Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g04480 Fragaria vesca HOM05D006153 ORTHO05D007701 2.3e-69 265.4 128 100.0
FAN24G1230 Fragaria x ananassa HOM05D006153 ORTHO05D007701 2.5e-68 261.9 128 98.4
FAN20G1027 Fragaria x ananassa HOM05D006153 ORTHO05D007701 1.8e-61 239.2 120 94.2
FAN27G0726 Fragaria x ananassa HOM05D006153 ORTHO05D007701 2.1e-59 232.3 120 91.7
FAN15G1936 Fragaria x ananassa HOM05D006153 ORTHO05D007701 6.2e-59 230.7 120 91.7
RcHm_v2.0_Chr6g0253971 Rosa chinensis HOM05D006153 ORTHO05D007701 4.9e-56 221.1 128 82.0
Prupe.8G140400 Prunus persica HOM05D006153 ORTHO05D007701 3.1e-34 148.7 118 66.1
MD05G1096000 Malus domestica HOM05D006153 ORTHO05D007701 1.3e-32 143.3 133 59.4
MD10G1102200 Malus domestica HOM05D006153 ORTHO05D007701 1.1e-31 140.2 127 59.8
Duzib132G0541 Durio zibethinus HOM05D006153 ORTHO05D007701 6.7e-21 104.4 113 52.2
Manes.07G064400 Manihot esculenta HOM05D006153 ORTHO05D007701 9.7e-20 100.5 120 48.3
CiPaw.05G015200 Carya illinoinensis HOM05D006153 ORTHO05D007701 2.2e-19 99.4 110 55.5
TAR381G0917 Trochodendron aralioides HOM05D006153 ORTHO05D007701 1.4e-18 96.7 115 48.7
Gohir.A01G008400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 2.4e-18 95.9 122 46.7
Thecc.02G113400 Theobroma cacao HOM05D006153 ORTHO05D007701 4.1e-18 95.1 114 45.6
Haze_10254 Corylus avellana HOM05D006153 ORTHO05D007701 5.3e-18 94.7 112 48.2
Duzib052G0610 Durio zibethinus HOM05D006153 ORTHO05D007701 7.0e-18 94.4 123 51.2
Gorai.002G009800 Gossypium raimondii HOM05D006153 ORTHO05D007701 1.2e-17 93.6 122 46.7
Dinv42217 Davidia involucrata HOM05D006153 ORTHO05D007701 1.6e-17 93.2 111 47.7
Peaxi162Scf00152g00320 Petunia axillaris HOM05D006153 ORTHO05D007701 2.0e-17 92.8 84 58.3
Potri.009G091100 Populus trichocarpa HOM05D006153 ORTHO05D007701 2.0e-17 92.8 113 49.6
Phvul.007G043000 Phaseolus vulgaris HOM05D006153 ORTHO05D007701 2.6e-17 92.4 103 52.4
GSVIVG01037873001 Vitis vinifera HOM05D006153 ORTHO05D007701 2.6e-17 92.4 108 49.1
QL11p031990 Quercus lobata HOM05D006153 ORTHO05D007701 3.5e-17 92.0 96 53.1
GSVIVG01037872001 Vitis vinifera HOM05D006153 ORTHO05D007701 3.5e-17 92.0 109 51.4
Nitab4.5_0004685g0060 Nicotiana tabacum HOM05D006153 ORTHO05D007701 4.5e-17 91.7 94 53.2
Actinidia34374 Actinidia chinensis HOM05D006153 ORTHO05D007701 5.9e-17 91.3 114 47.4
Glyma.10G259200 Glycine max HOM05D006153 ORTHO05D007701 1.0e-16 90.5 102 50.0
GSVIVG01037871001 Vitis vinifera HOM05D006153 ORTHO05D007701 1.0e-16 90.5 110 50.9
Lalb_Chr06g0165291 Lupinus albus HOM05D006153 ORTHO05D007701 1.7e-16 89.7 113 44.2
VMungo0720G0345 Vigna mungo HOM05D006153 ORTHO05D007701 1.7e-16 89.7 103 50.5
Sabra16G0186000 Salix brachista HOM05D006153 ORTHO05D007701 2.9e-16 89.0 106 50.0
Gohir.D13G044400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 3.8e-16 88.6 120 44.2
Gorai.013G049200 Gossypium raimondii HOM05D006153 ORTHO05D007701 3.8e-16 88.6 120 44.2
Potri.001G296900 Populus trichocarpa HOM05D006153 ORTHO05D007701 3.8e-16 88.6 114 46.5
Dinv15786 Davidia involucrata HOM05D006153 ORTHO05D007701 5.0e-16 88.2 119 45.4
Haze_10299 Corylus avellana HOM05D006153 ORTHO05D007701 6.5e-16 87.8 111 49.5
Cpa.g.sc200.7 Carica papaya HOM05D006153 ORTHO05D007701 1.1e-15 87.0 110 47.3
Lj5g0020623 Lotus japonicus HOM05D006153 ORTHO05D007701 1.5e-15 86.7 104 50.0
CANSAT25G0942 Cannabis sativa HOM05D006153 ORTHO05D007701 1.9e-15 86.3 67 61.2
Glyma.20G131700 Glycine max HOM05D006153 ORTHO05D007701 1.9e-15 86.3 102 49.0
TWI23G0900 Tripterygium wilfordii HOM05D006153 ORTHO05D007701 2.5e-15 85.9 108 46.3
Eucgr.G00438 Eucalyptus grandis HOM05D006153 ORTHO05D007701 3.2e-15 85.5 108 46.3
Peaxi162Scf00016g00267 Petunia axillaris HOM05D006153 ORTHO05D007701 4.2e-15 85.1 84 53.6
Lj5g0024415 Lotus japonicus HOM05D006153 ORTHO05D007701 7.2e-15 84.3 101 48.5
QL11p029270 Quercus lobata HOM05D006153 ORTHO05D007701 9.4e-15 84.0 114 48.2
COL.COLO4_32545 Corchorus olitorius HOM05D006153 ORTHO05D007701 1.2e-14 83.6 108 45.4
Solyc01g107280.3 Solanum lycopersicum HOM05D006153 ORTHO05D007701 1.6e-14 83.2 119 43.7
Ciclev10029838m.g Citrus clementina HOM05D006153 ORTHO05D007701 2.1e-14 82.8 118 40.7
Nitab4.5_0001105g0220 Nicotiana tabacum HOM05D006153 ORTHO05D007701 2.1e-14 82.8 87 54.0
PGR042G3678 Punica granatum HOM05D006153 ORTHO05D007701 2.1e-14 82.8 109 44.0
arahy.Tifrunner.gnm1.ann1.EHR7LK Arachis hypogaea HOM05D006153 ORTHO05D007701 2.7e-14 82.4 101 49.5
Cfa004694 Carpinus fangiana HOM05D006153 ORTHO05D007701 2.7e-14 82.4 114 46.5
Nitab4.5_0012681g0010 Nicotiana tabacum HOM05D006153 ORTHO05D007701 2.7e-14 82.4 87 52.9
Nn5g30510 Nelumbo nucifera HOM05D006153 ORTHO05D007701 3.6e-14 82.0 54 68.5
Sopen01g049530 Solanum pennellii HOM05D006153 ORTHO05D007701 3.6e-14 82.0 90 55.6
Manes.10G074900 Manihot esculenta HOM05D006153 ORTHO05D007701 6.1e-14 81.3 117 42.7
CSS0010428 Camellia sinensis var. sinensis HOM05D006153 ORTHO05D007701 8.0e-14 80.9 108 44.4
Cfa004655 Carpinus fangiana HOM05D006153 ORTHO05D007701 8.0e-14 80.9 95 47.4
Sc14g0002580 Simmondsia chinensis HOM05D006153 ORTHO05D007701 8.0e-14 80.9 98 44.9
AL3G32960 Arabidopsis lyrata HOM05D006153 ORTHO05D007701 1.0e-13 80.5 50 72.0
Lj1g0020403 Lotus japonicus HOM05D006153 ORTHO05D007701 1.0e-13 80.5 109 43.1
Nitab4.5_0002017g0030 Nicotiana tabacum HOM05D006153 ORTHO05D007701 1.0e-13 80.5 85 54.1
Peaxi162Scf00003g00261 Petunia axillaris HOM05D006153 ORTHO05D007701 1.8e-13 79.7 91 50.5
Sabra09G0070400 Salix brachista HOM05D006153 ORTHO05D007701 1.8e-13 79.7 108 44.4
AT3G19550 Arabidopsis thaliana HOM05D006153 ORTHO05D007701 4.0e-13 78.6 50 70.0
BcaC05g28465 Brassica carinata HOM05D006153 ORTHO05D007701 4.0e-13 78.6 49 69.4
A05p30090 Brassica napus HOM05D006153 ORTHO05D007701 4.0e-13 78.6 49 69.4
C05p45510 Brassica napus HOM05D006153 ORTHO05D007701 4.0e-13 78.6 49 69.4
BolC5t33274H Brassica oleracea HOM05D006153 ORTHO05D007701 4.0e-13 78.6 49 69.4
BraA05t21849Z Brassica rapa HOM05D006153 ORTHO05D007701 4.0e-13 78.6 49 69.4
Haze_10289 Corylus avellana HOM05D006153 ORTHO05D007701 4.0e-13 78.6 116 43.1
Sp3g17600 Schrenkiella parvula HOM05D006153 ORTHO05D007701 5.2e-13 78.2 120 41.7
PGSC0003DMG400025850 Solanum tuberosum HOM05D006153 ORTHO05D007701 5.2e-13 78.2 87 51.7
CARHR094970 Cardamine hirsuta HOM05D006153 ORTHO05D007701 8.8e-13 77.4 50 70.0
BcaB06g26014 Brassica carinata HOM05D006153 ORTHO05D007701 1.2e-12 77.0 49 67.3
PSO541G5112 Papaver somniferum HOM05D006153 ORTHO05D007701 1.2e-12 77.0 114 44.7
AUR62027357 Chenopodium quinoa HOM05D006153 ORTHO05D007701 1.5e-12 76.6 60 55.0
Carub.0003s1938 Capsella rubella HOM05D006153 ORTHO05D007701 2.0e-12 76.3 119 40.3
Hund06709 Selenicereus undatus HOM05D006153 ORTHO05D007701 2.6e-12 75.9 92 44.6
Thhalv10021914m.g Eutrema salsugineum HOM05D006153 ORTHO05D007701 4.4e-12 75.1 110 41.8
MBI16_g15146_MAGBIO Magnolia biondii HOM05D006153 ORTHO05D007701 4.4e-12 75.1 116 41.4
AUR62031329 Chenopodium quinoa HOM05D006153 ORTHO05D007701 5.7e-12 74.7 92 40.2
Actinidia27982 Actinidia chinensis HOM05D006153 ORTHO05D007701 7.5e-12 74.3 106 41.5
DCAR_001674 Daucus carota HOM05D006153 ORTHO05D007701 7.5e-12 74.3 59 57.6
DCAR_003609 Daucus carota HOM05D006153 ORTHO05D007701 9.8e-12 73.9 66 57.6
BcaB04g20696 Brassica carinata HOM05D006153 ORTHO05D007701 1.3e-11 73.6 110 42.7
DCAR_001679 Daucus carota HOM05D006153 ORTHO05D007701 1.3e-11 73.6 112 42.9
Lalb_Chr02g0145121 Lupinus albus HOM05D006153 ORTHO05D007701 1.3e-11 73.6 102 45.1
Rhsim05G0089900 Rhododendron simsii HOM05D006153 ORTHO05D007701 1.3e-11 73.6 51 62.7
A01p35130 Brassica napus HOM05D006153 ORTHO05D007701 3.7e-11 72.0 107 42.1
BraA01t03595Z Brassica rapa HOM05D006153 ORTHO05D007701 3.7e-11 72.0 107 42.1
EL10Ac8g19360 Beta vulgaris HOM05D006153 ORTHO05D007701 6.3e-11 71.2 60 56.7
A01p35140 Brassica napus HOM05D006153 ORTHO05D007701 8.3e-11 70.9 49 65.3
BraA01t03596Z Brassica rapa HOM05D006153 ORTHO05D007701 8.3e-11 70.9 49 65.3
Hma1.2p1_1174F.1_g263880 Hydrangea macrophylla HOM05D006153 ORTHO05D007701 8.3e-11 70.9 108 42.6
Sed0025917 Sechium edule HOM05D006153 ORTHO05D007701 1.8e-10 69.7 63 55.6
BcaC09g48920 Brassica carinata HOM05D006153 ORTHO05D007701 2.4e-10 69.3 108 40.7
C01p44580 Brassica napus HOM05D006153 ORTHO05D007701 2.4e-10 69.3 108 40.7
Aqoxy6G02752 Aquilegia oxysepala HOM05D006153 ORTHO05D007701 5.4e-10 68.2 56 53.6
Thhalv10021904m.g Eutrema salsugineum HOM05D006153 ORTHO05D007701 7.0e-10 67.8 49 63.3
ATR0030G019 Amborella trichopoda HOM05D006153 ORTHO05D007701 9.1e-10 67.4 46 58.7
BolC1t04422H Brassica oleracea HOM05D006153 ORTHO05D007701 9.1e-10 67.4 108 39.8
Aa31LG8G6290 Aethionema arabicum HOM05D006153 ORTHO05D007701 1.2e-09 67.0 48 62.5
BcaB04g20697 Brassica carinata HOM05D006153 ORTHO05D007701 1.2e-09 67.0 115 39.1
CsaV3_7G007950 Cucumis sativus L. HOM05D006153 ORTHO05D007701 2.0e-09 66.2 80 47.5
Gohir.A13G045400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 2.0e-09 66.2 86 47.7
Medtr5g005180 Medicago truncatula HOM05D006153 ORTHO05D007701 5.9e-09 64.7 52 55.8
ClCG02G006680 Citrullus lanatus HOM05D006153 ORTHO05D007701 1.0e-08 63.9 89 44.9
Migut.I00275 Erythranthe guttata HOM05D006153 ORTHO05D007701 1.0e-08 63.9 115 36.5
HanXRQChr16g0514451 Helianthus annuus HOM05D006153 ORTHO05D007701 1.3e-08 63.5 110 39.1
Oeu013772.1 Olea europaea HOM05D006153 ORTHO05D007701 1.7e-08 63.2 48 56.2
ECA234G4313 Erigeron canadensis HOM05D006153 ORTHO05D007701 3.8e-08 62.0 59 49.2
Atru.chr1.2756 Acer truncatum HOM05D008232 ORTHO05D010390 6.5e-08 61.2 57 47.4
MELO3C018509.2 Cucumis melo HOM05D006153 ORTHO05D007701 6.5e-08 61.2 85 42.4
ECA234G3366 Erigeron canadensis HOM05D006153 ORTHO05D007701 8.5e-08 60.8 42 59.5
HanXRQChr16g0514921 Helianthus annuus HOM05D006153 ORTHO05D007701 8.5e-08 60.8 108 37.0
SGA_v2.0_scaffold624G53237 Striga asiatica HOM05D006153 ORTHO05D007701 8.5e-08 60.8 110 39.1
Os12g0507700 Oryza sativa ssp. japonica HOM05D006153 ORTHO05D007701 1.1e-07 60.5 88 42.0
Zm00001eb138020 Zea mays HOM05D006153 ORTHO05D007701 1.1e-07 60.5 70 48.6
Psat4g228040 Pisum sativum HOM05D006153 ORTHO05D007701 1.9e-07 59.7 69 43.5
Lsat_1_v5_gn_5_114460 Lactuca sativa HOM05D006153 ORTHO05D007701 7.2e-07 57.8 107 31.8
Zm00001eb264740 Zea mays HOM05D006153 ORTHO05D007701 7.2e-07 57.8 48 56.2
HanXRQChr16g0514901 Helianthus annuus HOM05D006153 ORTHO05D007701 1.6e-06 56.6 108 35.2
PSO782G2603 Papaver somniferum HOM05D008232 ORTHO05D010390 1.6e-06 56.6 79 35.4
PSO478G5163 Papaver somniferum HOM05D008232 ORTHO05D010390 2.1e-06 56.2 84 33.3
TAR383G0592 Trochodendron aralioides HOM05D008232 ORTHO05D010390 2.7e-06 55.8 51 49.0
Cpa.g.sc2471.1 Carica papaya HOM05D008232 ORTHO05D010390 6.1e-06 54.7 67 41.8
HanXRQChr13g0425861 Helianthus annuus HOM05D006153 ORTHO05D007701 6.1e-06 54.7 40 55.0
HanXRQChr16g0514461 Helianthus annuus HOM05D006153 ORTHO05D007701 6.1e-06 54.7 108 34.3


User provided reference genes

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