Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g03370 Fragaria vesca HOM05D001756 ORTHO05D001581 1.8e-41 172.2 88 100.0
FAN24G1384 Fragaria x ananassa HOM05D001756 ORTHO05D001581 6.4e-39 163.7 85 98.8
FvH4_2g03340 Fragaria vesca HOM05D001756 ORTHO05D001581 1.6e-34 149.1 85 90.6
FAN27G0458 Fragaria x ananassa HOM05D001756 ORTHO05D001581 3.7e-34 147.9 85 89.4
FAN20G1648 Fragaria x ananassa HOM05D001756 ORTHO05D001581 1.4e-33 146.0 86 90.7
RcHm_v2.0_Chr6g0248481 Rosa chinensis HOM05D001756 ORTHO05D001581 1.2e-32 142.9 85 85.9
FAN15G1815 Fragaria x ananassa HOM05D001756 ORTHO05D001581 2.8e-18 95.1 53 94.3
Prupe.8G150200 Prunus persica HOM05D001756 ORTHO05D001581 6.3e-18 94.0 82 67.1
TWI59G0044 Tripterygium wilfordii HOM05D001756 ORTHO05D001581 1.1e-17 93.2 84 63.1
MD05G1105500 Malus domestica HOM05D001756 ORTHO05D001581 4.5e-16 87.8 86 62.8
TWI23G1082 Tripterygium wilfordii HOM05D001756 ORTHO05D001581 1.3e-15 86.3 85 60.0
Cfa004702 Carpinus fangiana HOM05D001756 ORTHO05D001581 1.7e-15 85.9 81 58.0
CiPaw.05G020600 Carya illinoinensis HOM05D001756 ORTHO05D001581 1.7e-15 85.9 82 57.3
MD10G1110000 Malus domestica HOM05D001756 ORTHO05D001581 1.9e-14 82.4 83 61.4
Haze_10304 Corylus avellana HOM05D001756 ORTHO05D001581 2.5e-14 82.0 81 55.6
GSVIVG01037055001 Vitis vinifera HOM05D001756 ORTHO05D001581 5.5e-14 80.9 83 57.8
CSS0048145 Camellia sinensis var. sinensis HOM05D001756 ORTHO05D001581 9.4e-14 80.1 81 59.3
Dinv09540 Davidia involucrata HOM05D001756 ORTHO05D001581 9.4e-14 80.1 79 58.2
RhsimUnG0041200 Rhododendron simsii HOM05D001756 ORTHO05D001581 1.6e-13 79.3 74 56.8
RhsimUnG0123200 Rhododendron simsii HOM05D001756 ORTHO05D001581 1.6e-13 79.3 74 56.8
vmacro01947 Vaccinium macrocarpon HOM05D001756 ORTHO05D001581 1.6e-13 79.3 79 58.2
Dinv16070 Davidia involucrata HOM05D001756 ORTHO05D001581 7.9e-13 77.0 80 58.8
CSS0039448 Camellia sinensis var. sinensis HOM05D001756 ORTHO05D001581 1.0e-12 76.6 79 55.7
CSS0040959 Camellia sinensis var. sinensis HOM05D001756 ORTHO05D001581 1.0e-12 76.6 79 55.7
CSS0000381 Camellia sinensis var. sinensis HOM05D001756 ORTHO05D001581 3.0e-12 75.1 79 54.4
Thecc.02G119700 Theobroma cacao HOM05D001756 ORTHO05D001581 8.8e-12 73.6 84 53.6
QL11p029356 Quercus lobata HOM05D001756 ORTHO05D001581 2.0e-11 72.4 79 48.1
Actinidia00357 Actinidia chinensis HOM05D001756 ORTHO05D001581 2.5e-11 72.0 79 54.4
Actinidia16413 Actinidia chinensis HOM05D001756 ORTHO05D001581 5.7e-11 70.9 83 49.4
TAR628G0014 Trochodendron aralioides HOM05D001756 ORTHO05D001581 9.7e-11 70.1 81 51.9
Duzib132G0635 Durio zibethinus HOM05D001756 ORTHO05D001581 1.3e-10 69.7 85 51.8
Lj5g0025862 Lotus japonicus HOM05D001756 ORTHO05D001581 1.3e-10 69.7 75 50.7
Cc02_g20030 Coffea canephora HOM05D001756 ORTHO05D001581 1.7e-10 69.3 77 51.9
Hma1.2p1_1051F.1_g252120 Hydrangea macrophylla HOM05D001756 ORTHO05D001581 1.7e-10 69.3 79 50.6
Lsat_1_v5_gn_5_117161 Lactuca sativa HOM05D001756 ORTHO05D001581 1.7e-10 69.3 76 51.3
Manes.07G057300 Manihot esculenta HOM05D001756 ORTHO05D001581 2.8e-10 68.6 84 52.4
RhsimUnG0122800 Rhododendron simsii HOM05D001756 ORTHO05D001581 2.8e-10 68.6 81 46.9
CSS0048277 Camellia sinensis var. sinensis HOM05D001756 ORTHO05D001581 4.8e-10 67.8 81 49.4
Potri.007G006800 Populus trichocarpa HOM05D001756 ORTHO05D001581 4.8e-10 67.8 83 51.8
CSS0049317 Camellia sinensis var. sinensis HOM05D001756 ORTHO05D001581 8.2e-10 67.0 81 49.4
Sabra07G0005100 Salix brachista HOM05D001756 ORTHO05D001581 8.2e-10 67.0 83 50.6
Sabra09G0065700 Salix brachista HOM05D001756 ORTHO05D001581 8.2e-10 67.0 79 46.8
TAR376G0419 Trochodendron aralioides HOM05D001756 ORTHO05D001581 8.2e-10 67.0 79 50.6
Atru.chr5.2299 Acer truncatum HOM05D001756 ORTHO05D001581 1.1e-09 66.6 82 50.0
Glyma.10G255800 Glycine max HOM05D001756 ORTHO05D001581 1.1e-09 66.6 83 49.4
Rhsim08G0091400 Rhododendron simsii HOM05D001756 ORTHO05D001581 1.1e-09 66.6 81 45.7
Glyma.20G135700 Glycine max HOM05D001756 ORTHO05D001581 1.4e-09 66.2 83 47.0
HanXRQChr03g0074741 Helianthus annuus HOM05D001756 ORTHO05D001581 1.4e-09 66.2 79 45.6
Hma1.2p1_1760F.1_g301210 Hydrangea macrophylla HOM05D001756 ORTHO05D001581 1.4e-09 66.2 79 49.4
Rhsim08G0091500 Rhododendron simsii HOM05D001756 ORTHO05D001581 1.8e-09 65.9 81 48.1
Dinv23040 Davidia involucrata HOM05D001756 ORTHO05D001581 2.4e-09 65.5 80 51.2
Potri.009G085600 Populus trichocarpa HOM05D001756 ORTHO05D001581 2.4e-09 65.5 79 48.1
RcHm_v2.0_Chr6g0309921 Rosa chinensis HOM05D001756 ORTHO05D001581 2.4e-09 65.5 84 50.0
vmacro01948 Vaccinium macrocarpon HOM05D001756 ORTHO05D001581 2.4e-09 65.5 81 49.4
CiPaw.06G164100 Carya illinoinensis HOM05D001756 ORTHO05D001581 3.1e-09 65.1 79 49.4
CANSAT25G3420 Cannabis sativa HOM05D001756 ORTHO05D001581 4.1e-09 64.7 91 48.4
Hma1.2p1_2434F.1_g322120 Hydrangea macrophylla HOM05D001756 ORTHO05D001581 4.1e-09 64.7 79 48.1
Potri.014G006900 Populus trichocarpa HOM05D001756 ORTHO05D001581 4.1e-09 64.7 85 48.2
Thecc.01G075600 Theobroma cacao HOM05D001756 ORTHO05D001581 4.1e-09 64.7 79 50.6
Duzib264G0169 Durio zibethinus HOM05D001756 ORTHO05D001581 5.3e-09 64.3 79 49.4
Lj4A164T42 Lonicera japonica HOM05D001756 ORTHO05D001581 5.3e-09 64.3 79 43.0
ECA238G4790 Erigeron canadensis HOM05D001756 ORTHO05D001581 6.9e-09 63.9 84 48.8
Phvul.007G047000 Phaseolus vulgaris HOM05D001756 ORTHO05D001581 6.9e-09 63.9 84 48.8
FAN27G1437 Fragaria x ananassa HOM05D001756 ORTHO05D001581 9.1e-09 63.5 82 52.4
Sabra14G0006400 Salix brachista HOM05D001756 ORTHO05D001581 9.1e-09 63.5 83 47.0
Actinidia28000 Actinidia chinensis HOM05D001756 ORTHO05D001581 1.2e-08 63.2 75 56.0
Duzib187G0009 Durio zibethinus HOM05D001756 ORTHO05D001581 1.2e-08 63.2 81 45.7
FvH4_2g32750 Fragaria vesca HOM05D001756 ORTHO05D001581 1.2e-08 63.2 82 52.4
FAN24G1728 Fragaria x ananassa HOM05D001756 ORTHO05D001581 1.2e-08 63.2 82 52.4
MD08G1079100 Malus domestica HOM05D001756 ORTHO05D001581 1.5e-08 62.8 73 52.1
Ciclev10029689m.g Citrus clementina HOM05D001756 ORTHO05D001581 2.0e-08 62.4 84 46.4
Eucgr.I02494 Eucalyptus grandis HOM05D001756 ORTHO05D001581 2.0e-08 62.4 83 44.6
FAN15G0430 Fragaria x ananassa HOM05D001756 ORTHO05D001581 2.0e-08 62.4 82 51.2
Prupe.6G217500 Prunus persica HOM05D001756 ORTHO05D001581 2.0e-08 62.4 72 50.0
Atru.chr3.1054 Acer truncatum HOM05D001756 ORTHO05D001581 2.6e-08 62.0 83 48.2
Rhsim10G0094800 Rhododendron simsii HOM05D001756 ORTHO05D001581 2.6e-08 62.0 81 48.1
Duzib147G1196 Durio zibethinus HOM05D001756 ORTHO05D001581 3.4e-08 61.6 73 47.9
Gohir.D06G022100 Gossypium hirsutum HOM05D001756 ORTHO05D001581 3.4e-08 61.6 77 49.4
Gorai.010G026700 Gossypium raimondii HOM05D001756 ORTHO05D001581 3.4e-08 61.6 77 49.4
Eucgr.H02324 Eucalyptus grandis HOM05D001756 ORTHO05D001581 4.5e-08 61.2 79 45.6
Duzib248G0626 Durio zibethinus HOM05D001756 ORTHO05D001581 5.9e-08 60.8 87 47.1
Gohir.A06G025000 Gossypium hirsutum HOM05D001756 ORTHO05D001581 5.9e-08 60.8 76 47.4
Sed0002457 Sechium edule HOM05D001756 ORTHO05D001581 5.9e-08 60.8 85 43.5
GSVIVG01004437001 Vitis vinifera HOM05D001756 ORTHO05D001581 5.9e-08 60.8 72 50.0
Thecc.08G085400 Theobroma cacao HOM05D001756 ORTHO05D001581 7.7e-08 60.5 69 50.7
Dinv44936 Davidia involucrata HOM05D001756 ORTHO05D001581 1.0e-07 60.1 80 51.2
MD02G1189200 Malus domestica HOM05D001756 ORTHO05D001581 1.0e-07 60.1 77 45.5
MD15G1066300 Malus domestica HOM05D001756 ORTHO05D001581 1.0e-07 60.1 72 48.6
Sopen02g036700 Solanum pennellii HOM05D001756 ORTHO05D001581 1.0e-07 60.1 71 47.9
Actinidia04395 Actinidia chinensis HOM05D001756 ORTHO05D001581 1.3e-07 59.7 78 51.3
Dinv26955 Davidia involucrata HOM05D001756 ORTHO05D001581 1.3e-07 59.7 82 47.6
HanXRQChr03g0072941 Helianthus annuus HOM05D001756 ORTHO05D001581 1.3e-07 59.7 76 46.1
Manes.12G117100 Manihot esculenta HOM05D001756 ORTHO05D001581 1.3e-07 59.7 86 45.3
RcHm_v2.0_Chr2g0108571 Rosa chinensis HOM05D001756 ORTHO05D001581 1.3e-07 59.7 79 45.6
Duzib093G0345 Durio zibethinus HOM05D001756 ORTHO05D001581 1.7e-07 59.3 69 50.7
ECA232G1256 Erigeron canadensis HOM05D000549 ORTHO05D008331 1.7e-07 59.3 71 47.9
Eucgr.I00676 Eucalyptus grandis HOM05D001756 ORTHO05D001581 1.7e-07 59.3 79 46.8
Sabra16G0181600 Salix brachista HOM05D001756 ORTHO05D001581 1.7e-07 59.3 79 44.3
CAN.G1343.3 Capsicum annuum HOM05D001756 ORTHO05D001581 2.2e-07 58.9 72 48.6
ECA234G1996 Erigeron canadensis HOM05D001756 ORTHO05D001581 2.2e-07 58.9 67 49.3
Eucgr.H02325 Eucalyptus grandis HOM05D001756 ORTHO05D001581 2.2e-07 58.9 79 41.8
FAN23G1434 Fragaria x ananassa HOM05D001756 ORTHO05D001581 2.2e-07 58.9 79 46.8
CsaV3_6G044290 Cucumis sativus L. HOM05D001756 ORTHO05D001581 2.9e-07 58.5 69 46.4
FAN26G2568 Fragaria x ananassa HOM05D001756 ORTHO05D001581 2.9e-07 58.5 79 46.8
Oeu028918.1 Olea europaea HOM05D001756 ORTHO05D001581 2.9e-07 58.5 81 42.0
CiPaw.07G172800 Carya illinoinensis HOM05D001756 ORTHO05D001581 3.8e-07 58.2 82 46.3
Gohir.A11G212500 Gossypium hirsutum HOM05D001756 ORTHO05D001581 3.8e-07 58.2 80 45.0
Gohir.D12G076500 Gossypium hirsutum HOM05D001756 ORTHO05D001581 3.8e-07 58.2 70 47.1
Gorai.008G085100 Gossypium raimondii HOM05D001756 ORTHO05D001581 3.8e-07 58.2 70 47.1
HanXRQChr10g0305161 Helianthus annuus HOM05D001756 ORTHO05D001581 3.8e-07 58.2 76 44.7
Psat6g214400 Pisum sativum HOM05D001756 ORTHO05D001581 3.8e-07 58.2 85 41.2
Sc08g0004340 Simmondsia chinensis HOM05D001756 ORTHO05D001581 3.8e-07 58.2 78 44.9
vmacro18016 Vaccinium macrocarpon HOM05D001756 ORTHO05D001581 3.8e-07 58.2 83 47.0
Cc07_g07320 Coffea canephora HOM05D001756 ORTHO05D001581 5.0e-07 57.8 76 43.4
ECA246G3808 Erigeron canadensis HOM05D001756 ORTHO05D001581 5.0e-07 57.8 81 43.2
Hma1.2p1_0210F.1_g089330 Hydrangea macrophylla HOM05D001756 ORTHO05D001581 5.0e-07 57.8 79 46.8
Lsat_1_v5_gn_9_113360 Lactuca sativa HOM05D001756 ORTHO05D001581 5.0e-07 57.8 76 48.7
Lsat_1_v5_gn_3_86460 Lactuca sativa HOM05D001756 ORTHO05D001581 6.5e-07 57.4 81 45.7
MBI16_g32087_MAGBIO Magnolia biondii HOM05D001756 ORTHO05D001581 6.5e-07 57.4 72 47.2
Nitab4.5_0001099g0060 Nicotiana tabacum HOM05D001756 ORTHO05D001581 6.5e-07 57.4 83 47.0
PGSC0003DMG400021406 Solanum tuberosum HOM05D001756 ORTHO05D001581 6.5e-07 57.4 71 45.1
COL.COLO4_11608 Corchorus olitorius HOM05D001756 ORTHO05D001581 8.5e-07 57.0 79 44.3
Solyc02g092110.3 Solanum lycopersicum HOM05D001756 ORTHO05D001581 8.5e-07 57.0 71 45.1
THA.LOC104827714 Tarenaya hassleriana HOM05D001756 ORTHO05D001581 8.5e-07 57.0 83 48.2
TPR.G21156 Trifolium pratense HOM05D001756 ORTHO05D001581 8.5e-07 57.0 84 42.9
CSS0036107 Camellia sinensis var. sinensis HOM05D001756 ORTHO05D001581 1.1e-06 56.6 82 45.1
Medtr1g106030 Medicago truncatula HOM05D001756 ORTHO05D001581 1.1e-06 56.6 83 39.8
CAN.G606.70 Capsicum annuum HOM05D001756 ORTHO05D001581 1.4e-06 56.2 83 49.4
Cfa013750 Carpinus fangiana HOM05D001756 ORTHO05D001581 1.4e-06 56.2 85 47.1
CiPaw.01G002400 Carya illinoinensis HOM05D001756 ORTHO05D001581 1.4e-06 56.2 77 42.9
Duzib116G0348 Durio zibethinus HOM05D001756 ORTHO05D001581 1.4e-06 56.2 77 46.8
Lj7A111T6 Lonicera japonica HOM05D001756 ORTHO05D001581 1.4e-06 56.2 79 44.3
MD15G1300000 Malus domestica HOM05D001756 ORTHO05D001581 1.4e-06 56.2 77 42.9
PSO017G5266 Papaver somniferum HOM05D001756 ORTHO05D001581 1.4e-06 56.2 81 44.4
TWI74G0998 Tripterygium wilfordii HOM05D001756 ORTHO05D001581 1.4e-06 56.2 81 45.7
C08p24800 Brassica napus HOM05D001756 ORTHO05D001581 1.9e-06 55.8 69 47.8
Gohir.A03G181100 Gossypium hirsutum HOM05D001756 ORTHO05D001581 1.9e-06 55.8 88 42.0
Gohir.A12G078300 Gossypium hirsutum HOM05D001756 ORTHO05D001581 1.9e-06 55.8 73 43.8
PGR142G2395 Punica granatum HOM05D001756 ORTHO05D001581 1.9e-06 55.8 73 43.8
BcaB01g00674 Brassica carinata HOM05D001756 ORTHO05D001581 2.5e-06 55.5 67 47.8
CARHR158860 Cardamine hirsuta HOM05D001756 ORTHO05D001581 2.5e-06 55.5 72 45.8
HanXRQChr12g0376281 Helianthus annuus HOM05D001756 ORTHO05D001581 2.5e-06 55.5 81 42.0
Manes.13G109600 Manihot esculenta HOM05D001756 ORTHO05D001581 2.5e-06 55.5 81 45.7
EL10Ac6g15597 Beta vulgaris HOM05D001756 ORTHO05D001581 3.2e-06 55.1 82 46.3
BcaC07g39442 Brassica carinata HOM05D001756 ORTHO05D001581 3.2e-06 55.1 67 47.8
Actinidia34539 Actinidia chinensis HOM05D001756 ORTHO05D001581 4.2e-06 54.7 79 44.3
MBI16_g16475_MAGBIO Magnolia biondii HOM05D001756 ORTHO05D001581 4.2e-06 54.7 72 45.8
Sp7g35370 Schrenkiella parvula HOM05D012092 ORTHO05D001581 4.2e-06 54.7 88 40.9
Atru.chr13.861 Acer truncatum HOM05D001756 ORTHO05D001581 5.5e-06 54.3 69 43.5
BolC8t50097H Brassica oleracea HOM05D001756 ORTHO05D001581 5.5e-06 54.3 69 46.4
Thhalv10010875m.g Eutrema salsugineum HOM05D001756 ORTHO05D001581 5.5e-06 54.3 76 47.4
Gorai.013G051800 Gossypium raimondii HOM05D001756 ORTHO05D001581 5.5e-06 54.3 89 42.7
Lj2g0014409 Lotus japonicus HOM05D001756 ORTHO05D001581 5.5e-06 54.3 67 44.8
Sed0023507 Sechium edule HOM05D001756 ORTHO05D001581 5.5e-06 54.3 86 44.2
CSS0026516 Camellia sinensis var. sinensis HOM05D001756 ORTHO05D001581 7.2e-06 53.9 79 44.3
Cpa.g.c33491 Carica papaya HOM05D001756 ORTHO05D001581 7.2e-06 53.9 82 47.6
CiPaw.02G001200 Carya illinoinensis HOM05D001756 ORTHO05D001581 7.2e-06 53.9 81 40.7
Gohir.D13G046100 Gossypium hirsutum HOM05D001756 ORTHO05D001581 7.2e-06 53.9 89 42.7
SalBow3G1129 Salvia bowleyana HOM05D001756 ORTHO05D001581 7.2e-06 53.9 73 42.5
PGSC0003DMG400004941 Solanum tuberosum HOM05D001756 ORTHO05D001581 7.2e-06 53.9 76 44.7
THA.LOC104825794 Tarenaya hassleriana HOM05D001756 ORTHO05D015390 7.2e-06 53.9 74 47.3
COL.COLO4_28472 Corchorus olitorius HOM05D001756 ORTHO05D001581 9.4e-06 53.5 80 45.0
Gorai.005G229900 Gossypium raimondii HOM05D001756 ORTHO05D001581 9.4e-06 53.5 88 42.0
PSO170G3613 Papaver somniferum HOM05D001756 ORTHO05D001581 9.4e-06 53.5 81 43.2
PGR042G3192 Punica granatum HOM05D001756 ORTHO05D001581 9.4e-06 53.5 75 46.7


User provided reference genes

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