58.2 49 55.1
unitig_60.g25464 Utricularia gibba HOM05D002370 ORTHO05D003878 4.1e-07 58.2 48 58.3
Migut.B00477 Erythranthe guttata HOM05D002370 ORTHO05D003878 5.4e-07 57.8 49 61.2
PGR142G4285 Punica granatum HOM05D002370 ORTHO05D003878 5.4e-07 57.8 49 61.2
SGA_v2.0_scaffold519G52682 Striga asiatica HOM05D002370 ORTHO05D003878 5.4e-07 57.8 49 61.2
Potri.001G289200 Populus trichocarpa HOM05D002370 ORTHO05D003878 7.0e-07 57.4 49 59.2
Sabra16G0181000 Salix brachista HOM05D002370 ORTHO05D003878 7.0e-07 57.4 49 59.2
DCAR_021938 Daucus carota HOM05D002370 ORTHO05D003878 9.2e-07 57.0 49 57.1
PSO675G3080 Papaver somniferum HOM05D002370 ORTHO05D003878 9.2e-07 57.0 49 57.1
PSO732G0082 Papaver somniferum HOM05D002370 ORTHO05D003878 9.2e-07 57.0 49 57.1
AagrBONN_evm.TU.Sc2ySwM_228.5412 Anthoceros agrestis HOM05D002370 ORTHO05D003878 1.2e-06 56.6 35 74.3
CAN.G289.59 Capsicum annuum HOM05D002370 ORTHO05D003878 1.2e-06 56.6 34 79.4
CARHR040140 Cardamine hirsuta HOM05D002370 ORTHO05D003878 1.6e-06 56.2 49 57.1
Haze_10321 Corylus avellana HOM05D002370 ORTHO05D003878 1.6e-06 56.2 49 57.1
Nitab4.5_0000772g0070 Nicotiana tabacum HOM05D002370 ORTHO05D003878 1.6e-06 56.2 49 53.1
Nitab4.5_0010974g0020 Nicotiana tabacum HOM05D002370 ORTHO05D003878 1.6e-06 56.2 49 53.1
SHI03324 Sapria himalayana HOM05D002370 ORTHO05D003878 1.6e-06 56.2 35 77.1
CiPaw.05G021600 Carya illinoinensis HOM05D002370 ORTHO05D003878 3.5e-06 55.1 49 57.1
CDE04G3197 Ceratophyllum demersum HOM05D002370 ORTHO05D020284 3.5e-06 55.1 34 79.4
SMO147G0225 Selaginella moellendorffii HOM05D002370 ORTHO05D003878 3.5e-06 55.1 49 55.1
TAR625G0605 Trochodendron aralioides HOM05D002370 ORTHO05D003878 4.5e-06 54.7 49 55.1


User provided reference genes

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