Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g06640 Fragaria vesca HOM05D007656 ORTHO05D008529 3.4e-118 428.3 211 100.0
FAN24G2886 Fragaria x ananassa HOM05D000005 ORTHO05D008529 7.0e-116 420.6 211 98.6
Prupe.8G120400 Prunus persica HOM05D000005 ORTHO05D000012 1.1e-49 200.7 214 52.8
Prupe.8G119800 Prunus persica HOM05D000005 ORTHO05D000012 1.4e-47 193.7 214 54.2
MD15G1057200 Malus domestica HOM05D000521 ORTHO05D008529 1.5e-38 163.7 161 54.7
FAN15G0049 Fragaria x ananassa HOM05D007656 ORTHO05D008529 1.1e-36 157.5 150 56.7
RcHm_v2.0_Chr6g0276251 Rosa chinensis HOM05D000005 ORTHO05D008529 1.8e-34 150.2 131 57.3
FvH4_2g36090 Fragaria vesca HOM05D000005 ORTHO05D008529 6.7e-34 148.3 130 56.9
RcHm_v2.0_Chr6g0276271 Rosa chinensis HOM05D000005 ORTHO05D008529 8.8e-34 147.9 131 56.5
FvH4_2g06570 Fragaria vesca HOM05D007656 ORTHO05D008529 1.5e-33 147.1 182 48.4
FAN21G1592 Fragaria x ananassa HOM05D000005 ORTHO05D008529 1.5e-33 147.1 130 56.2
RcHm_v2.0_Chr6g0276291 Rosa chinensis HOM05D000005 ORTHO05D008529 1.5e-33 147.1 130 56.2
FvH4_2g06610 Fragaria vesca HOM05D000005 ORTHO05D008529 4.3e-33 145.6 138 52.2
MD07G1045400 Malus domestica HOM05D000009 ORTHO05D000008 1.7e-32 143.7 146 50.7
FvH4_2g14140 Fragaria vesca HOM05D000005 ORTHO05D008529 2.2e-32 143.3 130 55.4
MD07G1045600 Malus domestica HOM05D000009 ORTHO05D000008 2.8e-32 142.9 131 56.5
Prupe.4G127700 Prunus persica HOM05D007656 ORTHO05D008529 4.8e-32 142.1 143 53.1
Prupe.5G012500 Prunus persica HOM05D007656 ORTHO05D008529 1.4e-31 140.6 128 57.0
MD06G1218400 Malus domestica HOM05D000306 ORTHO05D008529 4.1e-31 139.0 148 51.4
Prupe.5G012700 Prunus persica HOM05D007656 ORTHO05D008529 2.0e-30 136.7 128 55.5
Prupe.1G197200 Prunus persica HOM05D007656 ORTHO05D008529 7.7e-30 134.8 154 48.7
Prupe.8G119700 Prunus persica HOM05D007656 ORTHO05D008529 1.3e-29 134.0 129 51.9
MD02G1277000 Malus domestica HOM05D007656 ORTHO05D008529 4.2e-28 129.0 153 48.4
Prupe.8G120300 Prunus persica HOM05D000005 ORTHO05D000012 6.1e-27 125.2 147 47.6
MD07G1044900 Malus domestica HOM05D007656 ORTHO05D008529 3.9e-26 122.5 117 56.4
Prupe.5G012300 Prunus persica HOM05D007656 ORTHO05D008529 5.1e-26 122.1 128 51.6
MD00G1172900 Malus domestica HOM05D000009 ORTHO05D000008 3.3e-25 119.4 131 49.6
Prupe.5G011700 Prunus persica HOM05D007656 ORTHO05D008529 2.2e-24 116.7 130 49.2
MD15G1057100 Malus domestica HOM05D007656 ORTHO05D008529 1.1e-23 114.4 93 62.4
Prupe.5G012400 Prunus persica HOM05D007656 ORTHO05D008529 1.1e-23 114.4 130 48.5
Prupe.5G011800 Prunus persica HOM05D007656 ORTHO05D008529 1.8e-23 113.6 128 48.4
RcHm_v2.0_Chr6g0258551 Rosa chinensis HOM05D007656 ORTHO05D008529 1.8e-23 113.6 138 42.8
THA.LOC104820128 Tarenaya hassleriana HOM05D007656 ORTHO05D008529 1.5e-22 110.5 141 39.7
FvH4_2g14130 Fragaria vesca HOM05D007656 ORTHO05D029394 5.9e-22 108.6 129 44.2
RcHm_v2.0_Chr6g0258611 Rosa chinensis HOM05D007656 ORTHO05D008529 5.9e-22 108.6 131 49.6
FvH4_2g36100 Fragaria vesca HOM05D000005 ORTHO05D029394 1.0e-21 107.8 129 44.2
Ciclev10002149m.g Citrus clementina HOM05D007656 ORTHO05D008529 1.9e-20 103.6 116 45.7
TWI53G0295 Tripterygium wilfordii HOM05D000694 ORTHO05D008529 1.9e-20 103.6 126 42.9
COL.COLO4_29685 Corchorus olitorius HOM05D007656 ORTHO05D008529 2.5e-20 103.2 177 30.5
Prupe.4G212800 Prunus persica HOM05D007656 ORTHO05D008529 9.4e-20 101.3 134 41.8
Duzib213G0740 Durio zibethinus HOM05D007656 ORTHO05D008529 1.2e-19 100.9 137 35.0
MD03G1201200 Malus domestica HOM05D007656 ORTHO05D008529 2.1e-19 100.1 134 41.8
MD05G1139600 Malus domestica HOM05D000494 ORTHO05D008529 6.1e-19 98.6 139 33.8
Thecc.01G158100 Theobroma cacao HOM05D007656 ORTHO05D008529 6.1e-19 98.6 150 36.0
FAN20G3034 Fragaria x ananassa HOM05D000005 ORTHO05D029394 8.0e-19 98.2 129 42.6
Atru.chr6.33 Acer truncatum HOM05D007656 ORTHO05D008529 2.3e-18 96.7 145 36.6
Ciclev10021347m.g Citrus clementina HOM05D007656 ORTHO05D008529 6.7e-18 95.1 132 40.2
Atru.chr1.33 Acer truncatum HOM05D007656 ORTHO05D008529 4.4e-17 92.4 128 39.1
MD11G1218200 Malus domestica HOM05D007656 ORTHO05D008529 4.4e-17 92.4 90 51.1
Duzib093G1087 Durio zibethinus HOM05D007656 ORTHO05D008529 5.7e-17 92.0 131 34.4
A06p46380 Brassica napus HOM05D000005 ORTHO05D000294 7.5e-17 91.7 135 36.3
BraA06t27502Z Brassica rapa HOM05D000005 ORTHO05D000294 7.5e-17 91.7 135 36.3
Manes.01G113600 Manihot esculenta HOM05D007656 ORTHO05D008529 7.5e-17 91.7 118 39.0
Manes.12G099400 Manihot esculenta HOM05D000009 ORTHO05D000008 7.5e-17 91.7 136 36.0
Cpa.g.sc87.8 Carica papaya HOM05D000317 ORTHO05D008529 9.7e-17 91.3 185 31.4
Manes.10G119600 Manihot esculenta HOM05D000138 ORTHO05D008529 3.7e-16 89.4 124 36.3
BolC8t51984H Brassica oleracea HOM05D007656 ORTHO05D008529 4.8e-16 89.0 135 34.8
BcaC06g31517 Brassica carinata HOM05D000005 ORTHO05D000294 6.3e-16 88.6 135 35.6
Cpa.g.sc87.14 Carica papaya HOM05D000317 ORTHO05D008529 6.3e-16 88.6 151 35.1
Manes.10G012500 Manihot esculenta HOM05D000510 ORTHO05D001548 6.3e-16 88.6 142 35.9
Ciclev10003516m.g Citrus clementina HOM05D007656 ORTHO05D008529 8.2e-16 88.2 146 35.6
Thhalv10002051m.g Eutrema salsugineum HOM05D000005 ORTHO05D008529 8.2e-16 88.2 123 35.8
Manes.10G012400 Manihot esculenta HOM05D000510 ORTHO05D001548 1.1e-15 87.8 120 40.0
Manes.10G012600 Manihot esculenta HOM05D000510 ORTHO05D001548 1.1e-15 87.8 142 35.2
AL3G47945 Arabidopsis lyrata HOM05D000005 ORTHO05D000294 1.4e-15 87.4 123 36.6
FAN24G2255 Fragaria x ananassa HOM05D007656 ORTHO05D008529 1.4e-15 87.4 109 48.6
Thecc.02G023700 Theobroma cacao HOM05D007656 ORTHO05D008529 1.4e-15 87.4 128 37.5
AT2G20142 Arabidopsis thaliana HOM05D000005 ORTHO05D000294 1.8e-15 87.0 131 35.9
BcaC06g34402 Brassica carinata HOM05D000005 ORTHO05D008529 1.8e-15 87.0 135 35.6
C07p29060 Brassica napus HOM05D001366 ORTHO05D008529 1.8e-15 87.0 135 35.6
BolC7t43445H Brassica oleracea HOM05D001366 ORTHO05D008529 1.8e-15 87.0 135 35.6
Potri.001G007501 Populus trichocarpa HOM05D007656 ORTHO05D008529 1.8e-15 87.0 131 39.7
CARHR110670 Cardamine hirsuta HOM05D000005 ORTHO05D008529 2.4e-15 86.7 128 37.5
Ciclev10024498m.g Citrus clementina HOM05D007656 ORTHO05D008529 2.4e-15 86.7 128 38.3
Duzib132G0971 Durio zibethinus HOM05D007656 ORTHO05D008529 2.4e-15 86.7 130 39.2
Manes.10G119500 Manihot esculenta HOM05D000138 ORTHO05D000078 2.4e-15 86.7 124 33.9
Thecc.07G066400 Theobroma cacao HOM05D000521 ORTHO05D008529 2.4e-15 86.7 142 31.7
Manes.10G012300 Manihot esculenta HOM05D000510 ORTHO05D001548 3.1e-15 86.3 133 36.8
Thecc.02G021500 Theobroma cacao HOM05D007656 ORTHO05D008529 4.1e-15 85.9 126 40.5
RcHm_v2.0_Chr1g0372601 Rosa chinensis HOM05D007656 ORTHO05D008529 7.0e-15 85.1 89 48.3
TWI18G0941 Tripterygium wilfordii HOM05D010260 ORTHO05D008529 7.0e-15 85.1 158 35.4
Manes.07G116400 Manihot esculenta HOM05D007656 ORTHO05D008529 2.6e-14 83.2 141 35.5
Thecc.02G020200 Theobroma cacao HOM05D007656 ORTHO05D008529 2.6e-14 83.2 135 34.8
Carub.0003s3445 Capsella rubella HOM05D000005 ORTHO05D000294 3.5e-14 82.8 136 34.6
Ciclev10024525m.g Citrus clementina HOM05D007656 ORTHO05D008529 4.5e-14 82.4 121 37.2
Prupe.8G120000 Prunus persica HOM05D007656 ORTHO05D008529 5.9e-14 82.0 136 39.0
RcHm_v2.0_Chr5g0039471 Rosa chinensis HOM05D007656 ORTHO05D030061 5.9e-14 82.0 124 36.3
Sabra19G0011600 Salix brachista HOM05D007656 ORTHO05D008529 5.9e-14 82.0 141 38.3
SabraUnG0004400 Salix brachista HOM05D003906 ORTHO05D004776 5.9e-14 82.0 144 37.5
Thecc.02G020400 Theobroma cacao HOM05D007656 ORTHO05D008529 5.9e-14 82.0 120 38.3
Sabra19G0012000 Salix brachista HOM05D007656 ORTHO05D008529 7.7e-14 81.6 132 38.6
Prupe.4G212900 Prunus persica HOM05D007656 ORTHO05D008529 1.0e-13 81.3 107 43.9
Manes.10G131300 Manihot esculenta HOM05D007656 ORTHO05D008529 1.7e-13 80.5 118 33.9
Duzib264G0127 Durio zibethinus HOM05D007656 ORTHO05D008529 2.9e-13 79.7 98 40.8
CARHR110660 Cardamine hirsuta HOM05D000005 ORTHO05D008529 3.8e-13 79.3 119 36.1
Sabra19G0010500 Salix brachista HOM05D007656 ORTHO05D008529 3.8e-13 79.3 132 38.6
Thecc.02G020900 Theobroma cacao HOM05D007656 ORTHO05D008529 6.5e-13 78.6 122 36.1
Sabra19G0001900 Salix brachista HOM05D007656 ORTHO05D008529 1.1e-12 77.8 131 39.7
Manes.10G131200 Manihot esculenta HOM05D007656 ORTHO05D008529 1.5e-12 77.4 118 37.3
Sabra19G0011800 Salix brachista HOM05D007656 ORTHO05D008529 1.5e-12 77.4 150 36.0
Atru.chr5.3422 Acer truncatum HOM05D007656 ORTHO05D008529 3.2e-12 76.3 170 30.0
Manes.07G014200 Manihot esculenta HOM05D007656 ORTHO05D008529 4.2e-12 75.9 174 28.7
TWI18G1447 Tripterygium wilfordii HOM05D000008 ORTHO05D413543 9.4e-12 74.7 142 36.6
Ciclev10003101m.g Citrus clementina HOM05D007656 ORTHO05D008529 1.6e-11 73.9 126 34.1
RcHm_v2.0_Chr5g0039451 Rosa chinensis HOM05D007656 ORTHO05D030061 1.6e-11 73.9 127 32.3
RcHm_v2.0_Chr6g0276221 Rosa chinensis HOM05D007656 ORTHO05D029394 2.1e-11 73.6 92 40.2
Manes.04G013200 Manihot esculenta HOM05D000548 ORTHO05D008529 4.7e-11 72.4 156 34.0
Sabra18G0026100 Salix brachista HOM05D007656 ORTHO05D008529 4.7e-11 72.4 138 33.3
Potri.006G267201 Populus trichocarpa HOM05D007656 ORTHO05D008529 4.0e-10 69.3 141 32.6
Potri.T044600 Populus trichocarpa HOM05D000101 ORTHO05D000089 4.0e-10 69.3 137 36.5
Sp5g20860 Schrenkiella parvula HOM05D000005 ORTHO05D000294 4.0e-10 69.3 100 40.0
Thecc.02G020000 Theobroma cacao HOM05D007656 ORTHO05D008529 6.8e-10 68.6 126 34.1
Potri.018G023600 Populus trichocarpa HOM05D007656 ORTHO05D008529 8.8e-10 68.2 148 32.4
Prupe.8G120500 Prunus persica HOM05D007656 ORTHO05D008529 3.4e-09 66.2 137 35.8
Sabra19G0012300 Salix brachista HOM05D002390 ORTHO05D002846 3.4e-09 66.2 106 39.6
Potri.018G145558 Populus trichocarpa HOM05D000101 ORTHO05D000089 7.5e-09 65.1 126 34.9
Thecc.02G020700 Theobroma cacao HOM05D007656 ORTHO05D008529 1.3e-08 64.3 126 34.1
Ciclev10003970m.g Citrus clementina HOM05D007656 ORTHO05D008529 1.7e-08 63.9 88 37.5
Thecc.02G023800 Theobroma cacao HOM05D007656 ORTHO05D008529 1.7e-08 63.9 119 36.1
Ciclev10002893m.g Citrus clementina HOM05D007656 ORTHO05D008529 2.2e-08 63.5 93 41.9
CARHR290800 Cardamine hirsuta HOM05D007656 ORTHO05D008529 3.7e-08 62.8 120 35.0
Sabra18G0026200 Salix brachista HOM05D007656 ORTHO05D008529 4.8e-08 62.4 138 30.4
Ciclev10003163m.g Citrus clementina HOM05D007656 ORTHO05D008529 3.1e-07 59.7 86 41.9
BraA09t37029Z Brassica rapa HOM05D000005 ORTHO05D018617 4.1e-07 59.3 185 30.8
COL.COLO4_30650 Corchorus olitorius HOM05D007656 ORTHO05D008529 4.1e-07 59.3 130 33.8
Ciclev10003708m.g Citrus clementina HOM05D007656 ORTHO05D008529 7.0e-07 58.5 95 37.9
RcHm_v2.0_Chr5g0028831 Rosa chinensis HOM05D000005 ORTHO05D000012 2.7e-06 56.6 68 44.1
Sabra18G0026400 Salix brachista HOM05D005419 ORTHO05D007365 2.7e-06 56.6 140 30.7
Thecc.02G021400 Theobroma cacao HOM05D007656 ORTHO05D008529 7.7e-06 55.1 121 31.4


User provided reference genes

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