Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g03360 Fragaria vesca HOM05D003739 ORTHO05D003996 4.1e-240 834.3 428 100.0
FAN24G0708 Fragaria x ananassa HOM05D003739 ORTHO05D003996 2.1e-215 752.3 496 82.5
FvH4_2g03400 Fragaria vesca HOM05D003739 ORTHO05D003996 2.8e-180 635.6 487 73.3
RcHm_v2.0_Chr5g0054461 Rosa chinensis HOM05D003739 ORTHO05D003996 7.0e-139 498.0 526 57.4
FAN27G3438 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.8e-134 483.4 475 62.7
RcHm_v2.0_Chr6g0265811 Rosa chinensis HOM05D003739 ORTHO05D003996 1.0e-129 467.6 520 56.0
FAN27G2905 Fragaria x ananassa HOM05D003739 ORTHO05D003996 8.0e-119 431.4 525 51.4
FvH4_2g09520 Fragaria vesca HOM05D003739 ORTHO05D003996 2.1e-111 406.8 527 51.8
FAN15G1163 Fragaria x ananassa HOM05D003739 ORTHO05D003996 8.3e-108 394.8 520 49.6
FAN24G2517 Fragaria x ananassa HOM05D003739 ORTHO05D003996 9.2e-107 391.3 520 51.2
RcHm_v2.0_Chr6g0265821 Rosa chinensis HOM05D003739 ORTHO05D003996 1.5e-88 330.9 308 62.0
FvH4_2g09510 Fragaria vesca HOM05D003739 ORTHO05D003996 1.2e-74 284.6 458 44.3
FAN24G0282 Fragaria x ananassa HOM05D003739 ORTHO05D003996 3.2e-67 260.0 135 98.5
MD10G1070200 Malus domestica HOM05D003739 ORTHO05D003996 1.8e-57 227.6 527 37.4
Prupe.8G091800 Prunus persica HOM05D003739 ORTHO05D003996 2.2e-52 210.7 537 36.9
FAN15G1290 Fragaria x ananassa HOM05D003739 ORTHO05D003996 4.2e-43 179.9 147 70.1
QL11p044151 Quercus lobata HOM05D003739 ORTHO05D003996 2.6e-40 170.6 519 33.1
CiPaw.06G133400 Carya illinoinensis HOM05D003739 ORTHO05D003996 3.3e-40 170.2 541 32.2
CiPaw.10G121500 Carya illinoinensis HOM05D003739 ORTHO05D003996 4.8e-39 166.4 528 32.0
GSVIVG01023816001 Vitis vinifera HOM05D003739 ORTHO05D003996 9.1e-38 162.2 537 32.0
Haze_18940 Corylus avellana HOM05D004345 ORTHO05D005192 5.0e-36 156.4 535 33.1
Cfa005045 Carpinus fangiana HOM05D003739 ORTHO05D003996 1.6e-34 151.4 527 31.3
TAR628G0054 Trochodendron aralioides HOM05D003739 ORTHO05D003996 5.4e-30 136.3 542 28.8
Cpa.g.sc14.123 Carica papaya HOM05D003739 ORTHO05D003996 2.0e-29 134.4 456 29.6
Atru.chr12.1298 Acer truncatum HOM05D003739 ORTHO05D003996 3.5e-29 133.7 506 29.6
FAN20G1594 Fragaria x ananassa HOM05D003739 ORTHO05D003996 3.5e-29 133.7 139 55.4
Ciclev10027900m.g Citrus clementina HOM05D003739 ORTHO05D003996 4.5e-29 133.3 529 30.6
Potri.010G019600 Populus trichocarpa HOM05D003739 ORTHO05D003996 6.5e-28 129.4 336 33.3
CANSAT54G2857 Cannabis sativa HOM05D003739 ORTHO05D003996 4.0e-25 120.2 514 28.0
CSS0038123 Camellia sinensis var. sinensis HOM05D003739 ORTHO05D003996 6.3e-23 112.8 405 28.1
Actinidia35828 Actinidia chinensis HOM05D003739 ORTHO05D003996 2.4e-22 110.9 500 27.6
Atru.chr5.3065 Acer truncatum HOM05D003739 ORTHO05D003996 1.2e-21 108.6 327 31.5
Sabra10G0016300 Salix brachista HOM05D003739 ORTHO05D003996 5.9e-21 106.3 358 30.4
Sed0001527 Sechium edule HOM05D003739 ORTHO05D003996 5.9e-21 106.3 328 31.1
MSTRG.9105 Avicennia marina HOM05D003739 ORTHO05D003996 3.8e-20 103.6 517 28.0
Thecc.08G060300 Theobroma cacao HOM05D003739 ORTHO05D003996 8.6e-20 102.4 301 31.6
ECA234G4722 Erigeron canadensis HOM05D003739 ORTHO05D003996 1.1e-19 102.1 481 25.2
Manes.11G084700 Manihot esculenta HOM05D003739 ORTHO05D003996 1.5e-19 101.7 457 28.0
Oeu005537.3 Olea europaea HOM05D003739 ORTHO05D003996 1.9e-19 101.3 534 27.5
PSO339G5323 Papaver somniferum HOM05D003739 ORTHO05D003996 1.9e-19 101.3 430 27.9
TWI79G1707 Tripterygium wilfordii HOM05D003739 ORTHO05D003996 3.3e-19 100.5 499 27.5
CANSAT11G0250 Cannabis sativa HOM05D003739 ORTHO05D003996 4.2e-19 100.1 469 27.3
CsaV3_5G020720 Cucumis sativus L. HOM05D003739 ORTHO05D003996 4.2e-19 100.1 388 28.1
EL10Ac3g05170 Beta vulgaris HOM05D003739 ORTHO05D003996 7.2e-19 99.4 467 27.0
TAR376G0790 Trochodendron aralioides HOM05D003739 ORTHO05D003996 9.5e-19 99.0 267 32.6
ClCG01G008230 Citrullus lanatus HOM05D003739 ORTHO05D003996 1.6e-18 98.2 545 27.7
Nn4g24182 Nelumbo nucifera HOM05D003739 ORTHO05D003996 1.6e-18 98.2 528 26.9
Cc09_g05210 Coffea canephora HOM05D003739 ORTHO05D003996 2.8e-18 97.4 493 27.8
Dinv05658 Davidia involucrata HOM05D003739 ORTHO05D003996 8.0e-18 95.9 298 33.6
Lj8C306T17 Lonicera japonica HOM05D003739 ORTHO05D003996 1.4e-17 95.1 375 29.9
Gohir.D09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 1.8e-17 94.7 326 28.2
AUR62028080 Chenopodium quinoa HOM05D003739 ORTHO05D003996 5.2e-17 93.2 506 26.3
Gorai.006G107300 Gossypium raimondii HOM05D003739 ORTHO05D003996 8.9e-17 92.4 516 26.0
Sed0009728 Sechium edule HOM05D003739 ORTHO05D003996 1.2e-16 92.0 360 28.9
HanXRQChr10g0289001 Helianthus annuus HOM05D003739 ORTHO05D003996 2.0e-16 91.3 265 27.9
Atru.chr12.1559 Acer truncatum HOM05D003739 ORTHO05D003996 3.4e-16 90.5 262 34.7
THA.LOC104800691 Tarenaya hassleriana HOM05D003739 ORTHO05D003996 5.7e-16 89.7 393 25.2
PSO675G5166 Papaver somniferum HOM05D003739 ORTHO05D003996 9.8e-16 89.0 328 29.0
MBI16_g35489_MAGBIO Magnolia biondii HOM05D033968 ORTHO05D003996 8.3e-15 85.9 319 27.9
PSO541G6540 Papaver somniferum HOM05D003739 ORTHO05D003996 8.3e-15 85.9 326 28.5
PSO063G1830 Papaver somniferum HOM05D003739 ORTHO05D003996 1.8e-14 84.7 356 28.9
Duzib187G1144 Durio zibethinus HOM05D003739 ORTHO05D003996 5.4e-14 83.2 525 26.1
Lalb_Chr11g0068001 Lupinus albus HOM05D003739 ORTHO05D003996 9.2e-14 82.4 246 29.3
CDE06G1699 Ceratophyllum demersum HOM05D003739 ORTHO05D003996 3.5e-13 80.5 324 25.9
AUR62005990 Chenopodium quinoa HOM05D003739 ORTHO05D003996 7.8e-13 79.3 340 27.6
CAN.G809.70 Capsicum annuum HOM05D003739 ORTHO05D003996 1.0e-12 79.0 328 28.0
PGR042G2822 Punica granatum HOM05D003739 ORTHO05D003996 1.7e-12 78.2 366 27.3
Migut.F00900 Erythranthe guttata HOM05D003739 ORTHO05D003996 2.9e-12 77.4 443 27.1
vmacro15435 Vaccinium macrocarpon HOM05D003739 ORTHO05D003996 8.6e-12 75.9 137 38.7
Aqoxy2G03991 Aquilegia oxysepala HOM05D003739 ORTHO05D003996 3.3e-11 73.9 333 25.2
Glyma.11G010900 Glycine max HOM05D003739 ORTHO05D003996 3.3e-11 73.9 386 29.0
Dinv05659 Davidia involucrata HOM05D003739 ORTHO05D003996 7.3e-11 72.8 144 38.2
Nitab4.5_0006794g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 1.6e-10 71.6 281 28.5
VMungo1215G1752 Vigna mungo HOM05D003739 ORTHO05D003996 6.2e-10 69.7 255 29.0
Glyma.01G228200 Glycine max HOM05D003739 ORTHO05D003996 1.8e-09 68.2 427 26.5
ATR0564G411 Amborella trichopoda HOM05D003739 ORTHO05D003996 3.1e-09 67.4 249 28.5
Hund09717 Selenicereus undatus HOM05D003739 ORTHO05D003996 3.1e-09 67.4 519 26.2
SGA_v2.0_scaffold62G21539 Striga asiatica HOM05D003739 ORTHO05D003996 5.2e-09 66.6 470 24.5
arahy.Tifrunner.gnm1.ann1.H3NIN5 Arachis hypogaea HOM05D003739 ORTHO05D003996 6.8e-09 66.2 338 25.1
PGSC0003DMG402017733 Solanum tuberosum HOM05D003739 ORTHO05D003996 6.8e-09 66.2 251 26.3
Ca_17694_v3 Cicer arietinum L. HOM05D003739 ORTHO05D003996 1.2e-08 65.5 387 25.3
Psat7g051640 Pisum sativum HOM05D003739 ORTHO05D003996 1.2e-08 65.5 143 30.1
SalBow6G4317 Salvia bowleyana HOM05D003739 ORTHO05D003996 1.2e-08 65.5 190 28.9
Sopen02g026250 Solanum pennellii HOM05D003739 ORTHO05D003996 1.5e-08 65.1 350 25.1
Eucgr.A01623 Eucalyptus grandis HOM05D003739 ORTHO05D003996 2.6e-08 64.3 487 24.4
Pp3c18_8710 Physcomitrium patens HOM05D003739 ORTHO05D003996 2.6e-08 64.3 83 41.0
Gohir.A09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 5.8e-08 63.2 497 24.7
CARHR106820 Cardamine hirsuta HOM05D003739 ORTHO05D003996 9.8e-08 62.4 157 33.8
LjContig00222g0016564 Lotus japonicus HOM05D003739 ORTHO05D003996 2.9e-07 60.8 275 25.1
Nitab4.5_0004903g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 2.9e-07 60.8 433 24.0
SEGI_13436 Sequoiadendron giganteum HOM05D003739 ORTHO05D003996 2.9e-07 60.8 101 37.6
TPR.G2246 Trifolium pratense HOM05D003739 ORTHO05D003996 4.9e-07 60.1 97 38.1
Medtr8g091830 Medicago truncatula HOM05D003739 ORTHO05D003996 6.4e-07 59.7 140 35.0
HPP92_028201 Vanilla planifolia HOM05D003739 ORTHO05D003996 8.3e-07 59.3 292 25.0
Pp3c21_11880 Physcomitrium patens HOM05D003739 ORTHO05D003996 1.1e-06 58.9 129 30.2
Lsat_1_v5_gn_5_112881 Lactuca sativa HOM05D003739 ORTHO05D003996 1.4e-06 58.5 474 23.4
Mapoly0023s0090 Marchantia polymorpha HOM05D003739 ORTHO05D003996 1.4e-06 58.5 122 32.8
Hma1.2p1_1073F.1_g254250 Hydrangea macrophylla HOM05D003739 ORTHO05D003996 1.9e-06 58.2 87 35.6
Hund09716 Selenicereus undatus HOM05D003739 ORTHO05D003996 1.9e-06 58.2 156 36.5
Peaxi162Scf00048g01417 Petunia axillaris HOM05D003739 ORTHO05D003996 2.4e-06 57.8 266 26.3
Dinv13445 Davidia involucrata HOM05D003739 ORTHO05D003996 3.2e-06 57.4 225 27.1
Phvul.002G039700 Phaseolus vulgaris HOM05D003739 ORTHO05D003996 4.1e-06 57.0 243 26.7
Glyma.10G205233 Glycine max HOM05D003739 ORTHO05D003996 5.4e-06 56.6 188 32.4
Zm00001eb261130 Zea mays HOM05D025681 ORTHO05D003996 5.4e-06 56.6 61 42.6
Aa31LG7G15010 Aethionema arabicum HOM05D003739 ORTHO05D003996 9.2e-06 55.8 164 30.5
unitig_46.g18632 Utricularia gibba HOM05D003739 ORTHO05D003996 9.2e-06 55.8 410 23.7


User provided reference genes

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