Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g03770 Fragaria vesca HOM05D006229 ORTHO05D007190 0.0e+00 1222.2 645 100.0
FAN24G1336 Fragaria x ananassa HOM05D006229 ORTHO05D007190 0.0e+00 1195.3 704 91.6
FAN15G0250 Fragaria x ananassa HOM05D006229 ORTHO05D007190 0.0e+00 1126.7 786 80.3
RcHm_v2.0_Chr6g0252731 Rosa chinensis HOM05D006229 ORTHO05D007190 4.4e-312 1074.7 677 85.4
Prupe.8G146100 Prunus persica HOM05D006229 ORTHO05D007190 1.7e-269 932.6 654 76.8
MD10G1106700 Malus domestica HOM05D006229 ORTHO05D007190 2.4e-247 859.0 635 73.2
MD05G1101600 Malus domestica HOM05D006229 ORTHO05D007190 6.8e-247 857.4 634 73.5
Cfa004667 Carpinus fangiana HOM05D006229 ORTHO05D007190 8.7e-226 787.3 656 65.5
GSVIVG01037817001 Vitis vinifera HOM05D006229 ORTHO05D007190 4.5e-222 775.0 659 64.5
FAN20G1794 Fragaria x ananassa HOM05D006229 ORTHO05D007190 3.3e-217 758.8 414 97.6
Haze_10264 Corylus avellana HOM05D006229 ORTHO05D007190 4.8e-216 755.0 656 63.4
Dinv15812 Davidia involucrata HOM05D006229 ORTHO05D007190 1.4e-215 753.4 660 63.5
Atru.chr5.2332 Acer truncatum HOM05D006229 ORTHO05D007190 9.0e-215 750.7 651 63.4
Thecc.02G118000 Theobroma cacao HOM05D006229 ORTHO05D007190 4.6e-211 738.4 649 63.9
Potri.001G292800 Populus trichocarpa HOM05D006229 ORTHO05D007190 7.9e-211 737.6 654 62.7
Ciclev10027970m.g Citrus clementina HOM05D006229 ORTHO05D007190 3.4e-206 722.2 661 62.0
CSS0031624 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 5.9e-206 721.5 658 61.6
CSS0000082 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 1.0e-205 720.7 658 61.6
CANSAT25G2732 Cannabis sativa HOM05D006229 ORTHO05D007190 1.3e-205 720.3 654 61.5
CANSAT25G3217 Cannabis sativa HOM05D006229 ORTHO05D007190 2.2e-205 719.5 654 61.5
TWI59G1401 Tripterygium wilfordii HOM05D006229 ORTHO05D007190 3.0e-202 709.1 657 60.6
TAR381G1278 Trochodendron aralioides HOM05D006229 ORTHO05D007190 8.8e-202 707.6 657 60.3
TAR381G0595 Trochodendron aralioides HOM05D006229 ORTHO05D007190 1.3e-200 703.7 657 60.0
Potri.009G087100 Populus trichocarpa HOM05D006229 ORTHO05D007190 1.7e-200 703.4 656 60.4
Gorai.012G147300 Gossypium raimondii HOM05D006229 ORTHO05D007190 7.7e-198 694.5 661 60.2
Gohir.D04G159900 Gossypium hirsutum HOM05D006229 ORTHO05D007190 1.0e-197 694.1 661 59.9
arahy.Tifrunner.gnm1.ann1.U3HZ1H Arachis hypogaea HOM05D006229 ORTHO05D007190 2.9e-197 692.6 652 59.4
Sabra09G0066700 Salix brachista HOM05D006229 ORTHO05D007190 1.4e-196 690.3 683 58.0
Actinidia00366 Actinidia chinensis HOM05D006229 ORTHO05D007190 1.9e-196 689.9 659 59.5
Glyma.01G242300 Glycine max HOM05D006229 ORTHO05D007190 1.9e-196 689.9 647 60.0
COL.COLO4_32503 Corchorus olitorius HOM05D006229 ORTHO05D007190 5.2e-194 681.8 611 62.2
Nn1g04542 Nelumbo nucifera HOM05D006229 ORTHO05D007190 1.5e-193 680.2 653 56.7
arahy.Tifrunner.gnm1.ann1.WVEK9H Arachis hypogaea HOM05D006229 ORTHO05D007190 1.3e-192 677.2 637 60.0
Oeu013795.1 Olea europaea HOM05D006229 ORTHO05D007190 1.1e-191 674.1 663 58.2
vmacro01958 Vaccinium macrocarpon HOM05D006229 ORTHO05D007190 3.5e-190 669.1 662 58.8
TPR.G8306 Trifolium pratense HOM05D006229 ORTHO05D007190 1.7e-189 666.8 652 58.1
Lalb_Chr09g0319621 Lupinus albus HOM05D006229 ORTHO05D007190 8.5e-189 664.5 651 58.2
VMungo1215G0068 Vigna mungo HOM05D006229 ORTHO05D007190 5.5e-188 661.8 651 57.5
Phvul.002G051500 Phaseolus vulgaris HOM05D006229 ORTHO05D007190 3.6e-187 659.1 647 58.4
Rhsim11G0152600 Rhododendron simsii HOM05D006229 ORTHO05D007190 2.0e-185 653.3 679 56.6
Ca_24360_v3 Cicer arietinum L. HOM05D006229 ORTHO05D007190 9.7e-185 651.0 650 57.1
Hma1.2p1_0661F.1_g198200 Hydrangea macrophylla HOM05D006229 ORTHO05D007190 9.1e-183 644.4 641 58.0
CsaV3_7G007770 Cucumis sativus L. HOM05D006229 ORTHO05D007190 1.0e-181 641.0 657 57.4
Sed0001379 Sechium edule HOM05D006229 ORTHO05D007190 1.0e-181 641.0 655 57.6
MELO3C018525.2 Cucumis melo HOM05D006229 ORTHO05D007190 2.5e-180 636.3 657 56.9
Lj5C219G10 Lonicera japonica HOM05D006229 ORTHO05D007190 4.2e-180 635.6 651 56.2
Aqoxy6G02594 Aquilegia oxysepala HOM05D006229 ORTHO05D007190 1.0e-178 630.9 648 54.5
Duzib132G1226 Durio zibethinus HOM05D006229 ORTHO05D007190 8.8e-178 627.9 659 57.1
Medtr5g005010 Medicago truncatula HOM05D006229 ORTHO05D007190 1.7e-176 623.6 652 55.4
THA.LOC104807215 Tarenaya hassleriana HOM05D006229 ORTHO05D007190 7.0e-175 618.2 643 54.6
PGR142G3871 Punica granatum HOM05D006229 ORTHO05D007190 1.2e-174 617.5 616 56.8
CiPaw.05G018500 Carya illinoinensis HOM05D006229 ORTHO05D007190 1.0e-173 614.4 523 63.5
RhsimUnG0124300 Rhododendron simsii HOM05D006229 ORTHO05D007190 1.5e-172 610.5 687 54.0
AT2G14680 Arabidopsis thaliana HOM05D006229 ORTHO05D007190 6.1e-171 605.1 640 54.4
Solyc01g106950.3 Solanum lycopersicum HOM05D006229 ORTHO05D007190 8.8e-170 601.3 645 53.3
Sopen01g049230 Solanum pennellii HOM05D006229 ORTHO05D007190 1.2e-169 600.9 645 53.3
Cc02_g19910 Coffea canephora HOM05D006229 ORTHO05D007190 1.5e-169 600.5 663 53.5
ClCG02G007070 Citrullus lanatus HOM05D006229 ORTHO05D007190 1.7e-168 597.0 767 48.8
Actinidia27991 Actinidia chinensis HOM05D006229 ORTHO05D007190 8.3e-168 594.7 607 58.0
AL3G46380 Arabidopsis lyrata HOM05D006229 ORTHO05D007190 1.1e-167 594.3 640 54.1
Thhalv10022593m.g Eutrema salsugineum HOM05D006229 ORTHO05D007190 3.1e-167 592.8 641 53.5
Peaxi162Scf00016g02933 Petunia axillaris HOM05D006229 ORTHO05D007190 4.1e-167 592.4 652 53.2
PSO541G3151 Papaver somniferum HOM05D006229 ORTHO05D007190 5.9e-166 588.6 647 52.2
Carub.0003s2870 Capsella rubella HOM05D006229 ORTHO05D007190 3.3e-164 582.8 640 53.1
Sp3g27780 Schrenkiella parvula HOM05D006229 ORTHO05D007190 7.3e-164 581.6 641 52.1
A07p05730 Brassica napus HOM05D006229 ORTHO05D007190 4.0e-162 575.9 669 50.7
BcaC06g36004 Brassica carinata HOM05D006229 ORTHO05D007190 3.4e-161 572.8 669 50.4
ECA240G1909 Erigeron canadensis HOM05D006229 ORTHO05D007190 4.4e-161 572.4 677 48.0
BraA07t28374Z Brassica rapa HOM05D006229 ORTHO05D007190 1.4e-159 567.4 693 49.4
Nitab4.5_0011076g0030 Nicotiana tabacum HOM05D006229 ORTHO05D007190 7.0e-159 565.1 671 51.3
BcaB03g16253 Brassica carinata HOM05D006229 ORTHO05D007190 4.6e-158 562.4 668 49.7
Nitab4.5_0002040g0030 Nicotiana tabacum HOM05D006229 ORTHO05D007190 1.0e-157 561.2 631 53.6
C07p09110 Brassica napus HOM05D006229 ORTHO05D007190 6.6e-157 558.5 669 49.6
Aa31LG8G12780 Aethionema arabicum HOM05D006229 ORTHO05D007190 1.1e-156 557.8 645 50.7
Eucgr.I01054 Eucalyptus grandis HOM05D006229 ORTHO05D007190 3.3e-156 556.2 508 59.8
DCAR_003607 Daucus carota HOM05D006229 ORTHO05D007190 4.3e-156 555.8 668 52.1
BolC7t41322H Brassica oleracea HOM05D006229 ORTHO05D007190 6.8e-154 548.5 693 48.1
ATR0739G065 Amborella trichopoda HOM05D006229 ORTHO05D007190 3.7e-152 542.7 653 48.9
PSO675G2905 Papaver somniferum HOM05D006229 ORTHO05D007190 4.1e-151 539.3 649 49.5
SGA_v2.0_scaffold32G12994 Striga asiatica HOM05D006229 ORTHO05D007190 2.1e-147 526.9 648 50.9
Sabra16G0182400 Salix brachista HOM05D006229 ORTHO05D007190 3.6e-147 526.2 450 63.3
Lj1g0023148 Lotus japonicus HOM05D006229 ORTHO05D007190 6.6e-141 505.4 448 62.1
Lsat_1_v5_gn_9_112861 Lactuca sativa HOM05D006229 ORTHO05D007190 3.6e-139 499.6 592 50.0
HanXRQChr03g0073151 Helianthus annuus HOM05D006229 ORTHO05D007190 1.1e-138 498.0 630 47.6
CDE01G0760 Ceratophyllum demersum HOM05D006229 ORTHO05D007190 9.9e-137 491.5 657 46.6
Hma1.2p1_0661F.1_g198190 Hydrangea macrophylla HOM05D006229 ORTHO05D007190 1.1e-135 488.0 422 63.7
Psat4g227440 Pisum sativum HOM05D006229 ORTHO05D007190 9.2e-135 485.0 482 57.7
Sc18g0007440 Simmondsia chinensis HOM05D006229 ORTHO05D007190 6.0e-134 482.3 667 45.7
Hund06515 Selenicereus undatus HOM05D006229 ORTHO05D007190 5.3e-122 442.6 706 41.4
EL10Ac9g22197 Beta vulgaris HOM05D006229 ORTHO05D007190 2.6e-121 440.3 663 43.1
unitig_46.g18839 Utricularia gibba HOM05D006229 ORTHO05D007190 1.3e-120 438.0 650 44.5
HPP92_024894 Vanilla planifolia HOM05D006229 ORTHO05D007190 6.4e-120 435.6 652 43.4
AUR62030848 Chenopodium quinoa HOM05D006229 ORTHO05D007190 7.4e-116 422.2 676 41.0
Cpa.g.sc106.40 Carica papaya HOM05D006229 ORTHO05D007190 9.6e-116 421.8 482 52.5
MSTRG.16677 Avicennia marina HOM05D006229 ORTHO05D007190 2.8e-115 420.2 520 50.4
Os03g0431800 Oryza sativa ssp. japonica HOM05D006229 ORTHO05D007190 9.0e-114 415.2 650 42.6
Migut.B00486 Erythranthe guttata HOM05D006229 ORTHO05D007190 4.5e-113 412.9 495 50.7
Gohir.A04G118200 Gossypium hirsutum HOM05D006229 ORTHO05D007190 2.9e-112 410.2 442 55.7
AUR62027009 Chenopodium quinoa HOM05D006229 ORTHO05D007190 3.5e-110 403.3 667 40.9
Ah.01g024640 Amaranthus hybridus HOM05D006229 ORTHO05D007190 6.0e-102 375.9 651 39.3
CARHR286390 Cardamine hirsuta HOM05D006229 ORTHO05D007190 6.7e-101 372.5 493 46.7
Hund00426 Selenicereus undatus HOM05D006229 ORTHO05D007190 1.4e-79 301.6 847 32.8
Zm00001eb404720 Zea mays HOM05D006229 ORTHO05D007190 9.4e-79 298.9 503 39.4
Gohir.A04G118150 Gossypium hirsutum HOM05D006229 ORTHO05D007190 1.1e-74 285.4 216 69.4
Actinidia34359 Actinidia chinensis HOM05D006229 ORTHO05D007190 1.4e-66 258.5 301 52.2
Duzib248G0077 Durio zibethinus HOM05D006229 ORTHO05D007190 5.0e-64 250.0 261 57.9
Manes.07G057925 Manihot esculenta HOM05D006229 ORTHO05D007190 1.2e-62 245.4 165 77.6
SalBow6G3929 Salvia bowleyana HOM05D006229 ORTHO05D007190 2.8e-59 234.2 332 47.3
HPP92_024895 Vanilla planifolia HOM05D006229 ORTHO05D007190 7.0e-58 229.6 216 59.3
Pp3c7_18650 Physcomitrium patens HOM05D006229 ORTHO05D007190 2.7e-57 227.6 815 28.3
Sc18g0007400 Simmondsia chinensis HOM05D006229 ORTHO05D007190 6.1e-54 216.5 150 76.0
Mapoly0031s0064 Marchantia polymorpha HOM05D006229 ORTHO05D007190 2.6e-52 211.1 739 27.2
PGSC0003DMG402025742 Solanum tuberosum HOM05D006229 ORTHO05D007190 1.8e-50 204.9 154 68.8
Aqoxy255s002 Aquilegia oxysepala HOM05D006229 ORTHO05D007190 2.3e-40 171.4 214 46.7
PGSC0003DMG403025742 Solanum tuberosum HOM05D006229 ORTHO05D007190 1.5e-36 158.7 194 49.5
arahy.Tifrunner.gnm1.ann1.DEY174 Arachis hypogaea HOM05D006229 ORTHO05D007190 7.8e-33 146.4 310 36.1
SEGI_17957 Sequoiadendron giganteum HOM05D006229 ORTHO05D007190 2.3e-29 134.8 204 40.7
Zm00001eb065540 Zea mays HOM05D006229 ORTHO05D007190 7.5e-28 129.8 101 66.3
Oeu042676.1 Olea europaea HOM05D006229 ORTHO05D007190 6.6e-24 116.7 78 74.4
CSS0042159 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 2.1e-22 111.7 94 67.0
CSS0023758 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 3.6e-22 110.9 91 68.1
CSS0039220 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 2.0e-20 105.1 90 68.9
Sc18g0007390 Simmondsia chinensis HOM05D006229 ORTHO05D007190 4.0e-13 80.9 77 50.6
CAN.G474.28 Capsicum annuum HOM05D006229 ORTHO05D000001 9.9e-12 76.3 47 78.7
Sc18g0007380 Simmondsia chinensis HOM05D006229 ORTHO05D007190 1.3e-11 75.9 94 48.9
Migut.B00450 Erythranthe guttata HOM05D006229 ORTHO05D007190 4.9e-11 73.9 52 65.4
CBR_g17833 Chara braunii HOM05D006229 ORTHO05D007190 7.1e-10 70.1 90 44.4
SEGI_21265 Sequoiadendron giganteum HOM05D006229 ORTHO05D007190 1.5e-07 62.4 50 66.0
SHI04983 Sapria himalayana HOM05D000023 ORTHO05D000014 3.3e-07 61.2 132 34.8
CSS0040212 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D007190 1.6e-06 58.9 41 73.2


User provided reference genes

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