Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g03900 Fragaria vesca HOM05D006481 ORTHO05D008160 0.0e+00 1273.8 815 100.0
FAN27G2785 Fragaria x ananassa HOM05D006481 ORTHO05D008160 0.0e+00 1238.4 813 97.7
FAN15G2146 Fragaria x ananassa HOM05D006481 ORTHO05D008160 0.0e+00 1199.9 813 95.6
RcHm_v2.0_Chr6g0252931 Rosa chinensis HOM05D006481 ORTHO05D008160 0.0e+00 1083.6 819 86.3
Prupe.8G140600 Prunus persica HOM05D006481 ORTHO05D008160 2.1e-240 836.3 843 69.2
MD05G1096200 Malus domestica HOM05D006481 ORTHO05D008160 1.0e-207 727.6 893 62.7
FAN20G1292 Fragaria x ananassa HOM05D006481 ORTHO05D008160 1.2e-203 714.1 525 97.3
QL11p031947 Quercus lobata HOM05D006481 ORTHO05D008160 2.6e-198 696.4 853 65.8
Cfa004657 Carpinus fangiana HOM05D006481 ORTHO05D008160 6.5e-186 655.2 919 52.2
Haze_10252 Corylus avellana HOM05D006481 ORTHO05D008160 6.5e-186 655.2 914 50.9
Manes.10G058310 Manihot esculenta HOM05D006481 ORTHO05D008160 7.5e-174 615.1 832 56.0
CiPaw.05G015400 Carya illinoinensis HOM05D006481 ORTHO05D008160 6.3e-173 612.1 874 49.9
Dinv42219 Davidia involucrata HOM05D006481 ORTHO05D008160 5.5e-169 599.0 870 52.3
Dinv15788 Davidia involucrata HOM05D006481 ORTHO05D008160 9.5e-169 598.2 851 54.1
TWI14G1262 Tripterygium wilfordii HOM05D006481 ORTHO05D008160 1.8e-164 583.9 864 52.1
Cpa.g.sc106.79 Carica papaya HOM05D006481 ORTHO05D008160 3.2e-164 583.2 1003 47.6
Thecc.02G113600 Theobroma cacao HOM05D006481 ORTHO05D008160 3.2e-164 583.2 849 54.5
Gohir.D12G020600 Gossypium hirsutum HOM05D006481 ORTHO05D008160 7.5e-158 562.0 858 49.8
Duzib132G1015 Durio zibethinus HOM05D006481 ORTHO05D008160 8.3e-157 558.5 847 52.7
Potri.009G090900 Populus trichocarpa HOM05D006481 ORTHO05D008160 1.4e-156 557.8 844 53.3
COL.COLO4_32543 Corchorus olitorius HOM05D006481 ORTHO05D008160 4.1e-156 556.2 823 51.2
TAR376G0872 Trochodendron aralioides HOM05D006481 ORTHO05D008160 1.7e-149 534.3 859 47.7
Gorai.008G021000 Gossypium raimondii HOM05D006481 ORTHO05D008160 1.5e-145 521.2 903 47.2
Potri.001G296700 Populus trichocarpa HOM05D006481 ORTHO05D008160 5.2e-143 512.7 840 49.3
CSS0020952 Camellia sinensis var. sinensis HOM05D006481 ORTHO05D008160 8.9e-143 511.9 828 49.0
CSS0029586 Camellia sinensis var. sinensis HOM05D006481 ORTHO05D008160 1.2e-142 511.5 826 50.1
Actinidia34372 Actinidia chinensis HOM05D006481 ORTHO05D008160 3.4e-142 510.0 848 46.6
Gohir.A12G020400 Gossypium hirsutum HOM05D006481 ORTHO05D008160 3.4e-142 510.0 855 49.1
Lj5g0022753 Lotus japonicus HOM05D006481 ORTHO05D008160 4.1e-140 503.1 803 50.2
Medtr1g106795 Medicago truncatula HOM05D006481 ORTHO05D008160 3.6e-136 490.0 817 50.3
Nitab4.5_0004685g0050 Nicotiana tabacum HOM05D006481 ORTHO05D008160 2.9e-133 480.3 847 49.5
Nitab4.5_0001105g0200 Nicotiana tabacum HOM05D006481 ORTHO05D008160 8.4e-133 478.8 825 46.5
Lalb_Chr02g0145111 Lupinus albus HOM05D006481 ORTHO05D008160 4.6e-131 473.0 881 41.5
Ca_11047_v3 Cicer arietinum L. HOM05D006481 ORTHO05D008160 1.0e-130 471.9 821 48.4
TPR.G27130 Trifolium pratense HOM05D006481 ORTHO05D008160 2.5e-129 467.2 822 51.1
Sopen01g049510 Solanum pennellii HOM05D006481 ORTHO05D008160 4.3e-129 466.5 886 48.0
arahy.Tifrunner.gnm1.ann1.RQ9967 Arachis hypogaea HOM05D006481 ORTHO05D008160 1.3e-128 464.9 798 47.7
Solyc01g107260.4 Solanum lycopersicum HOM05D006481 ORTHO05D008160 6.2e-128 462.6 895 48.6
Sabra09G0070200 Salix brachista HOM05D006481 ORTHO05D008160 8.1e-128 462.2 824 49.2
arahy.Tifrunner.gnm1.ann1.IH69Y8 Arachis hypogaea HOM05D006481 ORTHO05D008160 3.1e-127 460.3 792 47.7
Sed0008985 Sechium edule HOM05D006481 ORTHO05D008160 4.9e-125 453.0 848 42.8
MELO3C017986.2 Cucumis melo HOM05D006481 ORTHO05D008160 2.4e-124 450.7 833 45.0
DCAR_021965 Daucus carota HOM05D006481 ORTHO05D008160 3.2e-124 450.3 934 40.1
Lj5A217G88 Lonicera japonica HOM05D006481 ORTHO05D008160 6.0e-123 446.0 832 47.6
Glyma.20G132200 Glycine max HOM05D006481 ORTHO05D008160 1.0e-122 445.3 880 48.9
Atru.BG.62.p Acer truncatum HOM05D006481 ORTHO05D008160 1.5e-121 441.4 447 59.5
Sabra16G0185800 Salix brachista HOM05D006481 ORTHO05D008160 7.3e-121 439.1 833 48.4
Phvul.007G043300 Phaseolus vulgaris HOM05D006481 ORTHO05D008160 2.8e-120 437.2 882 44.1
Ciclev10027845m.g Citrus clementina HOM05D006481 ORTHO05D008160 1.2e-118 431.8 819 40.7
PSO675G3182 Papaver somniferum HOM05D006481 ORTHO05D008160 1.2e-118 431.8 857 47.5
GSVIVG01037865001 Vitis vinifera HOM05D006481 ORTHO05D008160 1.5e-118 431.4 454 57.7
CsaV3_4G000490 Cucumis sativus L. HOM05D006481 ORTHO05D008160 3.4e-118 430.3 838 44.6
CAN.G606.42 Capsicum annuum HOM05D006481 ORTHO05D008160 7.1e-116 422.5 973 39.7
PSO541G1903 Papaver somniferum HOM05D006481 ORTHO05D008160 7.1e-116 422.5 857 47.3
MSTRG.16692 Avicennia marina HOM05D006481 ORTHO05D008160 3.3e-113 413.7 858 44.8
VMungo0720G0067 Vigna mungo HOM05D006481 ORTHO05D008160 4.3e-113 413.3 813 45.6
Oeu021369.1 Olea europaea HOM05D006481 ORTHO05D008160 1.6e-112 411.4 824 41.1
THA.LOC104825834 Tarenaya hassleriana HOM05D006481 ORTHO05D008160 6.9e-111 406.0 854 46.1
Psat6g216240 Pisum sativum HOM05D006481 ORTHO05D008160 1.2e-110 405.2 434 59.4
Cc02_g30880 Coffea canephora HOM05D006481 ORTHO05D008160 2.6e-110 404.1 913 43.8
Ah.14g085520 Amaranthus hybridus HOM05D006481 ORTHO05D008160 7.6e-110 402.5 866 41.9
ClCG10G010570 Citrullus lanatus HOM05D006481 ORTHO05D008160 7.6e-110 402.5 711 41.5
Aa31LG10G4220 Aethionema arabicum HOM05D006481 ORTHO05D008160 1.3e-109 401.7 810 45.9
Thhalv10011233m.g Eutrema salsugineum HOM05D006481 ORTHO05D008160 2.2e-109 401.0 848 41.5
Aqoxy6G02732 Aquilegia oxysepala HOM05D006481 ORTHO05D008160 1.4e-108 398.3 870 43.1
Sp1g36750 Schrenkiella parvula HOM05D006481 ORTHO05D008160 1.9e-108 397.9 828 44.1
BolC8t47171H Brassica oleracea HOM05D006481 ORTHO05D008160 2.3e-106 391.0 809 42.6
A08p03520 Brassica napus HOM05D006481 ORTHO05D008160 6.7e-106 389.4 811 42.8
AUR62031332 Chenopodium quinoa HOM05D006481 ORTHO05D008160 6.7e-106 389.4 765 41.6
vmacro01976 Vaccinium macrocarpon HOM05D006481 ORTHO05D008160 1.5e-105 388.3 785 42.0
AT1G49870 Arabidopsis thaliana HOM05D006481 ORTHO05D008160 2.1e-104 384.4 810 44.8
AUR62027350 Chenopodium quinoa HOM05D006481 ORTHO05D008160 4.8e-104 383.3 770 41.3
SalBow6G0734 Salvia bowleyana HOM05D006481 ORTHO05D008160 8.2e-104 382.5 815 43.6
AL1G57410 Arabidopsis lyrata HOM05D006481 ORTHO05D008160 6.9e-103 379.4 817 44.3
Eucgr.I01079 Eucalyptus grandis HOM05D006481 ORTHO05D008160 9.0e-103 379.0 732 47.8
Migut.B00421 Erythranthe guttata HOM05D006481 ORTHO05D008160 2.0e-102 377.9 811 37.7
Carub.0001s3908 Capsella rubella HOM05D006481 ORTHO05D008160 2.6e-102 377.5 831 42.1
BraA08t32385Z Brassica rapa HOM05D006481 ORTHO05D008160 2.2e-101 374.4 811 44.6
ECA234G0568 Erigeron canadensis HOM05D006481 ORTHO05D008160 3.2e-100 370.5 451 51.7
C08p03680 Brassica napus HOM05D006481 ORTHO05D008160 1.2e-99 368.6 811 41.4
Peaxi162Scf00016g02732 Petunia axillaris HOM05D006481 ORTHO05D008160 1.2e-99 368.6 778 48.8
BcaB04g17289 Brassica carinata HOM05D006481 ORTHO05D008160 4.6e-99 366.7 797 43.3
EL10Ac8g19363 Beta vulgaris HOM05D006481 ORTHO05D008160 1.0e-98 365.5 821 38.6
unitig_744.g24217 Utricularia gibba HOM05D006481 ORTHO05D008160 6.7e-98 362.8 502 47.8
PGSC0003DMG400025848 Solanum tuberosum HOM05D006481 ORTHO05D008160 5.7e-97 359.8 870 43.9
TAR628G0609 Trochodendron aralioides HOM05D006481 ORTHO05D008160 2.2e-93 347.8 490 48.6
RhsimUnG0125900 Rhododendron simsii HOM05D006481 ORTHO05D008160 1.6e-91 341.7 915 35.4
CARHR039920 Cardamine hirsuta HOM05D006481 ORTHO05D008160 1.0e-90 339.0 827 42.3
Rhsim11G0154700 Rhododendron simsii HOM05D006481 ORTHO05D008160 1.1e-89 335.5 901 35.3
Lsat_1_v5_gn_5_114361 Lactuca sativa HOM05D006481 ORTHO05D008160 5.3e-87 326.6 459 47.7
HanXRQChr16g0514441 Helianthus annuus HOM05D006481 ORTHO05D008160 6.5e-85 319.7 398 50.3
ATR0030G005 Amborella trichopoda HOM05D006481 ORTHO05D008160 1.1e-84 318.9 474 48.5
Os03g0604600 Oryza sativa ssp. japonica HOM05D006481 ORTHO05D008160 1.4e-84 318.5 464 46.6
SGA_v2.0_scaffold225G43011 Striga asiatica HOM05D006481 ORTHO05D008160 8.8e-82 309.3 828 38.9
Zm00001eb050130 Zea mays HOM05D006481 ORTHO05D008160 1.6e-78 298.5 436 47.5
HPP92_017760 Vanilla planifolia HOM05D006481 ORTHO05D008160 2.1e-75 288.1 440 45.7
SEGI_11188 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 2.0e-49 201.8 631 32.0
SEGI_37018 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 2.0e-49 201.8 631 32.0
MD10G1102400 Malus domestica HOM05D006481 ORTHO05D008160 1.3e-45 189.1 149 71.1
MD10G1102500 Malus domestica HOM05D006481 ORTHO05D008160 3.9e-45 187.6 169 65.7
Sc14g0002570 Simmondsia chinensis HOM05D006481 ORTHO05D008160 6.6e-45 186.8 658 36.3
CDE04G1272 Ceratophyllum demersum HOM05D006481 ORTHO05D008160 1.0e-42 179.5 342 41.5
RcHm_v2.0_Chr4g0423461 Rosa chinensis HOM05D006481 ORTHO05D000001 1.5e-41 175.6 117 77.8
RcHm_v2.0_Chr4g0421911 Rosa chinensis HOM05D006481 ORTHO05D008160 5.4e-39 167.2 280 49.6
SEGI_25924 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 4.4e-33 147.5 907 26.0
Pp3c18_18840 Physcomitrium patens HOM05D006481 ORTHO05D008160 6.4e-32 143.7 368 36.1
SMO196G0099 Selaginella moellendorffii HOM05D006481 ORTHO05D008160 2.7e-30 138.3 418 33.3
SHI05066 Sapria himalayana HOM05D006481 ORTHO05D008160 6.6e-29 133.7 132 60.6
Hma1.2p1_1361F.1_g278150 Hydrangea macrophylla HOM05D006481 ORTHO05D008160 1.2e-27 129.4 160 50.6
RcHm_v2.0_Chr6g0252961 Rosa chinensis HOM05D006481 ORTHO05D008160 3.6e-27 127.9 68 95.6
EL10Ac6g13964 Beta vulgaris HOM05D006481 ORTHO05D008160 4.1e-23 114.4 243 39.5
Hma1.2p1_0000F.1_g001000 Hydrangea macrophylla HOM05D006481 ORTHO05D008160 1.9e-20 105.5 419 31.7
CBR_g49330 Chara braunii HOM05D006481 ORTHO05D008160 4.3e-20 104.4 213 36.6
Duzib052G0964 Durio zibethinus HOM05D006481 ORTHO05D008160 4.0e-18 97.8 144 48.6
Atru.chr5.2411 Acer truncatum HOM05D006481 ORTHO05D008160 8.9e-18 96.7 64 73.4
TAR628G0206 Trochodendron aralioides HOM05D006481 ORTHO05D008160 1.9e-12 79.0 271 42.8
SHI05065 Sapria himalayana HOM05D006481 ORTHO05D008160 2.0e-09 68.9 106 41.5
SGA_v2.0_scaffold4001G54416 Striga asiatica HOM05D006481 ORTHO05D008160 9.9e-09 66.6 61 54.1
BcaC05g27423 Brassica carinata HOM05D006481 ORTHO05D008160 5.4e-07 60.8 43 67.4
Oeu039499.1 Olea europaea HOM05D006481 ORTHO05D008160 3.5e-06 58.2 35 77.1


User provided reference genes

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