Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g04930 Fragaria vesca HOM05D006511 ORTHO05D007567 1.4e-145 519.6 273 100.0
FAN24G3334 Fragaria x ananassa HOM05D006511 ORTHO05D007567 1.5e-131 473.0 289 89.3
FvH4_2g00330 Fragaria vesca HOM05D006511 ORTHO05D007567 6.7e-95 351.3 262 76.3
FAN24G0692 Fragaria x ananassa HOM05D006511 ORTHO05D007567 5.7e-94 348.2 262 76.0
FAN19G0686 Fragaria x ananassa HOM05D006511 ORTHO05D007567 4.8e-93 345.1 262 76.0
FAN20G0885 Fragaria x ananassa HOM05D006511 ORTHO05D007567 1.0e-87 327.4 212 84.0
RcHm_v2.0_Chr6g0249621 Rosa chinensis HOM05D006511 ORTHO05D007567 4.4e-86 322.0 262 71.0
FAN20G1821 Fragaria x ananassa HOM05D006511 ORTHO05D007567 6.3e-85 318.2 205 87.3
Prupe.8G003600 Prunus persica HOM05D006511 ORTHO05D007567 1.2e-70 270.8 223 69.5
MD05G1006300 Malus domestica HOM05D006511 ORTHO05D007567 1.4e-68 263.8 255 62.7
CiPaw.03G012800 Carya illinoinensis HOM05D006511 ORTHO05D007567 5.6e-57 225.3 223 59.6
Manes.18G109250 Manihot esculenta HOM05D006511 ORTHO05D007567 7.3e-57 224.9 224 58.5
QL09p001374 Quercus lobata HOM05D006511 ORTHO05D007567 1.2e-56 224.2 223 59.6
Dinv22148 Davidia involucrata HOM05D006511 ORTHO05D007567 3.6e-56 222.6 223 56.5
Potri.013G095400 Populus trichocarpa HOM05D006511 ORTHO05D007567 4.0e-55 219.2 223 56.1
TWI12G0802 Tripterygium wilfordii HOM05D006511 ORTHO05D007567 2.2e-53 213.4 223 55.2
Sabra13G0081400 Salix brachista HOM05D006511 ORTHO05D007567 5.1e-50 202.2 223 55.2
Actinidia29367 Actinidia chinensis HOM05D006511 ORTHO05D007567 1.9e-49 200.3 222 53.2
Thecc.08G168400 Theobroma cacao HOM05D006511 ORTHO05D007567 1.2e-48 197.6 223 50.2
CSS0025861 Camellia sinensis var. sinensis HOM05D006511 ORTHO05D007567 2.4e-47 193.4 223 51.6
CANSAT56G0749 Cannabis sativa HOM05D006511 ORTHO05D007567 2.0e-46 190.3 218 54.1
Cfa008039 Carpinus fangiana HOM05D006511 ORTHO05D007567 2.9e-45 186.4 223 51.6
Gohir.D08G249200 Gossypium hirsutum HOM05D006511 ORTHO05D007567 1.1e-44 184.5 223 50.7
Gorai.004G265800 Gossypium raimondii HOM05D006511 ORTHO05D007567 1.9e-44 183.7 223 50.2
Glyma.12G241400 Glycine max HOM05D006511 ORTHO05D007567 4.2e-44 182.6 223 48.4
Lsat_1_v5_gn_1_24541 Lactuca sativa HOM05D006511 ORTHO05D007567 6.0e-43 178.7 224 48.7
Rhsim02G0172300 Rhododendron simsii HOM05D006511 ORTHO05D007567 1.3e-42 177.6 232 49.6
Phvul.011G215700 Phaseolus vulgaris HOM05D006511 ORTHO05D007567 1.7e-42 177.2 224 47.3
TPR.G34175 Trifolium pratense HOM05D006511 ORTHO05D007567 2.3e-42 176.8 229 46.3
Hund17299 Selenicereus undatus HOM05D006511 ORTHO05D007567 3.9e-42 176.0 209 50.2
HanXRQChr04g0102481 Helianthus annuus HOM05D006511 ORTHO05D007567 5.1e-42 175.6 216 45.4
Psat7g227400 Pisum sativum HOM05D006511 ORTHO05D007567 5.1e-42 175.6 222 46.8
Sed0008597 Sechium edule HOM05D006511 ORTHO05D007567 1.1e-41 174.5 230 48.3
Hma1.2p1_1405F.1_g281380 Hydrangea macrophylla HOM05D006511 ORTHO05D007567 1.5e-41 174.1 163 60.1
COL.COLO4_05044 Corchorus olitorius HOM05D006511 ORTHO05D007567 2.5e-41 173.3 209 51.7
Haze_13990 Corylus avellana HOM05D006511 ORTHO05D007567 1.3e-40 171.0 223 48.9
TAR636G2957 Trochodendron aralioides HOM05D006511 ORTHO05D007567 1.3e-40 171.0 218 50.0
Nn5g27238 Nelumbo nucifera HOM05D006511 ORTHO05D007567 2.1e-40 170.2 226 47.3
arahy.Tifrunner.gnm1.ann1.HN79E8 Arachis hypogaea HOM05D006511 ORTHO05D007567 4.0e-39 166.0 274 42.0
Sc01g0000050 Simmondsia chinensis HOM05D006511 ORTHO05D007567 4.0e-39 166.0 228 45.6
CARHR032940 Cardamine hirsuta HOM05D006511 ORTHO05D007567 5.3e-39 165.6 275 42.2
THA.LOC104815798 Tarenaya hassleriana HOM05D006511 ORTHO05D007567 5.3e-39 165.6 216 48.1
PSO384G4286 Papaver somniferum HOM05D006511 ORTHO05D007567 1.2e-38 164.5 220 48.6
HanXRQChr04g0102471 Helianthus annuus HOM05D006511 ORTHO05D007567 2.0e-38 163.7 209 44.5
BcaC05g27802 Brassica carinata HOM05D006511 ORTHO05D007567 1.3e-37 161.0 269 41.6
ECA247G1184 Erigeron canadensis HOM05D006511 ORTHO05D007567 1.3e-37 161.0 216 46.8
AT1G33500 Arabidopsis thaliana HOM05D006511 ORTHO05D007567 2.2e-37 160.2 264 41.3
C05p38000 Brassica napus HOM05D006511 ORTHO05D007567 4.9e-37 159.1 216 45.8
BolC5t32531H Brassica oleracea HOM05D006511 ORTHO05D007567 4.9e-37 159.1 216 45.8
BcaB03g13696 Brassica carinata HOM05D006511 ORTHO05D007567 8.4e-37 158.3 216 46.3
DCAR_014062 Daucus carota HOM05D006511 ORTHO05D007567 1.1e-36 157.9 224 46.4
Carub.0001s3169 Capsella rubella HOM05D006511 ORTHO05D007567 1.4e-36 157.5 272 42.6
Gohir.A08G228900 Gossypium hirsutum HOM05D006511 ORTHO05D007567 3.2e-36 156.4 211 47.4
SGA_v2.0_scaffold118G32636 Striga asiatica HOM05D006511 ORTHO05D007567 4.2e-36 156.0 224 43.3
Sp1g28980 Schrenkiella parvula HOM05D006511 ORTHO05D007567 7.1e-36 155.2 222 44.1
Ciclev10023919m.g Citrus clementina HOM05D006511 ORTHO05D007567 6.0e-35 152.1 142 62.0
Sopen11g020540 Solanum pennellii HOM05D006511 ORTHO05D007567 6.0e-35 152.1 223 42.2
Solyc11g045100.2 Solanum lycopersicum HOM05D006511 ORTHO05D007567 7.8e-35 151.8 218 41.7
Ca_13616_v3 Cicer arietinum L. HOM05D006511 ORTHO05D007567 1.7e-34 150.6 275 40.4
Ca_30187_v3 Cicer arietinum L. HOM05D006511 ORTHO05D007567 1.7e-34 150.6 275 40.4
Sc01g0000180 Simmondsia chinensis HOM05D006511 ORTHO05D007567 2.3e-34 150.2 130 60.0
Lj3g0014137 Lotus japonicus HOM05D006511 ORTHO05D007567 3.0e-34 149.8 262 40.5
Aa31LG6G7970 Aethionema arabicum HOM05D006511 ORTHO05D007567 1.9e-33 147.1 299 39.5
Migut.C01397 Erythranthe guttata HOM05D006511 ORTHO05D007567 1.9e-33 147.1 224 40.6
Eucgr.F04079 Eucalyptus grandis HOM05D006511 ORTHO05D007567 3.3e-33 146.4 119 65.5
BraA05t21311Z Brassica rapa HOM05D006511 ORTHO05D007567 5.6e-33 145.6 231 42.4
AUR62038542 Chenopodium quinoa HOM05D006511 ORTHO05D007567 9.6e-33 144.8 189 48.1
Medtr1g067720 Medicago truncatula HOM05D006511 ORTHO05D007567 1.3e-32 144.4 135 57.0
PGR004G0115 Punica granatum HOM05D006511 ORTHO05D007567 1.3e-32 144.4 216 43.5
Cc10_g16070 Coffea canephora HOM05D006511 ORTHO05D007567 1.1e-31 141.4 206 43.7
VMungo1127G0740 Vigna mungo HOM05D006511 ORTHO05D007567 1.1e-31 141.4 220 41.4
arahy.Tifrunner.gnm1.ann1.VJ45CS Arachis hypogaea HOM05D006511 ORTHO05D007567 2.4e-31 140.2 128 59.4
ClCG11G008290 Citrullus lanatus HOM05D006511 ORTHO05D007567 4.0e-31 139.4 273 38.8
Hma1.2p1_1476F.1_g285820 Hydrangea macrophylla HOM05D006511 ORTHO05D007567 1.3e-29 134.4 164 50.6
Atru.chr13.2578 Acer truncatum HOM05D006511 ORTHO05D007567 3.8e-29 132.9 222 41.4
SalBow7G4276 Salvia bowleyana HOM05D006511 ORTHO05D007567 1.1e-28 131.3 272 35.3
COL.COLO4_05796 Corchorus olitorius HOM05D006511 ORTHO05D007567 5.4e-28 129.0 305 35.4
CDE10G1127 Ceratophyllum demersum HOM05D006511 ORTHO05D007567 2.1e-27 127.1 128 52.3
MBI15_g27824_MAGBIO Magnolia biondii HOM05D006511 ORTHO05D007567 2.1e-27 127.1 128 53.1
PGSC0003DMG401019059 Solanum tuberosum HOM05D006511 ORTHO05D007567 2.1e-27 127.1 206 39.3
Thhalv10008295m.g Eutrema salsugineum HOM05D006511 ORTHO05D007567 2.7e-27 126.7 229 38.4
MELO3C008102.2 Cucumis melo HOM05D006511 ORTHO05D007567 3.5e-27 126.3 231 39.4
MBI15_g27821_MAGBIO Magnolia biondii HOM05D006511 ORTHO05D007567 7.9e-27 125.2 161 46.0
Haze_13992 Corylus avellana HOM05D006511 ORTHO05D007567 1.3e-24 117.9 81 77.8
Lj8A308G12 Lonicera japonica HOM05D006511 ORTHO05D007567 3.7e-24 116.3 132 53.8
Aqoxy6G00041 Aquilegia oxysepala HOM05D006511 ORTHO05D007567 1.4e-23 114.4 128 50.8
EL10Ac1g01283 Beta vulgaris HOM05D006511 ORTHO05D007567 1.5e-22 110.9 216 37.5
AUR62013391 Chenopodium quinoa HOM05D006511 ORTHO05D007567 1.5e-22 110.9 173 42.2
HPP92_003819 Vanilla planifolia HOM05D006511 ORTHO05D007567 5.8e-22 109.0 127 46.5
vmacro11027 Vaccinium macrocarpon HOM05D006511 ORTHO05D007567 7.6e-22 108.6 154 45.5
Os08g0320300 Oryza sativa ssp. japonica HOM05D006511 ORTHO05D007567 4.2e-20 102.8 128 46.1
CsaV3_2G033310 Cucumis sativus L. HOM05D006511 ORTHO05D007567 9.3e-20 101.7 237 35.0
unitig_749.g13868 Utricularia gibba HOM05D006511 ORTHO05D007567 3.0e-18 96.7 90 58.9
COL.COLO4_36458 Corchorus olitorius HOM05D006511 ORTHO05D007567 1.4e-15 87.8 80 60.0
Ah.13g067720 Amaranthus hybridus HOM05D006511 ORTHO05D007567 2.6e-14 83.6 190 35.3
Lalb_Chr19g0131891 Lupinus albus HOM05D006511 ORTHO05D007567 1.0e-13 81.6 100 46.0
Nitab4.5_0001489g0030 Nicotiana tabacum HOM05D006511 ORTHO05D007567 7.9e-11 72.0 220 28.6
Lalb_Chr19g0131881 Lupinus albus HOM05D006511 ORTHO05D007567 1.9e-09 67.4 48 68.8
SMO137G0232 Selaginella moellendorffii HOM05D006511 ORTHO05D007567 4.3e-09 66.2 129 31.8
Peaxi162Scf00078g01026 Petunia axillaris HOM05D006511 ORTHO05D007567 7.4e-09 65.5 220 29.1
Zm00001eb028220 Zea mays HOM05D006511 ORTHO05D007567 9.7e-09 65.1 168 31.0
Nitab4.5_0000009g0490 Nicotiana tabacum HOM05D006511 ORTHO05D007567 1.3e-08 64.7 50 64.0
AL1G47890 Arabidopsis lyrata HOM05D006511 ORTHO05D007567 2.8e-08 63.5 184 30.4


User provided reference genes

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