Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g06570 Fragaria vesca HOM05D007656 ORTHO05D008529 2.0e-155 552.4 274 100.0
FAN15G0049 Fragaria x ananassa HOM05D007656 ORTHO05D008529 7.6e-147 523.9 274 95.6
Prupe.8G119800 Prunus persica HOM05D000005 ORTHO05D000012 4.2e-44 182.6 188 52.1
Prupe.8G120400 Prunus persica HOM05D000005 ORTHO05D000012 5.4e-44 182.2 177 57.1
Prupe.8G119700 Prunus persica HOM05D007656 ORTHO05D008529 4.6e-43 179.1 134 64.2
RcHm_v2.0_Chr6g0276271 Rosa chinensis HOM05D000005 ORTHO05D008529 1.0e-42 177.9 151 60.9
MD15G1057200 Malus domestica HOM05D000521 ORTHO05D008529 1.5e-41 174.1 147 58.5
Prupe.5G012700 Prunus persica HOM05D007656 ORTHO05D008529 1.3e-40 171.0 167 53.9
RcHm_v2.0_Chr6g0276291 Rosa chinensis HOM05D000005 ORTHO05D008529 3.7e-40 169.5 140 60.7
Prupe.5G012500 Prunus persica HOM05D007656 ORTHO05D008529 6.2e-40 168.7 167 53.3
FAN21G1592 Fragaria x ananassa HOM05D000005 ORTHO05D008529 5.3e-39 165.6 147 57.1
RcHm_v2.0_Chr6g0276251 Rosa chinensis HOM05D000005 ORTHO05D008529 6.9e-39 165.2 141 58.9
FvH4_2g36090 Fragaria vesca HOM05D000005 ORTHO05D008529 5.8e-38 162.2 147 57.1
Prupe.1G197200 Prunus persica HOM05D007656 ORTHO05D008529 5.8e-38 162.2 148 55.4
Prupe.8G120300 Prunus persica HOM05D000005 ORTHO05D000012 4.9e-37 159.1 197 44.2
FvH4_2g14140 Fragaria vesca HOM05D000005 ORTHO05D008529 1.4e-36 157.5 147 56.5
Prupe.5G012300 Prunus persica HOM05D007656 ORTHO05D008529 5.5e-36 155.6 146 56.2
Prupe.4G127700 Prunus persica HOM05D007656 ORTHO05D008529 1.2e-35 154.5 174 50.0
MD07G1045400 Malus domestica HOM05D000009 ORTHO05D000008 1.3e-34 151.0 150 52.7
MD07G1045600 Malus domestica HOM05D000009 ORTHO05D000008 2.3e-34 150.2 157 51.6
MD06G1218400 Malus domestica HOM05D000306 ORTHO05D008529 8.7e-34 148.3 143 54.5
FAN24G2886 Fragaria x ananassa HOM05D000005 ORTHO05D008529 2.5e-33 146.7 182 48.4
FvH4_2g06640 Fragaria vesca HOM05D007656 ORTHO05D008529 4.3e-33 146.0 182 48.4
MD00G1172900 Malus domestica HOM05D000009 ORTHO05D000008 1.6e-32 144.1 151 49.7
FvH4_2g06610 Fragaria vesca HOM05D000005 ORTHO05D008529 3.1e-31 139.8 152 50.0
COL.COLO4_29685 Corchorus olitorius HOM05D007656 ORTHO05D008529 5.3e-31 139.0 153 46.4
RcHm_v2.0_Chr6g0258611 Rosa chinensis HOM05D007656 ORTHO05D008529 9.0e-31 138.3 148 48.6
MD02G1277000 Malus domestica HOM05D007656 ORTHO05D008529 1.5e-30 137.5 148 49.3
Prupe.5G011800 Prunus persica HOM05D007656 ORTHO05D008529 4.9e-29 132.5 159 45.9
Prupe.5G012400 Prunus persica HOM05D007656 ORTHO05D008529 1.9e-28 130.6 139 51.8
MD03G1201200 Malus domestica HOM05D007656 ORTHO05D008529 3.2e-28 129.8 134 50.0
Prupe.5G011700 Prunus persica HOM05D007656 ORTHO05D008529 3.2e-28 129.8 139 51.1
MD07G1044900 Malus domestica HOM05D007656 ORTHO05D008529 2.1e-27 127.1 138 52.2
MD11G1218200 Malus domestica HOM05D007656 ORTHO05D008529 2.1e-27 127.1 113 54.0
Thecc.01G158100 Theobroma cacao HOM05D007656 ORTHO05D008529 2.1e-27 127.1 147 44.2
Manes.12G099400 Manihot esculenta HOM05D000009 ORTHO05D000008 2.7e-27 126.7 136 46.3
MD05G1139600 Malus domestica HOM05D000494 ORTHO05D008529 7.9e-27 125.2 136 44.1
MD15G1057100 Malus domestica HOM05D007656 ORTHO05D008529 1.5e-25 120.9 108 52.8
Cpa.g.sc87.8 Carica papaya HOM05D000317 ORTHO05D008529 4.3e-25 119.4 172 38.4
FvH4_2g14130 Fragaria vesca HOM05D007656 ORTHO05D029394 7.4e-25 118.6 147 47.6
Atru.chr1.33 Acer truncatum HOM05D007656 ORTHO05D008529 1.3e-24 117.9 132 42.4
Manes.10G012400 Manihot esculenta HOM05D000510 ORTHO05D001548 1.3e-24 117.9 128 46.1
Atru.chr6.33 Acer truncatum HOM05D007656 ORTHO05D008529 1.6e-24 117.5 168 40.5
Manes.10G012500 Manihot esculenta HOM05D000510 ORTHO05D001548 1.6e-24 117.5 135 43.0
Manes.10G012600 Manihot esculenta HOM05D000510 ORTHO05D001548 1.6e-24 117.5 135 43.0
Cpa.g.sc87.14 Carica papaya HOM05D000317 ORTHO05D008529 2.8e-24 116.7 172 37.8
FvH4_2g36100 Fragaria vesca HOM05D000005 ORTHO05D029394 3.7e-24 116.3 147 46.9
Manes.01G113600 Manihot esculenta HOM05D007656 ORTHO05D008529 4.8e-24 115.9 133 42.1
Duzib213G0740 Durio zibethinus HOM05D007656 ORTHO05D008529 6.3e-24 115.5 134 42.5
Manes.10G131300 Manihot esculenta HOM05D007656 ORTHO05D008529 6.3e-24 115.5 172 38.4
Duzib093G1087 Durio zibethinus HOM05D007656 ORTHO05D008529 8.2e-24 115.2 132 42.4
RcHm_v2.0_Chr6g0258551 Rosa chinensis HOM05D007656 ORTHO05D008529 2.4e-23 113.6 142 43.0
Ciclev10002149m.g Citrus clementina HOM05D007656 ORTHO05D008529 3.1e-23 113.2 119 46.2
Prupe.4G212800 Prunus persica HOM05D007656 ORTHO05D008529 1.5e-22 110.9 136 43.4
FAN20G3034 Fragaria x ananassa HOM05D000005 ORTHO05D029394 2.0e-22 110.5 147 46.3
RcHm_v2.0_Chr5g0039451 Rosa chinensis HOM05D007656 ORTHO05D030061 2.0e-22 110.5 153 37.3
Thecc.02G020400 Theobroma cacao HOM05D007656 ORTHO05D008529 2.6e-22 110.2 167 38.9
CARHR110670 Cardamine hirsuta HOM05D000005 ORTHO05D008529 3.4e-22 109.8 131 40.5
BcaC06g31517 Brassica carinata HOM05D000005 ORTHO05D000294 4.5e-22 109.4 135 41.5
FAN24G2255 Fragaria x ananassa HOM05D007656 ORTHO05D008529 7.6e-22 108.6 122 50.8
Manes.10G131200 Manihot esculenta HOM05D007656 ORTHO05D008529 1.0e-21 108.2 151 41.7
Manes.10G012300 Manihot esculenta HOM05D000510 ORTHO05D001548 2.9e-21 106.7 147 40.1
Thecc.02G020200 Theobroma cacao HOM05D007656 ORTHO05D008529 3.8e-21 106.3 131 41.2
Thhalv10002051m.g Eutrema salsugineum HOM05D000005 ORTHO05D008529 6.5e-21 105.5 124 41.1
BolC7t43445H Brassica oleracea HOM05D001366 ORTHO05D008529 8.5e-21 105.1 192 34.4
TWI53G0295 Tripterygium wilfordii HOM05D000694 ORTHO05D008529 8.5e-21 105.1 188 34.6
A06p46380 Brassica napus HOM05D000005 ORTHO05D000294 1.1e-20 104.8 135 40.0
BraA06t27502Z Brassica rapa HOM05D000005 ORTHO05D000294 1.1e-20 104.8 135 40.0
Duzib132G0971 Durio zibethinus HOM05D007656 ORTHO05D008529 1.1e-20 104.8 128 43.0
AT2G20142 Arabidopsis thaliana HOM05D000005 ORTHO05D000294 1.4e-20 104.4 131 39.7
AL3G47945 Arabidopsis lyrata HOM05D000005 ORTHO05D000294 1.9e-20 104.0 122 40.2
THA.LOC104820128 Tarenaya hassleriana HOM05D007656 ORTHO05D008529 1.9e-20 104.0 133 38.3
Atru.chr5.3422 Acer truncatum HOM05D007656 ORTHO05D008529 2.5e-20 103.6 151 38.4
BolC8t51984H Brassica oleracea HOM05D007656 ORTHO05D008529 3.2e-20 103.2 134 38.1
CARHR110660 Cardamine hirsuta HOM05D000005 ORTHO05D008529 3.2e-20 103.2 131 38.2
Ciclev10021347m.g Citrus clementina HOM05D007656 ORTHO05D008529 3.2e-20 103.2 131 39.7
RcHm_v2.0_Chr1g0372601 Rosa chinensis HOM05D007656 ORTHO05D008529 3.2e-20 103.2 72 62.5
BcaC06g34402 Brassica carinata HOM05D000005 ORTHO05D008529 5.5e-20 102.4 191 34.0
C07p29060 Brassica napus HOM05D001366 ORTHO05D008529 5.5e-20 102.4 191 34.0
Thecc.02G020900 Theobroma cacao HOM05D007656 ORTHO05D008529 1.2e-19 101.3 250 30.4
Ciclev10024498m.g Citrus clementina HOM05D007656 ORTHO05D008529 2.7e-19 100.1 132 40.9
Ciclev10003516m.g Citrus clementina HOM05D007656 ORTHO05D008529 3.6e-19 99.8 140 40.0
RcHm_v2.0_Chr6g0276221 Rosa chinensis HOM05D007656 ORTHO05D029394 3.6e-19 99.8 101 49.5
Thecc.07G066400 Theobroma cacao HOM05D000521 ORTHO05D008529 4.6e-19 99.4 123 40.7
Carub.0003s3445 Capsella rubella HOM05D000005 ORTHO05D000294 6.1e-19 99.0 135 40.7
RcHm_v2.0_Chr5g0039471 Rosa chinensis HOM05D007656 ORTHO05D030061 6.1e-19 99.0 137 37.2
Thecc.02G023700 Theobroma cacao HOM05D007656 ORTHO05D008529 1.0e-18 98.2 118 40.7
Ciclev10024525m.g Citrus clementina HOM05D007656 ORTHO05D008529 3.0e-18 96.7 120 41.7
Thecc.02G021500 Theobroma cacao HOM05D007656 ORTHO05D008529 3.0e-18 96.7 126 42.1
Prupe.4G212900 Prunus persica HOM05D007656 ORTHO05D008529 6.7e-18 95.5 112 47.3
Duzib264G0127 Durio zibethinus HOM05D007656 ORTHO05D008529 1.5e-17 94.4 98 48.0
Manes.07G014200 Manihot esculenta HOM05D007656 ORTHO05D008529 1.5e-17 94.4 143 35.7
Manes.07G116400 Manihot esculenta HOM05D007656 ORTHO05D008529 3.3e-17 93.2 139 36.0
Manes.07G014101 Manihot esculenta HOM05D007656 ORTHO05D008529 2.8e-16 90.1 143 34.3
Prupe.8G120000 Prunus persica HOM05D007656 ORTHO05D008529 2.8e-16 90.1 130 39.2
Manes.10G119600 Manihot esculenta HOM05D000138 ORTHO05D008529 4.8e-16 89.4 123 35.0
COL.COLO4_30650 Corchorus olitorius HOM05D007656 ORTHO05D008529 8.2e-16 88.6 128 39.1
Manes.10G119500 Manihot esculenta HOM05D000138 ORTHO05D000078 1.1e-15 88.2 123 34.1
Thecc.02G023800 Theobroma cacao HOM05D007656 ORTHO05D008529 1.4e-15 87.8 132 40.9
Sabra18G0026200 Salix brachista HOM05D007656 ORTHO05D008529 1.8e-15 87.4 185 31.4
Thecc.02G020000 Theobroma cacao HOM05D007656 ORTHO05D008529 1.8e-15 87.4 147 34.7
FvH4_2g06590 Fragaria vesca HOM05D007656 ORTHO05D008529 2.4e-15 87.0 65 73.8
Potri.001G007501 Populus trichocarpa HOM05D007656 ORTHO05D008529 9.1e-15 85.1 139 38.8
Potri.015G125950 Populus trichocarpa HOM05D000521 ORTHO05D008529 1.5e-14 84.3 124 35.5
Sabra19G0012000 Salix brachista HOM05D007656 ORTHO05D008529 1.5e-14 84.3 149 37.6
Thecc.02G020700 Theobroma cacao HOM05D007656 ORTHO05D008529 7.7e-14 82.0 129 38.0
Sabra18G0026100 Salix brachista HOM05D007656 ORTHO05D008529 1.0e-13 81.6 149 31.5
CARHR290800 Cardamine hirsuta HOM05D007656 ORTHO05D008529 1.7e-13 80.9 141 31.2
Potri.018G023600 Populus trichocarpa HOM05D007656 ORTHO05D008529 1.7e-13 80.9 141 34.8
Sabra19G0011600 Salix brachista HOM05D007656 ORTHO05D008529 1.7e-13 80.9 132 40.2
Sabra19G0010500 Salix brachista HOM05D007656 ORTHO05D008529 2.2e-13 80.5 153 37.9
Sp5g20860 Schrenkiella parvula HOM05D000005 ORTHO05D000294 5.0e-13 79.3 110 39.1
Prupe.8G120500 Prunus persica HOM05D007656 ORTHO05D008529 6.5e-13 79.0 138 35.5
Sabra19G0001900 Salix brachista HOM05D007656 ORTHO05D008529 6.5e-13 79.0 124 41.9
Potri.006G267201 Populus trichocarpa HOM05D007656 ORTHO05D008529 8.5e-13 78.6 134 35.8
SabraUnG0004400 Salix brachista HOM05D003906 ORTHO05D004776 8.5e-13 78.6 133 40.6
Potri.T044600 Populus trichocarpa HOM05D000101 ORTHO05D000089 1.1e-12 78.2 153 39.2
Ciclev10003101m.g Citrus clementina HOM05D007656 ORTHO05D008529 1.4e-12 77.8 135 31.1
Manes.04G013200 Manihot esculenta HOM05D000548 ORTHO05D008529 1.9e-12 77.4 155 36.1
Ciclev10002893m.g Citrus clementina HOM05D007656 ORTHO05D008529 5.5e-12 75.9 115 36.5
Cpa.g.sc48.191 Carica papaya HOM05D007656 ORTHO05D008529 9.4e-12 75.1 143 33.6
Sabra19G0011800 Salix brachista HOM05D007656 ORTHO05D008529 1.2e-11 74.7 155 35.5
Ciclev10003595m.g Citrus clementina HOM05D007656 ORTHO05D008529 2.1e-11 73.9 99 38.4
TWI18G0941 Tripterygium wilfordii HOM05D010260 ORTHO05D008529 2.7e-11 73.6 138 35.5
TWI18G1447 Tripterygium wilfordii HOM05D000008 ORTHO05D413543 2.7e-11 73.6 143 33.6
Ciclev10003970m.g Citrus clementina HOM05D007656 ORTHO05D008529 3.6e-11 73.2 88 40.9
Ciclev10003163m.g Citrus clementina HOM05D007656 ORTHO05D008529 4.7e-11 72.8 107 36.4
Ciclev10003708m.g Citrus clementina HOM05D007656 ORTHO05D008529 4.7e-11 72.8 107 38.3
Potri.018G145558 Populus trichocarpa HOM05D000101 ORTHO05D000089 2.3e-10 70.5 147 38.1
Thecc.02G021400 Theobroma cacao HOM05D007656 ORTHO05D008529 2.0e-09 67.4 79 43.0
BcaB07g31570 Brassica carinata HOM05D007656 ORTHO05D008529 3.7e-08 63.2 120 30.0
BcaB07g31574 Brassica carinata HOM05D007656 ORTHO05D008529 3.7e-08 63.2 120 30.0
BcaB07g31565 Brassica carinata HOM05D007656 ORTHO05D008529 4.8e-08 62.8 160 26.2
Sabra06G0209500 Salix brachista HOM05D007656 ORTHO05D008529 8.2e-08 62.0 166 28.3
BcaB01g05192 Brassica carinata HOM05D000005 ORTHO05D018617 1.1e-07 61.6 198 28.3
BolC3t13513H Brassica oleracea HOM05D000005 ORTHO05D018617 2.4e-07 60.5 187 27.8
C03p10340 Brassica napus HOM05D000005 ORTHO05D018617 3.1e-07 60.1 198 28.3
BraA03t10209Z Brassica rapa HOM05D000005 ORTHO05D018617 3.1e-07 60.1 198 28.3
BraA09t37029Z Brassica rapa HOM05D000005 ORTHO05D018617 4.1e-07 59.7 189 24.9
BraA08t32207Z Brassica rapa HOM05D000005 ORTHO05D008529 5.3e-07 59.3 176 25.6
Sabra19G0012300 Salix brachista HOM05D002390 ORTHO05D002846 1.5e-06 57.8 123 36.6
Sabra18G0026400 Salix brachista HOM05D005419 ORTHO05D007365 2.0e-06 57.4 153 27.5
A09p13770 Brassica napus HOM05D000141 ORTHO05D001860 3.4e-06 56.6 130 26.9
BolC9t54555H Brassica oleracea HOM05D000005 ORTHO05D018617 3.4e-06 56.6 139 25.2
BcaC04g22696 Brassica carinata HOM05D000005 ORTHO05D018617 5.9e-06 55.8 139 25.2
C09p16450 Brassica napus HOM05D000141 ORTHO05D001860 5.9e-06 55.8 139 25.2
COL.COLO4_00626 Corchorus olitorius HOM05D007656 ORTHO05D008529 5.9e-06 55.8 130 30.8
Manes.11G004300 Manihot esculenta HOM05D007656 ORTHO05D008529 7.7e-06 55.5 114 34.2


User provided reference genes

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