Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g04342 Fragaria vesca HOM05D002857 ORTHO05D008347 1.0e-128 463.4 235 100.0
RcHm_v2.0_Chr6g0253801 Rosa chinensis HOM05D002857 ORTHO05D008347 1.2e-108 396.7 218 92.7
FAN24G3287 Fragaria x ananassa HOM05D001904 ORTHO05D008347 6.6e-107 391.0 244 84.4
Prupe.8G144800 Prunus persica HOM05D002857 ORTHO05D008347 1.6e-84 316.6 219 75.3
MD05G1100100 Malus domestica HOM05D002857 ORTHO05D008347 3.3e-82 308.9 224 68.3
MD05G1100400 Malus domestica HOM05D002857 ORTHO05D008347 3.3e-82 308.9 224 69.6
CiPaw.05G017800 Carya illinoinensis HOM05D002857 ORTHO05D008347 8.1e-81 304.3 227 68.7
Sabra09G0068300 Salix brachista HOM05D002857 ORTHO05D008347 3.2e-77 292.4 233 66.5
Cfa004654 Carpinus fangiana HOM05D002857 ORTHO05D008347 7.1e-77 291.2 221 67.9
Cfa009507 Carpinus fangiana HOM05D002857 ORTHO05D008347 1.6e-76 290.0 221 67.9
Potri.009G088200 Populus trichocarpa HOM05D002857 ORTHO05D008347 3.5e-76 288.9 232 66.4
CiPaw.06G165500 Carya illinoinensis HOM05D002857 ORTHO05D008347 4.6e-76 288.5 163 84.0
Ciclev10029201m.g Citrus clementina HOM05D002857 ORTHO05D008347 1.3e-75 287.0 229 63.8
Haze_10256 Corylus avellana HOM05D002857 ORTHO05D008347 1.8e-75 286.6 201 70.6
Gorai.008G020300 Gossypium raimondii HOM05D002857 ORTHO05D008347 6.7e-75 284.6 239 62.3
Atru.chr5.2351 Acer truncatum HOM05D002857 ORTHO05D008347 1.9e-74 283.1 237 63.3
Cpa.g.sc106.48 Carica papaya HOM05D002857 ORTHO05D008347 1.9e-74 283.1 225 66.2
Gohir.D12G019900 Gossypium hirsutum HOM05D002857 ORTHO05D008347 3.3e-74 282.3 239 61.9
Manes.10G081600 Manihot esculenta HOM05D002857 ORTHO05D008347 4.3e-74 282.0 228 64.5
Duzib132G1128 Durio zibethinus HOM05D002857 ORTHO05D008347 1.3e-73 280.4 224 64.7
Gohir.A12G019700 Gossypium hirsutum HOM05D002857 ORTHO05D008347 1.3e-73 280.4 239 61.5
QL07p014115 Quercus lobata HOM05D002857 ORTHO05D008347 1.3e-73 280.4 163 82.2
GSVIVG01037837001 Vitis vinifera HOM05D002857 ORTHO05D008347 2.8e-73 279.3 163 82.2
Cfa010108 Carpinus fangiana HOM05D002857 ORTHO05D008347 4.8e-73 278.5 222 65.3
Potri.001G293700 Populus trichocarpa HOM05D002857 ORTHO05D008347 4.8e-73 278.5 235 61.7
TAR381G0590 Trochodendron aralioides HOM05D002857 ORTHO05D008347 8.2e-73 277.7 218 67.4
Eucgr.I01062 Eucalyptus grandis HOM05D002857 ORTHO05D008347 1.1e-72 277.3 222 61.7
Dinv15807 Davidia involucrata HOM05D002857 ORTHO05D008347 1.8e-72 276.6 163 81.0
Actinidia34361 Actinidia chinensis HOM05D002857 ORTHO05D008347 2.4e-72 276.2 165 80.0
Thecc.02G117000 Theobroma cacao HOM05D002857 ORTHO05D008347 2.4e-72 276.2 234 62.8
PGR120G0011 Punica granatum HOM05D002857 ORTHO05D008347 3.1e-72 275.8 217 65.9
PGR142G0748 Punica granatum HOM05D002857 ORTHO05D008347 3.1e-72 275.8 217 65.9
CSS0041876 Camellia sinensis var. sinensis HOM05D002857 ORTHO05D008347 5.3e-72 275.0 200 68.0
COL.COLO4_32514 Corchorus olitorius HOM05D002857 ORTHO05D007919 9.0e-72 274.2 189 69.8
vmacro19465 Vaccinium macrocarpon HOM05D002857 ORTHO05D008347 9.0e-72 274.2 163 76.7
vmacro23229 Vaccinium macrocarpon HOM05D002857 ORTHO05D008347 9.0e-72 274.2 163 76.7
Psat0s3618g0120 Pisum sativum HOM05D002857 ORTHO05D008347 2.0e-71 273.1 204 67.2
TWI14G1023 Tripterygium wilfordii HOM05D002857 ORTHO05D008347 2.0e-71 273.1 188 72.9
MSTRG.27764 Avicennia marina HOM05D002857 ORTHO05D008347 4.5e-71 271.9 227 60.8
Phvul.003G185000 Phaseolus vulgaris HOM05D002857 ORTHO05D008347 5.9e-71 271.6 167 76.6
Oeu010450.1 Olea europaea HOM05D002857 ORTHO05D008347 1.7e-70 270.0 169 76.9
Medtr4g109520 Medicago truncatula HOM05D002857 ORTHO05D008347 3.8e-70 268.9 167 75.4
Lalb_Chr06g0165111 Lupinus albus HOM05D002857 ORTHO05D008347 5.0e-70 268.5 186 70.4
TPR.G2009 Trifolium pratense HOM05D002857 ORTHO05D008347 6.5e-70 268.1 184 70.7
SGA_v2.0_scaffold219G42527 Striga asiatica HOM05D002857 ORTHO05D008347 8.4e-70 267.7 182 68.1
Lsat_1_v5_gn_1_103341 Lactuca sativa HOM05D002857 ORTHO05D008347 1.1e-69 267.3 233 60.9
Glyma.17G078200 Glycine max HOM05D002857 ORTHO05D008347 1.4e-69 266.9 167 74.9
Nn5g30580 Nelumbo nucifera HOM05D002857 ORTHO05D008347 1.4e-69 266.9 244 59.4
DCAR_001699 Daucus carota HOM05D002857 ORTHO05D008347 2.5e-69 266.2 227 59.5
HanXRQChr01g0025491 Helianthus annuus HOM05D002857 ORTHO05D008347 2.5e-69 266.2 180 71.7
MELO3C018011.2 Cucumis melo HOM05D002857 ORTHO05D008347 4.2e-69 265.4 217 60.8
Lj4g0011899 Lotus japonicus HOM05D002857 ORTHO05D008347 5.5e-69 265.0 234 59.8
CANSAT35G0667 Cannabis sativa HOM05D002857 ORTHO05D008347 9.3e-69 264.2 193 66.8
ClCG10G010270 Citrullus lanatus HOM05D002857 ORTHO05D008347 2.1e-68 263.1 214 62.1
CsaV3_4G000220 Cucumis sativus L. HOM05D002857 ORTHO05D008347 2.1e-68 263.1 212 60.8
Aqoxy6G02637 Aquilegia oxysepala HOM05D002857 ORTHO05D008347 3.5e-68 262.3 206 62.1
Solyc01g107020.4 Solanum lycopersicum HOM05D002857 ORTHO05D008347 4.6e-68 261.9 236 56.8
CAN.G606.59 Capsicum annuum HOM05D002857 ORTHO05D008347 6.1e-68 261.5 200 65.5
Migut.O00567 Erythranthe guttata HOM05D002857 ORTHO05D008347 7.9e-68 261.2 173 69.9
Lj5A219T41 Lonicera japonica HOM05D002857 ORTHO05D008347 7.9e-68 261.2 160 75.6
PSO541G0380 Papaver somniferum HOM05D002857 ORTHO05D008347 7.9e-68 261.2 208 63.5
Migut.N01136 Erythranthe guttata HOM05D002857 ORTHO05D008347 1.3e-67 260.4 173 69.9
VMungo1215G1881 Vigna mungo HOM05D002857 ORTHO05D008347 1.3e-67 260.4 160 77.5
Ca_21777_v3 Cicer arietinum L. HOM05D002857 ORTHO05D008347 2.3e-67 259.6 163 76.1
Hund00691 Selenicereus undatus HOM05D002857 ORTHO05D008347 3.9e-67 258.8 164 74.4
Nitab4.5_0008075g0040 Nicotiana tabacum HOM05D002857 ORTHO05D008347 5.1e-67 258.5 163 74.2
PSO675G0546 Papaver somniferum HOM05D002857 ORTHO05D008347 1.1e-66 257.3 215 61.9
Sed0016408 Sechium edule HOM05D002857 ORTHO05D008347 1.1e-66 257.3 193 64.2
Cc02_g19860 Coffea canephora HOM05D002857 ORTHO05D008347 1.9e-66 256.5 161 73.3
Peaxi162Scf00016g02839 Petunia axillaris HOM05D002857 ORTHO05D008347 4.3e-66 255.4 163 72.4
SalBow3G3786 Salvia bowleyana HOM05D002857 ORTHO05D008347 4.3e-66 255.4 233 57.9
Sopen01g049290 Solanum pennellii HOM05D002857 ORTHO05D008347 4.3e-66 255.4 163 72.4
EL10Ac9g22202 Beta vulgaris HOM05D002857 ORTHO05D008347 2.2e-65 253.1 166 71.1
Rhsim11G0151500 Rhododendron simsii HOM05D002133 ORTHO05D008347 2.8e-65 252.7 158 74.7
Rhsim11G0152900 Rhododendron simsii HOM05D002133 ORTHO05D008347 2.8e-65 252.7 158 74.7
Nitab4.5_0001105g0010 Nicotiana tabacum HOM05D002857 ORTHO05D008347 3.7e-65 252.3 159 73.0
PGSC0003DMG400025744 Solanum tuberosum HOM05D002857 ORTHO05D008347 3.7e-65 252.3 189 66.7
AUR62027003 Chenopodium quinoa HOM05D002857 ORTHO05D008347 1.5e-63 246.9 163 70.6
unitig_749.g13509 Utricularia gibba HOM05D002857 ORTHO05D008347 7.7e-63 244.6 200 61.5
CDE04G2041 Ceratophyllum demersum HOM05D002857 ORTHO05D008347 8.5e-62 241.1 165 69.7
Nn3g19581 Nelumbo nucifera HOM05D002857 ORTHO05D008347 1.1e-58 230.7 163 69.3
Thhalv10011799m.g Eutrema salsugineum HOM05D002857 ORTHO05D008347 4.3e-58 228.8 165 64.2
BcaB07g33450 Brassica carinata HOM05D002857 ORTHO05D007919 7.4e-58 228.0 165 64.2
BcaC08g43176 Brassica carinata HOM05D002857 ORTHO05D007919 2.8e-57 226.1 165 63.6
A06p03450 Brassica napus HOM05D002857 ORTHO05D008347 2.8e-57 226.1 165 63.6
C06p04760 Brassica napus HOM05D002857 ORTHO05D008347 2.8e-57 226.1 165 63.6
AL1G57550 Arabidopsis lyrata HOM05D002857 ORTHO05D008347 6.3e-57 224.9 161 65.2
Carub.0001s3918 Capsella rubella HOM05D002857 ORTHO05D008347 8.2e-57 224.6 161 65.2
Aa31LG10G4120 Aethionema arabicum HOM05D002857 ORTHO05D008347 4.1e-56 222.2 164 63.4
BolC6t35606H Brassica oleracea HOM05D002857 ORTHO05D008347 4.1e-56 222.2 161 64.6
BraA06t23553Z Brassica rapa HOM05D002857 ORTHO05D008347 4.1e-56 222.2 161 64.6
SpUn0137_0020 Schrenkiella parvula HOM05D002857 ORTHO05D008347 4.1e-56 222.2 165 63.0
HPP92_003268 Vanilla planifolia HOM05D002857 ORTHO05D008347 6.9e-56 221.5 169 62.7
THA.LOC104803442 Tarenaya hassleriana HOM05D002857 ORTHO05D008347 1.0e-54 217.6 183 59.6
Ah.01g006980 Amaranthus hybridus HOM05D002857 ORTHO05D008347 8.5e-54 214.5 139 71.2
Os10g0350800 Oryza sativa ssp. japonica HOM05D002857 ORTHO05D008347 3.6e-52 209.1 178 58.4
Ciclev10007042m.g Citrus clementina HOM05D002857 ORTHO05D008347 2.6e-50 203.0 145 66.9
Zm00001eb019030 Zea mays HOM05D002857 ORTHO05D008347 5.7e-50 201.8 167 58.7
ECA234G2213 Erigeron canadensis HOM05D002857 ORTHO05D008347 2.0e-47 193.4 123 71.5
SMO361G0227 Selaginella moellendorffii HOM05D002857 ORTHO05D008347 4.5e-47 192.2 166 54.8
AagrBONN_evm.TU.Sc2ySwM_228.4585 Anthoceros agrestis HOM05D002857 ORTHO05D008347 8.8e-43 177.9 161 55.9
Pp3c5_10320 Physcomitrium patens HOM05D002857 ORTHO05D008347 1.4e-40 170.6 167 50.9
Glyma.05G021200 Glycine max HOM05D002857 ORTHO05D008347 1.8e-40 170.2 163 55.8
Oeu010448.1 Olea europaea HOM05D002857 ORTHO05D008347 3.1e-40 169.5 112 75.0
Cc06_g00270 Coffea canephora HOM05D002857 ORTHO05D008347 9.1e-40 167.9 139 61.2
arahy.Tifrunner.gnm1.ann1.AK2UKD Arachis hypogaea HOM05D002857 ORTHO05D008347 2.0e-39 166.8 119 69.7
arahy.Tifrunner.gnm1.ann1.9CW0PF Arachis hypogaea HOM05D002857 ORTHO05D008347 5.9e-39 165.2 135 61.5
Ciclev10006219m.g Citrus clementina HOM05D002857 ORTHO05D008347 1.1e-37 161.0 106 73.6
arahy.Tifrunner.gnm1.ann1.JJ1SBB Arachis hypogaea HOM05D002857 ORTHO05D008347 1.9e-37 160.2 111 70.3
Mapoly0121s0028 Marchantia polymorpha HOM05D002857 ORTHO05D008347 8.0e-36 154.8 194 44.3
Rhsim11G0151300 Rhododendron simsii HOM05D002133 ORTHO05D002256 3.4e-34 149.4 90 74.4
CBR_g3894 Chara braunii HOM05D002857 ORTHO05D008347 2.7e-31 139.8 212 42.0
SEGI_03434 Sequoiadendron giganteum HOM05D002857 ORTHO05D008347 2.0e-26 123.6 116 52.6
MCO12G139 Micromonas commoda HOM05D002857 ORTHO05D008347 3.5e-23 112.8 155 40.6
Cre05.g247150 Chlamydomonas reinhardtii HOM05D002857 ORTHO05D008347 5.9e-23 112.1 201 32.3
PRCOL_00006372 Prasinoderma coloniale HOM05D002857 ORTHO05D008347 3.6e-20 102.8 164 37.8
QL11p030572 Quercus lobata HOM05D002857 ORTHO05D008347 4.0e-19 99.4 53 83.0
Cfa021534 Carpinus fangiana HOM05D002857 ORTHO05D008347 1.8e-16 90.5 56 73.2
AUR62030843 Chenopodium quinoa HOM05D002857 ORTHO05D008347 3.2e-16 89.7 56 71.4
Sc18g0007410 Simmondsia chinensis HOM05D002857 ORTHO05D008347 1.1e-13 81.3 54 64.8
Sc18g0007450 Simmondsia chinensis HOM05D002857 ORTHO05D008347 1.1e-13 81.3 54 64.8
CARHR040040 Cardamine hirsuta HOM05D002857 ORTHO05D008347 8.0e-12 75.1 67 53.7
Nn5g29163 Nelumbo nucifera HOM05D002857 ORTHO05D008347 1.7e-09 67.4 35 85.7
Sabra16G0183400 Salix brachista HOM05D002857 ORTHO05D008347 7.8e-07 58.5 148 33.8


User provided reference genes

Program Settings