Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g03130 Fragaria vesca HOM05D005311 ORTHO05D006160 1.3e-114 416.4 212 100.0
FAN24G0492 Fragaria x ananassa HOM05D005311 ORTHO05D006160 2.1e-112 409.1 216 97.7
FAN27G0024 Fragaria x ananassa HOM05D005311 ORTHO05D006160 7.5e-110 400.6 216 96.3
FAN20G1889 Fragaria x ananassa HOM05D005311 ORTHO05D006160 8.3e-109 397.1 216 95.4
FAN15G1540 Fragaria x ananassa HOM05D005311 ORTHO05D006160 1.1e-105 386.7 208 95.7
RcHm_v2.0_Chr6g0248001 Rosa chinensis HOM05D005311 ORTHO05D006160 1.5e-97 359.8 249 79.5
MD05G1106900 Malus domestica HOM05D005311 ORTHO05D006160 3.0e-82 308.9 224 73.7
MD10G1111900 Malus domestica HOM05D005311 ORTHO05D006160 4.8e-80 301.6 224 74.6
Atru.chr5.2262 Acer truncatum HOM05D005311 ORTHO05D006160 1.4e-68 263.5 219 66.2
CANSAT25G3378 Cannabis sativa HOM05D005311 ORTHO05D006160 3.5e-67 258.8 223 63.2
GSVIVG01037044001 Vitis vinifera HOM05D005311 ORTHO05D006160 3.5e-67 258.8 218 64.7
CiPaw.05G021200 Carya illinoinensis HOM05D005311 ORTHO05D006160 4.6e-67 258.5 223 62.3
Prupe.8G151000 Prunus persica HOM05D005311 ORTHO05D006160 1.1e-65 253.8 180 75.6
Gohir.D12G019000 Gossypium hirsutum HOM05D005311 ORTHO05D006160 9.6e-65 250.8 217 61.8
COL.COLO4_32478 Corchorus olitorius HOM05D005311 ORTHO05D006160 1.6e-64 250.0 218 63.3
Gohir.A12G018400 Gossypium hirsutum HOM05D005311 ORTHO05D006160 1.6e-64 250.0 217 62.2
Gorai.008G019300 Gossypium raimondii HOM05D005311 ORTHO05D006160 4.8e-64 248.4 217 61.3
Manes.07G056400 Manihot esculenta HOM05D005311 ORTHO05D006160 1.1e-63 247.3 220 61.4
TWI59G0049 Tripterygium wilfordii HOM05D005311 ORTHO05D006160 1.8e-63 246.5 220 61.4
TWI14G0308 Tripterygium wilfordii HOM05D005311 ORTHO05D006160 3.1e-63 245.7 220 61.8
Potri.009G084800 Populus trichocarpa HOM05D005311 ORTHO05D006160 5.3e-63 245.0 222 62.6
Ciclev10029272m.g Citrus clementina HOM05D005311 ORTHO05D006160 9.0e-63 244.2 220 62.3
Rhsim11G0150000 Rhododendron simsii HOM05D005311 ORTHO05D006160 1.2e-62 243.8 222 61.7
QL11p029204 Quercus lobata HOM05D005311 ORTHO05D006160 1.5e-62 243.4 241 57.3
Sed0009957 Sechium edule HOM05D005311 ORTHO05D006160 2.0e-62 243.0 224 60.3
Thecc.02G120600 Theobroma cacao HOM05D005311 ORTHO05D006160 2.6e-62 242.7 217 59.9
Gohir.D02G203104 Gossypium hirsutum HOM05D005311 ORTHO05D006160 2.9e-61 239.2 217 58.5
Gohir.A03G180600 Gossypium hirsutum HOM05D005311 ORTHO05D006160 5.0e-61 238.4 217 58.5
Duzib052G0370 Durio zibethinus HOM05D005311 ORTHO05D006160 6.5e-61 238.0 218 59.6
Gorai.005G229500 Gossypium raimondii HOM05D005311 ORTHO05D006160 1.1e-60 237.3 217 58.1
MELO3C018026.2 Cucumis melo HOM05D005311 ORTHO05D006160 7.2e-60 234.6 220 59.1
Eucgr.I02500 Eucalyptus grandis HOM05D005311 ORTHO05D006160 1.2e-59 233.8 225 59.1
arahy.Tifrunner.gnm1.ann1.KVB0K0 Arachis hypogaea HOM05D005311 ORTHO05D006160 4.6e-59 231.9 235 56.6
Potri.001G289400 Populus trichocarpa HOM05D005311 ORTHO05D006160 7.9e-59 231.1 217 60.4
TAR376G1236 Trochodendron aralioides HOM05D000442 ORTHO05D006160 2.3e-58 229.6 218 57.3
ECA240G0703 Erigeron canadensis HOM05D005311 ORTHO05D006160 3.9e-58 228.8 219 60.3
Phvul.007G047500 Phaseolus vulgaris HOM05D005311 ORTHO05D006160 6.7e-58 228.0 222 56.3
Glyma.10G255200 Glycine max HOM05D005311 ORTHO05D006160 8.7e-58 227.6 226 57.5
TAR628G1269 Trochodendron aralioides HOM05D005311 ORTHO05D006160 1.1e-57 227.3 227 57.3
Actinidia00352 Actinidia chinensis HOM05D005311 ORTHO05D006160 1.9e-57 226.5 224 56.7
Lsat_1_v5_gn_9_113920 Lactuca sativa HOM05D005311 ORTHO05D006160 2.5e-57 226.1 217 59.0
Medtr1g105970 Medicago truncatula HOM05D005311 ORTHO05D006160 4.3e-57 225.3 219 56.6
Lalb_Chr21g0307981 Lupinus albus HOM05D005311 ORTHO05D006160 9.7e-57 224.2 222 57.2
Lalb_Chr16g0376301 Lupinus albus HOM05D005311 ORTHO05D006160 1.6e-56 223.4 209 58.9
CSS0009611 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 2.8e-56 222.6 220 58.6
Cpa.g.sc106.28 Carica papaya HOM05D005311 ORTHO05D006160 4.8e-56 221.9 275 48.7
TAR625G0307 Trochodendron aralioides HOM05D005311 ORTHO05D006160 4.8e-56 221.9 227 58.1
Actinidia02445 Actinidia chinensis HOM05D005311 ORTHO05D006160 6.3e-56 221.5 224 54.9
Lsat_1_v5_gn_7_84560 Lactuca sativa HOM05D005311 ORTHO05D006160 8.2e-56 221.1 220 56.8
Lj5g0014269 Lotus japonicus HOM05D005311 ORTHO05D006160 8.2e-56 221.1 223 56.1
Cc02_g20120 Coffea canephora HOM05D005311 ORTHO05D006160 6.9e-55 218.0 222 56.3
SalBow6G1857 Salvia bowleyana HOM05D005311 ORTHO05D006160 6.9e-55 218.0 213 58.2
Sopen01g049100 Solanum pennellii HOM05D005311 ORTHO05D006160 6.9e-55 218.0 222 55.0
Peaxi162Scf00016g03127 Petunia axillaris HOM05D005311 ORTHO05D006160 1.2e-54 217.2 210 57.6
Solyc01g106790.3 Solanum lycopersicum HOM05D005311 ORTHO05D006160 1.5e-54 216.9 223 54.7
Aqoxy5G01939 Aquilegia oxysepala HOM05D005311 ORTHO05D006160 2.6e-54 216.1 171 66.7
Ca_11020_v3 Cicer arietinum L. HOM05D005311 ORTHO05D006160 3.4e-54 215.7 217 55.3
HanXRQChr15g0495651 Helianthus annuus HOM05D005311 ORTHO05D006160 3.4e-54 215.7 213 56.8
Lalb_Chr02g0144871 Lupinus albus HOM05D005311 ORTHO05D006160 4.5e-54 215.3 222 54.5
Nitab4.5_0000772g0050 Nicotiana tabacum HOM05D005311 ORTHO05D006160 4.5e-54 215.3 217 57.1
PGSC0003DMG400025735 Solanum tuberosum HOM05D005311 ORTHO05D006160 4.5e-54 215.3 222 54.5
CAN.G606.76 Capsicum annuum HOM05D005311 ORTHO05D006160 1.3e-53 213.8 226 54.4
SGA_v2.0_scaffold32G12981 Striga asiatica HOM05D005311 ORTHO05D006160 2.2e-53 213.0 220 53.2
Glyma.20G136100 Glycine max HOM05D005311 ORTHO05D006160 3.8e-53 212.2 226 55.8
Nitab4.5_0009103g0020 Nicotiana tabacum HOM05D005311 ORTHO05D006160 5.0e-53 211.8 214 56.5
Migut.B00474 Erythranthe guttata HOM05D005311 ORTHO05D006160 6.5e-53 211.5 216 56.0
Sc18g0007330 Simmondsia chinensis HOM05D005311 ORTHO05D006160 6.5e-53 211.5 222 54.5
arahy.Tifrunner.gnm1.ann1.QK2693 Arachis hypogaea HOM05D005311 ORTHO05D006160 1.9e-52 209.9 160 66.9
MSTRG.16668 Avicennia marina HOM05D005311 ORTHO05D006160 2.5e-52 209.5 221 53.8
Nn6g32054 Nelumbo nucifera HOM05D005311 ORTHO05D006160 4.2e-52 208.8 162 69.8
THA.LOC104815219 Tarenaya hassleriana HOM05D005311 ORTHO05D006160 5.5e-52 208.4 215 58.1
Actinidia28002 Actinidia chinensis HOM05D004628 ORTHO05D006160 9.4e-52 207.6 188 61.7
AUR62030871 Chenopodium quinoa HOM05D005311 ORTHO05D006160 3.6e-51 205.7 216 56.5
ClCG10G010010 Citrullus lanatus HOM05D005311 ORTHO05D006160 4.6e-51 205.3 156 68.6
VMungo0720G0066 Vigna mungo HOM05D005311 ORTHO05D006160 7.9e-51 204.5 155 67.7
AUR62027028 Chenopodium quinoa HOM05D005311 ORTHO05D006160 1.8e-50 203.4 212 57.1
Sabra16G0181000 Salix brachista HOM05D002370 ORTHO05D003878 1.8e-50 203.4 183 59.0
Hund00418 Selenicereus undatus HOM05D005311 ORTHO05D006160 2.0e-49 199.9 221 54.8
ATR0767G087 Amborella trichopoda HOM05D005311 ORTHO05D006160 2.5e-49 199.5 208 53.8
PSO210G6612 Papaver somniferum HOM05D005311 ORTHO05D006160 3.3e-49 199.1 222 53.6
CsaV3_4G000050 Cucumis sativus L. HOM05D005311 ORTHO05D006160 5.7e-49 198.4 153 66.7
Lj9A337G44 Lonicera japonica HOM05D005311 ORTHO05D006160 7.4e-49 198.0 155 69.0
DCAR_021939 Daucus carota HOM05D005311 ORTHO05D006160 2.2e-48 196.4 155 69.0
Ah.01g024570 Amaranthus hybridus HOM05D005311 ORTHO05D006160 3.7e-48 195.7 163 66.3
Thhalv10011774m.g Eutrema salsugineum HOM05D005311 ORTHO05D006160 4.8e-48 195.3 213 52.6
vmacro01940 Vaccinium macrocarpon HOM05D000211 ORTHO05D002517 6.3e-48 194.9 183 61.2
Carub.0001s3920 Capsella rubella HOM05D005311 ORTHO05D006160 1.8e-47 193.4 213 53.1
ECA236G2995 Erigeron canadensis HOM05D000211 ORTHO05D002517 1.8e-47 193.4 172 61.0
PSO447G0012 Papaver somniferum HOM05D005311 ORTHO05D006160 3.1e-47 192.6 222 53.6
Sp1g36880 Schrenkiella parvula HOM05D005311 ORTHO05D006160 6.9e-47 191.4 214 52.3
AL1G57590 Arabidopsis lyrata HOM05D005311 ORTHO05D006160 1.2e-46 190.7 218 52.3
AT1G50020 Arabidopsis thaliana HOM05D005311 ORTHO05D006160 2.6e-46 189.5 170 61.2
HanXRQChr03g0073011 Helianthus annuus HOM05D005311 ORTHO05D006160 3.4e-46 189.1 219 53.4
A08p03390 Brassica napus HOM05D005311 ORTHO05D006160 1.7e-45 186.8 216 53.2
BolC3t21257H Brassica oleracea HOM05D005311 ORTHO05D006160 5.0e-45 185.3 159 63.5
CARHR040130 Cardamine hirsuta HOM05D005311 ORTHO05D006160 6.5e-45 184.9 170 58.8
BraA08t32371Z Brassica rapa HOM05D005311 ORTHO05D006160 2.5e-44 183.0 216 51.9
C03p89430 Brassica napus HOM05D005311 ORTHO05D006160 4.2e-44 182.2 159 62.9
Duzib132G0391 Durio zibethinus HOM05D005311 ORTHO05D006160 1.0e-42 177.6 217 49.8
Lj5A221T62 Lonicera japonica HOM05D005311 ORTHO05D006160 8.8e-42 174.5 147 62.6
BcaB07g33454 Brassica carinata HOM05D005311 ORTHO05D006160 1.1e-41 174.1 160 60.6
BcaC08g43180 Brassica carinata HOM05D005311 ORTHO05D006160 1.1e-41 174.1 159 61.6
BolC6t35609H Brassica oleracea HOM05D005311 ORTHO05D006160 1.1e-41 174.1 159 61.6
C06p04800 Brassica napus HOM05D005311 ORTHO05D006160 1.5e-41 173.7 160 60.6
A06p03410 Brassica napus HOM05D005311 ORTHO05D006160 2.0e-41 173.3 178 56.7
BraA06t23549Z Brassica rapa HOM05D005311 ORTHO05D006160 2.0e-41 173.3 178 56.7
Aa31LG10G4090 Aethionema arabicum HOM05D002370 ORTHO05D003878 2.6e-41 172.9 165 56.4
Oeu037294.1 Olea europaea HOM05D005311 ORTHO05D006160 2.2e-40 169.9 146 62.3
GSVIVG01009264001 Vitis vinifera HOM05D005311 ORTHO05D006160 8.2e-40 167.9 160 55.6
Dinv09534 Davidia involucrata HOM05D000211 ORTHO05D002517 1.8e-39 166.8 178 53.9
CDE02G2678 Ceratophyllum demersum HOM05D005427 ORTHO05D006160 4.1e-39 165.6 166 53.0
TPR.G21150 Trifolium pratense HOM05D005311 ORTHO05D006160 5.3e-39 165.2 128 67.2
unitig_61.g26039 Utricularia gibba HOM05D005311 ORTHO05D006160 7.0e-39 164.9 211 47.9
EL10Ac9g22172 Beta vulgaris HOM05D005311 ORTHO05D006160 6.5e-37 158.3 182 55.5
Psat6g210680 Pisum sativum HOM05D005311 ORTHO05D006160 6.5e-37 158.3 127 63.8
Sabra09G0065400 Salix brachista HOM05D000308 ORTHO05D002517 1.5e-36 157.1 111 73.9
Zm00001eb201730 Zea mays HOM05D005311 ORTHO05D006160 1.5e-36 157.1 174 54.0
BcaB04g17278 Brassica carinata HOM05D005311 ORTHO05D006160 5.5e-36 155.2 137 61.3
PGR142G3492 Punica granatum HOM05D005311 ORTHO05D006160 3.0e-34 149.4 175 52.0
arahy.Tifrunner.gnm1.ann1.YXS8EF Arachis hypogaea HOM05D005311 ORTHO05D006160 1.5e-33 147.1 146 56.2
Os11g0549900 Oryza sativa ssp. japonica HOM05D005311 ORTHO05D006160 1.1e-31 141.0 152 52.6
unitig_60.g25463 Utricularia gibba HOM05D005311 ORTHO05D006160 1.4e-31 140.6 177 48.0
Oeu025305.1 Olea europaea HOM05D005311 ORTHO05D006160 9.4e-28 127.9 112 63.4
SMO118G0105 Selaginella moellendorffii HOM05D005311 ORTHO05D006160 8.0e-27 124.8 165 43.0
Pp3c9_20640 Physcomitrium patens HOM05D005311 ORTHO05D006160 1.5e-25 120.6 162 43.8
CSS0025480 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 2.0e-25 120.2 149 53.0
CDE04G0288 Ceratophyllum demersum HOM05D005311 ORTHO05D006160 7.5e-25 118.2 89 66.3
arahy.Tifrunner.gnm1.ann1.YSC4AN Arachis hypogaea HOM05D005311 ORTHO05D006160 4.8e-24 115.5 146 45.9
Mapoly0159s0003 Marchantia polymorpha HOM05D005311 ORTHO05D006160 8.3e-24 114.8 172 38.4
TAR365G0893 Trochodendron aralioides HOM05D005311 ORTHO05D006160 8.3e-24 114.8 150 51.3
Oeu037691.1 Olea europaea HOM05D005311 ORTHO05D006160 1.8e-23 113.6 95 68.4
SGA_v2.0_scaffold225G43064 Striga asiatica HOM05D005311 ORTHO05D006160 3.1e-23 112.8 143 50.3
Haze_10287 Corylus avellana HOM05D005311 ORTHO05D006160 1.2e-22 110.9 79 73.4
Cfa004693 Carpinus fangiana HOM05D005311 ORTHO05D006160 1.0e-21 107.8 78 74.4
arahy.Tifrunner.gnm1.ann1.6ZTX4G Arachis hypogaea HOM05D005311 ORTHO05D006160 2.2e-21 106.7 148 43.2
vmacro22259 Vaccinium macrocarpon HOM05D005311 ORTHO05D006160 7.2e-20 101.7 142 47.9
AagrBONN_evm.TU.Sc2ySwM_340.346 Anthoceros agrestis HOM05D005311 ORTHO05D006160 1.6e-19 100.5 168 39.3
Dinv16067 Davidia involucrata HOM05D005311 ORTHO05D006160 1.0e-18 97.8 115 51.3
Dinv44912 Davidia involucrata HOM05D005311 ORTHO05D006160 3.4e-17 92.8 144 43.8
CDE02G0336 Ceratophyllum demersum HOM05D005311 ORTHO05D006160 3.7e-16 89.4 95 52.6
Rhsim05G0093200 Rhododendron simsii HOM05D005311 ORTHO05D006160 3.5e-14 82.8 200 36.0
HPP92_006035 Vanilla planifolia HOM05D005311 ORTHO05D006160 1.3e-13 80.9 114 50.9
arahy.Tifrunner.gnm1.ann1.TC5M0Q Arachis hypogaea HOM05D005311 ORTHO05D006160 2.5e-12 76.6 131 38.2
Cre14.g614000 Chlamydomonas reinhardtii HOM05D005311 ORTHO05D006160 5.6e-12 75.5 89 44.9
arahy.Tifrunner.gnm1.ann1.HG6PX3 Arachis hypogaea HOM05D005311 ORTHO05D006160 6.1e-11 72.0 137 35.8
CARHR113150 Cardamine hirsuta HOM05D005311 ORTHO05D006160 1.4e-10 70.9 53 62.3
CSS0010436 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 4.0e-10 69.3 38 78.9
CBR_g12748 Chara braunii HOM05D000019 ORTHO05D000048 4.4e-09 65.9 72 45.8
SEGI_31449 Sequoiadendron giganteum HOM05D005311 ORTHO05D006160 1.8e-07 60.5 115 45.2
arahy.Tifrunner.gnm1.ann1.HI4HR4 Arachis hypogaea HOM05D000211 ORTHO05D002517 7.8e-06 55.1 76 40.8


User provided reference genes

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