Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g03920 Fragaria vesca HOM05D005449 ORTHO05D006916 5.1e-67 257.7 136 100.0
FAN20G1025 Fragaria x ananassa HOM05D005449 ORTHO05D006916 3.6e-65 251.5 136 97.1
FAN27G2298 Fragaria x ananassa HOM05D005449 ORTHO05D006916 2.4e-64 248.8 136 95.6
FAN15G2928 Fragaria x ananassa HOM05D005449 ORTHO05D006916 3.1e-64 248.4 136 95.6
RcHm_v2.0_Chr6g0252971 Rosa chinensis HOM05D005449 ORTHO05D006916 8.4e-62 240.4 136 91.9
RcHm_v2.0_Chr6g0252941 Rosa chinensis HOM05D005449 ORTHO05D006916 7.1e-61 237.3 136 91.2
Cfa005902 Carpinus fangiana HOM05D005449 ORTHO05D006916 3.2e-53 211.8 142 81.0
Prupe.8G140700 Prunus persica HOM05D005449 ORTHO05D006916 2.1e-52 209.1 143 78.3
Sed0024679 Sechium edule HOM05D005449 ORTHO05D006916 2.7e-52 208.8 142 80.3
QL12p028306 Quercus lobata HOM05D005449 ORTHO05D006916 3.5e-52 208.4 141 78.7
MD05G1096300 Malus domestica HOM05D005449 ORTHO05D006916 1.0e-51 206.8 142 78.9
MELO3C017987.2 Cucumis melo HOM05D005449 ORTHO05D006916 1.5e-50 203.0 142 77.5
CsaV3_4G000480 Cucumis sativus L. HOM05D005449 ORTHO05D006916 1.5e-50 203.0 142 76.8
CSS0004919 Camellia sinensis var. sinensis HOM05D005449 ORTHO05D006916 1.9e-50 202.6 142 76.1
Hma1.2p1_1986F.1_g310070 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 4.3e-50 201.4 142 77.5
Hma1.2p1_2044F.1_g312372 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 4.3e-50 201.4 142 77.5
TWI14G0435 Tripterygium wilfordii HOM05D005449 ORTHO05D006916 5.6e-50 201.1 138 79.0
TAR636G0282 Trochodendron aralioides HOM05D005449 ORTHO05D006916 7.3e-50 200.7 142 76.1
Dinv33060 Davidia involucrata HOM05D005449 ORTHO05D006916 1.3e-49 199.9 142 75.4
Rhsim06G0059700 Rhododendron simsii HOM05D005449 ORTHO05D006916 1.3e-49 199.9 135 76.3
Nn3g21512 Nelumbo nucifera HOM05D005449 ORTHO05D006916 3.6e-49 198.4 138 76.1
Dinv44016 Davidia involucrata HOM05D005449 ORTHO05D006916 8.1e-49 197.2 139 75.5
FAN22G2041 Fragaria x ananassa HOM05D005449 ORTHO05D006916 2.4e-48 195.7 123 79.7
RcHm_v2.0_Chr4g0408421 Rosa chinensis HOM05D005449 ORTHO05D006916 2.4e-48 195.7 125 79.2
Cpa.g.sc9.253 Carica papaya HOM05D005449 ORTHO05D006916 4.0e-48 194.9 130 78.5
CiPaw.08G094600 Carya illinoinensis HOM05D005449 ORTHO05D006916 4.0e-48 194.9 142 73.2
Eucgr.F02473 Eucalyptus grandis HOM05D005449 ORTHO05D006916 4.0e-48 194.9 142 74.6
FvH4_4g11510 Fragaria vesca HOM05D005449 ORTHO05D006916 4.0e-48 194.9 123 78.9
Sopen08g023260 Solanum pennellii HOM05D005449 ORTHO05D006916 4.0e-48 194.9 141 76.6
Solyc08g074670.3 Solanum lycopersicum HOM05D005449 ORTHO05D006916 6.9e-48 194.1 141 75.9
DCAR_002842 Daucus carota HOM05D005449 ORTHO05D006916 9.0e-48 193.7 141 73.8
Ca_17681_v3 Cicer arietinum L. HOM05D005449 ORTHO05D006916 2.0e-47 192.6 137 75.2
Ca_29605_v3 Cicer arietinum L. HOM05D005449 ORTHO05D006916 2.0e-47 192.6 137 75.2
Glyma.05G185600 Glycine max HOM05D005449 ORTHO05D006916 2.6e-47 192.2 135 75.6
CANSAT25G1565 Cannabis sativa HOM05D005449 ORTHO05D006916 3.4e-47 191.8 142 73.9
Migut.D00146 Erythranthe guttata HOM05D005449 ORTHO05D006916 3.4e-47 191.8 138 74.6
FAN07G2516 Fragaria x ananassa HOM05D005449 ORTHO05D006916 3.4e-47 191.8 123 78.0
Duzib138G1099 Durio zibethinus HOM05D005449 ORTHO05D006916 4.5e-47 191.4 139 74.8
PGSC0003DMG400018921 Solanum tuberosum HOM05D005449 ORTHO05D006916 4.5e-47 191.4 141 75.2
Potri.014G127900 Populus trichocarpa HOM05D005449 ORTHO05D006916 5.8e-47 191.0 140 72.9
CAN.G857.16 Capsicum annuum HOM05D005449 ORTHO05D006916 7.6e-47 190.7 141 74.5
ClCG10G010560 Citrullus lanatus HOM05D005449 ORTHO05D006916 1.3e-46 189.9 154 70.1
Manes.05G061600 Manihot esculenta HOM05D005449 ORTHO05D006916 1.7e-46 189.5 128 75.8
HanXRQChr06g0163691 Helianthus annuus HOM05D005449 ORTHO05D006916 2.9e-46 188.7 129 77.5
MSTRG.21637 Avicennia marina HOM05D005449 ORTHO05D006916 3.8e-46 188.3 142 72.5
CiPaw.07G110200 Carya illinoinensis HOM05D005449 ORTHO05D006916 3.8e-46 188.3 142 73.9
Lj4g0006553 Lotus japonicus HOM05D005449 ORTHO05D006916 3.8e-46 188.3 137 73.7
Phvul.002G266700 Phaseolus vulgaris HOM05D005449 ORTHO05D006916 3.8e-46 188.3 135 75.6
Sabra14G0095000 Salix brachista HOM05D005449 ORTHO05D006916 3.8e-46 188.3 116 82.8
COL.COLO4_23333 Corchorus olitorius HOM05D005449 ORTHO05D006916 4.9e-46 188.0 139 74.1
Lsat_1_v5_gn_8_164201 Lactuca sativa HOM05D005449 ORTHO05D006916 4.9e-46 188.0 140 72.1
TWI59G1340 Tripterygium wilfordii HOM05D005449 ORTHO05D006916 6.4e-46 187.6 142 73.2
PSO675G2222 Papaver somniferum HOM05D005449 ORTHO05D006916 8.4e-46 187.2 138 73.2
Cc01_g20940 Coffea canephora HOM05D005449 ORTHO05D006916 1.1e-45 186.8 141 72.3
PGR119G1363 Punica granatum HOM05D005449 ORTHO05D006916 1.1e-45 186.8 135 74.1
Thecc.01G301700 Theobroma cacao HOM05D005449 ORTHO05D006916 1.1e-45 186.8 139 71.9
Peaxi162Scf00445g00079 Petunia axillaris HOM05D005449 ORTHO05D006916 1.4e-45 186.4 141 73.8
vmacro09952 Vaccinium macrocarpon HOM05D005449 ORTHO05D006916 1.4e-45 186.4 166 63.9
Oeu054120.1 Olea europaea HOM05D005449 ORTHO05D006916 1.9e-45 186.0 140 72.1
SGA_v2.0_scaffold1G00359 Striga asiatica HOM05D005449 ORTHO05D006916 1.9e-45 186.0 141 73.0
Gohir.D12G133700 Gossypium hirsutum HOM05D005449 ORTHO05D006916 2.4e-45 185.7 140 72.1
Gorai.008G144700 Gossypium raimondii HOM05D005449 ORTHO05D006916 2.4e-45 185.7 140 72.1
EL10Ac7g17526 Beta vulgaris HOM05D005449 ORTHO05D006916 3.2e-45 185.3 122 77.9
Nitab4.5_0008438g0020 Nicotiana tabacum HOM05D005449 ORTHO05D006916 3.2e-45 185.3 141 73.0
MBI18_g24865_MAGBIO Magnolia biondii HOM05D005449 ORTHO05D006916 4.2e-45 184.9 137 74.5
Medtr8g092180 Medicago truncatula HOM05D005449 ORTHO05D006916 4.2e-45 184.9 139 71.2
Ah.08g213380 Amaranthus hybridus HOM05D005449 ORTHO05D006916 9.3e-45 183.7 131 74.0
Gohir.A12G129900 Gossypium hirsutum HOM05D005449 ORTHO05D006916 1.2e-44 183.3 140 71.4
Rhsim09G0186400 Rhododendron simsii HOM05D005449 ORTHO05D006916 1.6e-44 183.0 162 63.6
Nitab4.5_0002276g0010 Nicotiana tabacum HOM05D005449 ORTHO05D006916 2.7e-44 182.2 138 73.2
Hund11156 Selenicereus undatus HOM05D005449 ORTHO05D006916 2.7e-44 182.2 125 76.8
GSVIVG01028030001 Vitis vinifera HOM05D005449 ORTHO05D006916 2.7e-44 182.2 111 83.8
Duzib211G0575 Durio zibethinus HOM05D005449 ORTHO05D006916 3.5e-44 181.8 139 71.2
Aqoxy1G00207 Aquilegia oxysepala HOM05D005449 ORTHO05D006916 6.0e-44 181.0 141 68.8
THA.LOC104817488 Tarenaya hassleriana HOM05D005449 ORTHO05D006916 6.0e-44 181.0 118 78.8
Ciclev10022754m.g Citrus clementina HOM05D005449 ORTHO05D006916 7.9e-44 180.6 133 73.7
Oeu024404.1 Olea europaea HOM05D005449 ORTHO05D006916 7.9e-44 180.6 140 70.7
ECA236G0849 Erigeron canadensis HOM05D005449 ORTHO05D006916 1.0e-43 180.3 136 72.1
Actinidia21206 Actinidia chinensis HOM05D005449 ORTHO05D006916 1.3e-43 179.9 135 71.1
Peaxi162Scf00045g01343 Petunia axillaris HOM05D005449 ORTHO05D006916 2.3e-43 179.1 141 70.2
CDE05G2918 Ceratophyllum demersum HOM05D005449 ORTHO05D006916 3.0e-43 178.7 134 71.6
Glyma.08G143600 Glycine max HOM05D005449 ORTHO05D006916 3.0e-43 178.7 135 71.9
Lalb_Chr03g0036381 Lupinus albus HOM05D005449 ORTHO05D006916 6.7e-43 177.6 118 78.0
Solyc08g005920.3 Solanum lycopersicum HOM05D005449 ORTHO05D006916 1.9e-42 176.0 134 70.9
TPR.G2165 Trifolium pratense HOM05D005449 ORTHO05D006916 1.9e-42 176.0 139 69.8
arahy.Tifrunner.gnm1.ann1.X8E93Z Arachis hypogaea HOM05D005449 ORTHO05D006916 5.6e-42 174.5 140 67.9
arahy.Tifrunner.gnm1.ann1.YB8ZH2 Arachis hypogaea HOM05D005449 ORTHO05D006916 5.6e-42 174.5 140 67.9
PGSC0003DMG400004469 Solanum tuberosum HOM05D005449 ORTHO05D006916 5.6e-42 174.5 141 71.6
Sopen08g001890 Solanum pennellii HOM05D005449 ORTHO05D006916 1.3e-41 173.3 141 70.2
ATR0582G023 Amborella trichopoda HOM05D005449 ORTHO05D006916 2.8e-41 172.2 134 67.2
Psat7g049640 Pisum sativum HOM05D005449 ORTHO05D006916 3.7e-41 171.8 119 74.8
unitig_26.g10174 Utricularia gibba HOM05D005449 ORTHO05D006916 4.8e-41 171.4 129 70.5
RcHm_v2.0_Chr6g0264541 Rosa chinensis HOM05D005449 ORTHO05D006916 6.2e-41 171.0 99 89.9
Os05g0154900 Oryza sativa ssp. japonica HOM05D005449 ORTHO05D006916 8.1e-41 170.6 130 69.2
VMungo0251G2862 Vigna mungo HOM05D000587 ORTHO05D000929 4.0e-40 168.3 135 69.6
Nitab4.5_0000860g0030 Nicotiana tabacum HOM05D005449 ORTHO05D006916 1.5e-39 166.4 141 68.1
Sc04g0009560 Simmondsia chinensis HOM05D005449 ORTHO05D006916 2.6e-39 165.6 145 63.4
AL5G33630 Arabidopsis lyrata HOM05D005449 ORTHO05D006916 9.9e-39 163.7 119 73.1
Zm00001eb346090 Zea mays HOM05D005449 ORTHO05D006916 9.3e-37 157.1 118 71.2
AUR62008679 Chenopodium quinoa HOM05D005449 ORTHO05D006916 3.5e-36 155.2 131 67.2
Lsat_1_v5_gn_7_53001 Lactuca sativa HOM05D005449 ORTHO05D006916 2.1e-33 146.0 143 62.9
HPP92_010681 Vanilla planifolia HOM05D005449 ORTHO05D006916 2.8e-33 145.6 127 63.0
AUR62025565 Chenopodium quinoa HOM05D005449 ORTHO05D006916 4.5e-31 138.3 131 61.1
FvH4_7g29690 Fragaria vesca HOM05D005449 ORTHO05D006916 1.0e-30 137.1 78 89.7
Atru.chr5.1135 Acer truncatum HOM05D005449 ORTHO05D006916 1.3e-30 136.7 90 80.0
MD10G1102600 Malus domestica HOM05D005449 ORTHO05D006916 2.2e-30 136.0 85 80.0
BcaB01g00336 Brassica carinata HOM05D005449 ORTHO05D006916 2.9e-30 135.6 119 64.7
Carub.0005s1933 Capsella rubella HOM05D005449 ORTHO05D006916 3.8e-30 135.2 119 63.9
Pp3c14_5880 Physcomitrium patens HOM05D005449 ORTHO05D006916 3.8e-30 135.2 117 59.8
A09p45940 Brassica napus HOM05D005449 ORTHO05D006916 4.9e-30 134.8 119 64.7
BolC8t50425H Brassica oleracea HOM05D005449 ORTHO05D006916 4.9e-30 134.8 119 64.7
SMO367G0046 Selaginella moellendorffii HOM05D005449 ORTHO05D006916 6.5e-30 134.4 121 57.9
C08p28130 Brassica napus HOM05D005449 ORTHO05D006916 8.4e-30 134.0 119 63.9
BraA09t40054Z Brassica rapa HOM05D005449 ORTHO05D006916 8.4e-30 134.0 119 63.9
Sp5g09480 Schrenkiella parvula HOM05D005449 ORTHO05D006916 1.1e-29 133.7 84 83.3
AT3G52860 Arabidopsis thaliana HOM05D005449 ORTHO05D006916 1.9e-29 132.9 87 79.3
Thhalv10010784m.g Eutrema salsugineum HOM05D005449 ORTHO05D006916 2.5e-29 132.5 119 64.7
CARHR162730 Cardamine hirsuta HOM05D005449 ORTHO05D006916 3.2e-29 132.1 136 59.6
SEGI_14448 Sequoiadendron giganteum HOM05D005449 ORTHO05D006916 7.1e-29 131.0 131 57.3
Haze_04950 Corylus avellana HOM05D005449 ORTHO05D006916 1.2e-28 130.2 83 80.7
Ciclev10033890m.g Citrus clementina HOM05D005449 ORTHO05D006916 4.6e-28 128.3 173 48.6
HanXRQChr06g0163731 Helianthus annuus HOM05D005449 ORTHO05D006916 3.0e-27 125.6 86 79.1
HanXRQChr10g0316901 Helianthus annuus HOM05D005449 ORTHO05D006916 9.7e-26 120.6 95 70.5
Atru.chr11.2437 Acer truncatum HOM05D005449 ORTHO05D006916 8.2e-25 117.5 163 47.9
PSO675G2923 Papaver somniferum HOM05D005449 ORTHO05D006916 1.4e-24 116.7 88 68.2
AagrBONN_evm.TU.Sc2ySwM_117.989 Anthoceros agrestis HOM05D005449 ORTHO05D006916 2.6e-23 112.5 128 51.6
Actinidia07783 Actinidia chinensis HOM05D005449 ORTHO05D006916 4.2e-21 105.1 73 75.3
Mapoly0162s0020 Marchantia polymorpha HOM05D005449 ORTHO05D006916 2.7e-20 102.4 132 43.9
Zm00001eb085090 Zea mays HOM05D005449 ORTHO05D006916 1.0e-14 84.0 111 47.7
Zm00001eb340530 Zea mays HOM05D005449 ORTHO05D006916 1.1e-13 80.5 91 53.8
FAN17G0623 Fragaria x ananassa HOM05D005449 ORTHO05D006916 2.7e-12 75.9 40 90.0
Manes.01G220201 Manihot esculenta HOM05D005449 ORTHO05D006916 3.6e-12 75.5 84 51.2
BcaC07g39651 Brassica carinata HOM05D001272 ORTHO05D001843 3.0e-11 72.4 85 52.9
Hma1.2p1_0276F.1_g111190 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 1.1e-10 70.5 65 55.4
Hma1.2p1_0494F.1_g165230 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 9.1e-08 60.8 33 81.8


User provided reference genes

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