Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g06280 Fragaria vesca HOM05D000838 ORTHO05D045387 9.8e-34 146.4 81 100.0
FAN24G2820 Fragaria x ananassa HOM05D000838 ORTHO05D045387 6.3e-33 143.7 81 98.8
FAN15G0539 Fragaria x ananassa HOM05D000838 ORTHO05D000656 2.0e-31 138.7 81 95.1
RcHm_v2.0_Chr6g0256841 Rosa chinensis HOM05D000838 ORTHO05D000656 3.9e-22 107.8 82 75.6
MD05G1079200 Malus domestica HOM05D000838 ORTHO05D000656 3.4e-18 94.7 81 67.9
Prupe.8G122800 Prunus persica HOM05D000838 ORTHO05D000656 1.2e-15 86.3 81 59.3
MD10G1093200 Malus domestica HOM05D000838 ORTHO05D000656 1.0e-14 83.2 81 59.3
RcHm_v2.0_Chr6g0256811 Rosa chinensis HOM05D000838 ORTHO05D000656 5.0e-14 80.9 81 56.8
Manes.12G155800 Manihot esculenta HOM05D000838 ORTHO05D000656 1.5e-13 79.3 81 53.1
Sabra14G0055400 Salix brachista HOM05D000838 ORTHO05D000656 1.9e-13 79.0 81 56.8
FvH4_2g06310 Fragaria vesca HOM05D000838 ORTHO05D000656 3.3e-13 78.2 81 55.6
FAN15G1741 Fragaria x ananassa HOM05D000838 ORTHO05D000656 4.3e-13 77.8 81 55.6
Haze_01839 Corylus avellana HOM05D000838 ORTHO05D000656 2.1e-12 75.5 81 49.4
Lj4g0026222 Lotus japonicus HOM05D000838 ORTHO05D000656 2.1e-12 75.5 81 56.8
Potri.018G140700 Populus trichocarpa HOM05D000838 ORTHO05D000656 2.1e-12 75.5 81 53.1
Cfa005473 Carpinus fangiana HOM05D000838 ORTHO05D000656 3.6e-12 74.7 80 50.0
Ciclev10030084m.g Citrus clementina HOM05D000838 ORTHO05D000656 6.2e-12 73.9 81 53.1
Sabra15G0075900 Salix brachista HOM05D000838 ORTHO05D000656 6.2e-12 73.9 81 54.3
Haze_01844 Corylus avellana HOM05D000838 ORTHO05D000656 1.1e-11 73.2 81 48.1
Potri.009G103300 Populus trichocarpa HOM05D000838 ORTHO05D000656 1.4e-11 72.8 81 54.3
QL11p036115 Quercus lobata HOM05D000838 ORTHO05D000656 1.4e-11 72.8 80 51.2
Sabra09G0079100 Salix brachista HOM05D000838 ORTHO05D000656 3.1e-11 71.6 79 55.7
Glyma.01G244800 Glycine max HOM05D000838 ORTHO05D000656 5.2e-11 70.9 81 50.6
CANSAT25G2449 Cannabis sativa HOM05D000838 ORTHO05D000656 2.0e-10 68.9 81 45.7
CiPaw.05G052100 Carya illinoinensis HOM05D000838 ORTHO05D000656 3.4e-10 68.2 81 46.9
Dinv42145 Davidia involucrata HOM05D000838 ORTHO05D000656 1.3e-09 66.2 83 53.0
Ciclev10028399m.g Citrus clementina HOM05D000838 ORTHO05D000656 1.7e-09 65.9 87 49.4
GSVIVG01031762001 Vitis vinifera HOM05D000838 ORTHO05D000656 6.4e-09 63.9 82 51.2
Eucgr.G01458 Eucalyptus grandis HOM05D000838 ORTHO05D000656 1.1e-08 63.2 81 46.9
PGR042G1151 Punica granatum HOM05D000838 ORTHO05D000656 1.9e-08 62.4 83 48.2
Rhsim05G0083100 Rhododendron simsii HOM05D000838 ORTHO05D000656 1.9e-08 62.4 81 45.7
PGR042G1266 Punica granatum HOM05D000838 ORTHO05D000656 3.2e-08 61.6 81 49.4
Actinidia17862 Actinidia chinensis HOM05D000838 ORTHO05D000656 5.4e-08 60.8 82 45.1
Prupe.8G122600 Prunus persica HOM05D000838 ORTHO05D000656 5.4e-08 60.8 81 50.6
Cpa.g.sc62.24 Carica papaya HOM05D000838 ORTHO05D000656 7.1e-08 60.5 81 45.7
Potri.004G141800 Populus trichocarpa HOM05D000838 ORTHO05D000656 7.1e-08 60.5 86 44.2
TAR628G1072 Trochodendron aralioides HOM05D000838 ORTHO05D000656 9.2e-08 60.1 87 43.7
Atru.chr5.2737 Acer truncatum HOM05D000838 ORTHO05D000656 1.2e-07 59.7 81 45.7
CSS0004698 Camellia sinensis var. sinensis HOM05D000838 ORTHO05D000656 2.1e-07 58.9 82 45.1
CSS0008602 Camellia sinensis var. sinensis HOM05D000838 ORTHO05D000656 2.1e-07 58.9 82 45.1
COL.COLO4_12449 Corchorus olitorius HOM05D000447 ORTHO05D000315 2.1e-07 58.9 82 43.9
Thecc.02G099200 Theobroma cacao HOM05D000838 ORTHO05D000656 2.1e-07 58.9 82 43.9
Actinidia00449 Actinidia chinensis HOM05D000838 ORTHO05D000656 2.7e-07 58.5 83 47.0
MD10G1093000 Malus domestica HOM05D000838 ORTHO05D000656 2.7e-07 58.5 82 48.8
Sabra07G0037700 Salix brachista HOM05D000838 ORTHO05D000656 2.7e-07 58.5 87 46.0
Rhsim11G0166600 Rhododendron simsii HOM05D000838 ORTHO05D000656 3.5e-07 58.2 85 42.4
Rhsim11G0166700 Rhododendron simsii HOM05D000838 ORTHO05D000656 3.5e-07 58.2 85 44.7
PSO675G4528 Papaver somniferum HOM05D000838 ORTHO05D000656 4.6e-07 57.8 87 43.7
PGR142G0798 Punica granatum HOM05D000838 ORTHO05D000656 4.6e-07 57.8 81 44.4
PGR142G3367 Punica granatum HOM05D000838 ORTHO05D000656 4.6e-07 57.8 81 44.4
PGR142G3670 Punica granatum HOM05D000838 ORTHO05D000656 4.6e-07 57.8 81 44.4
Cc07_g05930 Coffea canephora HOM05D000838 ORTHO05D000656 7.8e-07 57.0 87 42.5
Sed0001767 Sechium edule HOM05D000838 ORTHO05D000656 7.8e-07 57.0 81 37.0
Atru.chr5.2739 Acer truncatum HOM05D000838 ORTHO05D000656 1.0e-06 56.6 87 43.7
RcHm_v2.0_Chr6g0256821 Rosa chinensis HOM05D000838 ORTHO05D000656 1.0e-06 56.6 81 48.1
Dinv39863 Davidia involucrata HOM05D000838 ORTHO05D000656 1.3e-06 56.2 87 42.5
MD05G1079100 Malus domestica HOM05D000838 ORTHO05D000656 1.7e-06 55.8 82 45.1
Oeu009813.1 Olea europaea HOM05D000838 ORTHO05D000656 1.7e-06 55.8 87 41.4
Potri.009G103400 Populus trichocarpa HOM05D000838 ORTHO05D000656 1.7e-06 55.8 86 41.9
Thecc.01G054300 Theobroma cacao HOM05D000838 ORTHO05D000656 1.7e-06 55.8 87 43.7
vmacro02196 Vaccinium macrocarpon HOM05D000838 ORTHO05D000656 1.7e-06 55.8 83 44.6
Nitab4.5_0001034g0090 Nicotiana tabacum HOM05D000838 ORTHO05D000656 2.3e-06 55.5 87 43.7
CAN.G330.7 Capsicum annuum HOM05D000838 ORTHO05D000656 3.0e-06 55.1 82 45.1
Cc02_g18670 Coffea canephora HOM05D000838 ORTHO05D000656 3.0e-06 55.1 82 41.5
Eucgr.I01218 Eucalyptus grandis HOM05D000838 ORTHO05D000656 3.0e-06 55.1 81 38.3
Gohir.A11G191300 Gossypium hirsutum HOM05D000838 ORTHO05D000656 3.9e-06 54.7 87 41.4
Gohir.D11G198100 Gossypium hirsutum HOM05D000838 ORTHO05D000656 3.9e-06 54.7 87 41.4
Cpa.g.sc55.163 Carica papaya HOM05D000838 ORTHO05D000656 5.1e-06 54.3 87 44.8
Dinv29978 Davidia involucrata HOM05D000838 ORTHO05D000656 5.1e-06 54.3 86 41.9
Duzib052G0760 Durio zibethinus HOM05D000838 ORTHO05D000656 6.6e-06 53.9 86 41.9
Nitab4.5_0000310g0050 Nicotiana tabacum HOM05D000838 ORTHO05D000656 6.6e-06 53.9 87 43.7
vmacro19496 Vaccinium macrocarpon HOM05D000838 ORTHO05D000656 6.6e-06 53.9 81 40.7
Duzib132G0610 Durio zibethinus HOM05D000838 ORTHO05D000656 8.6e-06 53.5 85 40.0
Migut.N01193 Erythranthe guttata HOM05D000838 ORTHO05D000656 8.6e-06 53.5 82 39.0
Gorai.007G212100 Gossypium raimondii HOM05D000838 ORTHO05D000656 8.6e-06 53.5 87 40.2
PGSC0003DMG400021583 Solanum tuberosum HOM05D000838 ORTHO05D000656 8.6e-06 53.5 82 42.7
vmacro19495 Vaccinium macrocarpon HOM05D000838 ORTHO05D000656 8.6e-06 53.5 82 42.7


User provided reference genes

Program Settings