Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g02710 Fragaria vesca HOM05D003513 ORTHO05D004660 3.0e-118 428.7 246 100.0
FAN15G2646 Fragaria x ananassa HOM05D003513 ORTHO05D004660 1.3e-110 403.3 246 93.9
FAN24G3528 Fragaria x ananassa HOM05D003513 ORTHO05D004660 4.3e-109 398.3 246 93.9
FAN20G2897 Fragaria x ananassa HOM05D003513 ORTHO05D004660 1.6e-108 396.4 246 93.1
FAN27G0638 Fragaria x ananassa HOM05D003513 ORTHO05D004660 8.2e-108 394.0 246 92.3
RcHm_v2.0_Chr6g0247131 Rosa chinensis HOM05D003513 ORTHO05D004660 1.4e-102 376.7 246 89.8
MD05G1110900 Malus domestica HOM05D003513 ORTHO05D004660 6.8e-78 294.7 223 74.4
Prupe.8G155900 Prunus persica HOM05D003513 ORTHO05D004660 2.0e-77 293.1 213 74.2
TWI23G0398 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 8.6e-65 251.1 226 64.6
TWI14G0477 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 2.5e-64 249.6 228 62.7
MD10G1114400 Malus domestica HOM05D003513 ORTHO05D004660 6.1e-63 245.0 234 66.7
Atru.chr4.2879 Acer truncatum HOM05D003513 ORTHO05D004660 7.5e-61 238.0 222 61.7
Actinidia02426 Actinidia chinensis HOM05D003513 ORTHO05D004660 4.9e-60 235.3 212 62.7
GSVIVG01036987001 Vitis vinifera HOM05D003513 ORTHO05D004660 1.1e-59 234.2 233 62.7
CSS0016653 Camellia sinensis var. sinensis HOM05D003513 ORTHO05D004660 2.4e-59 233.0 226 60.2
Actinidia00338 Actinidia chinensis HOM05D003513 ORTHO05D004660 1.2e-58 230.7 229 59.0
Dinv17746 Davidia involucrata HOM05D003513 ORTHO05D004660 2.0e-58 229.9 218 61.9
Rhsim11G0147300 Rhododendron simsii HOM05D003513 ORTHO05D004660 1.0e-57 227.6 253 56.5
vmacro01922 Vaccinium macrocarpon HOM05D003513 ORTHO05D004660 1.3e-57 227.3 233 60.9
COL.COLO4_17824 Corchorus olitorius HOM05D003513 ORTHO05D004660 2.3e-57 226.5 218 61.0
QL11p027784 Quercus lobata HOM05D003513 ORTHO05D004660 6.6e-57 224.9 227 61.7
PGR042G0778 Punica granatum HOM05D003513 ORTHO05D004660 8.6e-57 224.6 217 60.4
CANSAT11G1387 Cannabis sativa HOM05D003513 ORTHO05D004660 1.1e-56 224.2 205 62.0
Thecc.02G033900 Theobroma cacao HOM05D003513 ORTHO05D004660 1.5e-56 223.8 225 60.0
Potri.009G082200 Populus trichocarpa HOM05D003513 ORTHO05D004660 4.3e-56 222.2 224 59.4
EL10Ac4g09206 Beta vulgaris HOM05D003513 ORTHO05D004660 5.6e-56 221.9 243 55.1
Cfa003376 Carpinus fangiana HOM05D003513 ORTHO05D004660 7.3e-56 221.5 226 61.9
ClCG02G003790 Citrullus lanatus HOM05D003513 ORTHO05D004660 7.3e-56 221.5 215 61.4
Duzib248G1448 Durio zibethinus HOM05D003513 ORTHO05D004660 2.1e-55 219.9 217 62.2
Duzib052G1139 Durio zibethinus HOM05D003513 ORTHO05D004660 3.6e-55 219.2 218 58.7
Manes.07G049900 Manihot esculenta HOM05D003513 ORTHO05D004660 8.0e-55 218.0 207 60.9
Gohir.A03G213100 Gossypium hirsutum HOM05D003513 ORTHO05D004660 1.0e-54 217.6 223 58.7
Hma1.2p1_0661F.1_g197860 Hydrangea macrophylla HOM05D003513 ORTHO05D004660 1.0e-54 217.6 213 61.0
Lalb_Chr18g0060191 Lupinus albus HOM05D003513 ORTHO05D004660 2.3e-54 216.5 271 50.6
Sabra09G0063800 Salix brachista HOM05D003513 ORTHO05D004660 3.1e-54 216.1 218 57.3
CiPaw.16G055200 Carya illinoinensis HOM05D003513 ORTHO05D004660 4.0e-54 215.7 226 61.9
CsaV3_7G001360 Cucumis sativus L. HOM05D003513 ORTHO05D004660 4.0e-54 215.7 218 58.7
MELO3C013317.2 Cucumis melo HOM05D003513 ORTHO05D004660 5.2e-54 215.3 216 60.6
Medtr2g010510 Medicago truncatula HOM05D003513 ORTHO05D004660 5.2e-54 215.3 220 58.6
TAR375G0591 Trochodendron aralioides HOM05D003513 ORTHO05D004660 3.4e-53 212.6 232 58.2
Cfa004752 Carpinus fangiana HOM05D003513 ORTHO05D004660 5.8e-53 211.8 207 63.3
Ciclev10028868m.g Citrus clementina HOM05D003513 ORTHO05D004660 1.3e-52 210.7 204 61.3
Gohir.D02G234600 Gossypium hirsutum HOM05D003513 ORTHO05D004660 1.3e-52 210.7 195 62.6
MBI18_g04900_MAGBIO Magnolia biondii HOM05D003513 ORTHO05D004660 6.4e-52 208.4 230 53.9
Lj9A339T51 Lonicera japonica HOM05D003513 ORTHO05D004660 8.3e-52 208.0 213 59.6
Gorai.005G262600 Gossypium raimondii HOM05D003513 ORTHO05D004660 1.4e-51 207.2 194 60.8
Oeu059873.1 Olea europaea HOM05D003513 ORTHO05D004660 1.4e-51 207.2 224 55.8
Oeu010478.1 Olea europaea HOM05D003513 ORTHO05D004660 3.2e-51 206.1 225 54.2
Sed0007617 Sechium edule HOM05D003513 ORTHO05D004660 3.2e-51 206.1 203 57.6
Potri.001G287900 Populus trichocarpa HOM05D003513 ORTHO05D004660 9.2e-51 204.5 223 56.1
MBI18_g12443_MAGBIO Magnolia biondii HOM05D003513 ORTHO05D004660 2.0e-50 203.4 233 53.6
Eucgr.I02512 Eucalyptus grandis HOM05D003513 ORTHO05D004660 6.0e-50 201.8 206 59.2
Cc02_g20350 Coffea canephora HOM05D003513 ORTHO05D004660 1.1e-48 197.6 226 55.8
Psat1g212080 Pisum sativum HOM05D003513 ORTHO05D004660 1.9e-48 196.8 189 61.9
Lj6g0027000 Lotus japonicus HOM05D003513 ORTHO05D004660 4.3e-48 195.7 247 49.8
arahy.Tifrunner.gnm1.ann1.K4QFJX Arachis hypogaea HOM05D003513 ORTHO05D004660 5.6e-48 195.3 260 49.2
arahy.Tifrunner.gnm1.ann1.2E8PRH Arachis hypogaea HOM05D003513 ORTHO05D004660 7.3e-48 194.9 259 50.2
Glyma.15G062000 Glycine max HOM05D003513 ORTHO05D004660 1.6e-47 193.7 254 50.0
Ca_00197_v3 Cicer arietinum L. HOM05D000871 ORTHO05D000770 2.8e-47 193.0 202 55.9
arahy.Tifrunner.gnm1.ann1.SQB86K Arachis hypogaea HOM05D003513 ORTHO05D004660 8.1e-47 191.4 260 48.8
PSO339G4304 Papaver somniferum HOM05D003513 ORTHO05D004660 8.1e-47 191.4 206 56.8
CiPaw.05G024600 Carya illinoinensis HOM05D003513 ORTHO05D004660 2.3e-46 189.9 226 57.5
Glyma.13G253000 Glycine max HOM05D003513 ORTHO05D004660 2.3e-46 189.9 265 49.1
Nn4g22684 Nelumbo nucifera HOM05D003513 ORTHO05D004660 2.3e-46 189.9 170 62.4
THA.LOC104807196 Tarenaya hassleriana HOM05D003513 ORTHO05D004660 3.1e-46 189.5 172 62.2
MSTRG.8970 Avicennia marina HOM05D003513 ORTHO05D004660 6.8e-46 188.3 227 52.4
MSTRG.8971 Avicennia marina HOM05D003513 ORTHO05D004660 6.8e-46 188.3 227 52.4
PSO384G0236 Papaver somniferum HOM05D003513 ORTHO05D004660 6.8e-46 188.3 243 50.6
Dinv03362 Davidia involucrata HOM05D003513 ORTHO05D004660 2.0e-45 186.8 149 69.1
SalBow6G6243 Salvia bowleyana HOM05D003513 ORTHO05D004660 2.0e-45 186.8 201 55.2
Sp3g05980 Schrenkiella parvula HOM05D003513 ORTHO05D004660 5.8e-45 185.3 220 49.5
Sopen01g048910 Solanum pennellii HOM05D003513 ORTHO05D004660 5.8e-45 185.3 227 52.0
VMungo0540G2261 Vigna mungo HOM05D003513 ORTHO05D004660 5.8e-45 185.3 245 47.8
Atru.chr5.2163 Acer truncatum HOM05D003513 ORTHO05D004660 1.3e-44 184.1 148 67.6
SHI04900 Sapria himalayana HOM05D003513 ORTHO05D004660 2.2e-44 183.3 217 52.5
SGA_v2.0_scaffold32G12967 Striga asiatica HOM05D003513 ORTHO05D004660 2.9e-44 183.0 210 53.3
Aa31LG8G12720 Aethionema arabicum HOM05D003513 ORTHO05D004660 3.7e-44 182.6 221 52.9
Lsat_1_v5_gn_7_84220 Lactuca sativa HOM05D003513 ORTHO05D004660 6.4e-44 181.8 227 50.7
Solyc01g106560.4 Solanum lycopersicum HOM05D003513 ORTHO05D004660 1.1e-43 181.0 227 50.2
arahy.Tifrunner.gnm1.ann1.C4ZNB5 Arachis hypogaea HOM05D003513 ORTHO05D004660 1.4e-43 180.6 264 48.5
Aqoxy5G03939 Aquilegia oxysepala HOM05D003513 ORTHO05D004660 2.4e-43 179.9 238 49.6
Lj6g0027758 Lotus japonicus HOM05D003513 ORTHO05D004660 2.4e-43 179.9 278 44.2
Peaxi162Scf00016g03328 Petunia axillaris HOM05D003513 ORTHO05D004660 7.1e-43 178.3 203 53.7
PGSC0003DMG400005104 Solanum tuberosum HOM05D003513 ORTHO05D004660 1.2e-42 177.6 229 49.3
ECA236G2279 Erigeron canadensis HOM05D003513 ORTHO05D004660 1.6e-42 177.2 214 53.7
unitig_0.g631 Utricularia gibba HOM05D003513 ORTHO05D004660 2.1e-42 176.8 206 53.9
Lj1g0004946 Lotus japonicus HOM05D003513 ORTHO05D004660 3.5e-42 176.0 221 51.1
Sabra16G0180200 Salix brachista HOM05D003513 ORTHO05D004660 7.8e-42 174.9 251 48.6
DCAR_029853 Daucus carota HOM05D003513 ORTHO05D004660 1.1e-40 171.0 240 47.1
AL3G45960 Arabidopsis lyrata HOM05D003513 ORTHO05D004660 1.9e-40 170.2 227 48.0
Os07g0213400 Oryza sativa ssp. japonica HOM05D003513 ORTHO05D004660 4.3e-40 169.1 204 51.5
Carub.0003s2847 Capsella rubella HOM05D003513 ORTHO05D004660 5.6e-40 168.7 223 48.9
AL7G17790 Arabidopsis lyrata HOM05D003513 ORTHO05D004660 7.3e-40 168.3 172 58.7
Zm00001eb325060 Zea mays HOM05D003513 ORTHO05D004660 1.6e-39 167.2 200 51.0
AUR62005013 Chenopodium quinoa HOM05D003513 ORTHO05D004660 2.6e-37 159.8 208 50.0
Sp7g31420 Schrenkiella parvula HOM05D003513 ORTHO05D004660 2.6e-37 159.8 206 50.5
Cpa.g.sc20.72 Carica papaya HOM05D003513 ORTHO05D004660 3.4e-37 159.5 149 59.1
C03p42610 Brassica napus HOM05D003513 ORTHO05D004660 7.6e-37 158.3 222 45.0
CDE04G2077 Ceratophyllum demersum HOM05D000016 ORTHO05D000538 2.2e-36 156.8 194 49.0
HPP92_011751 Vanilla planifolia HOM05D003513 ORTHO05D004660 3.8e-36 156.0 238 45.8
BcaC09g52179 Brassica carinata HOM05D003513 ORTHO05D004660 1.1e-35 154.5 172 53.5
C01p05020 Brassica napus HOM05D003513 ORTHO05D004660 1.1e-35 154.5 171 53.8
BolC1t00484H Brassica oleracea HOM05D003513 ORTHO05D004660 1.1e-35 154.5 172 53.5
BraA01t00446Z Brassica rapa HOM05D003513 ORTHO05D004660 1.9e-35 153.7 172 54.1
BcaB07g32937 Brassica carinata HOM05D003513 ORTHO05D004660 7.1e-35 151.8 190 50.5
ATR0681G195 Amborella trichopoda HOM05D003513 ORTHO05D004660 1.2e-34 151.0 253 40.7
AT4G33690 Arabidopsis thaliana HOM05D003513 ORTHO05D004660 2.1e-34 150.2 173 53.2
A03p35030 Brassica napus HOM05D003513 ORTHO05D004660 6.0e-34 148.7 223 43.5
A01p04630 Brassica napus HOM05D003513 ORTHO05D004660 3.0e-33 146.4 223 44.8
BraA03t12683Z Brassica rapa HOM05D003513 ORTHO05D004660 3.0e-33 146.4 223 43.9
HanXRQChr17g0550541 Helianthus annuus HOM05D003513 ORTHO05D004660 3.9e-33 146.0 201 49.3
CDE07G1727 Ceratophyllum demersum HOM05D003513 ORTHO05D004660 5.1e-33 145.6 255 40.8
AUR62000955 Chenopodium quinoa HOM05D003513 ORTHO05D004660 1.9e-32 143.7 208 44.7
BolC3t16531H Brassica oleracea HOM05D003513 ORTHO05D004660 4.3e-32 142.5 224 43.3
SEGI_16177 Sequoiadendron giganteum HOM05D003513 ORTHO05D004660 7.3e-32 141.7 266 38.7
Mapoly0037s0029 Marchantia polymorpha HOM05D003513 ORTHO05D004660 1.1e-30 137.9 226 40.7
Nitab4.5_0001477g0150 Nicotiana tabacum HOM05D003513 ORTHO05D004660 3.1e-30 136.3 227 44.1
HPP92_025257 Vanilla planifolia HOM05D003513 ORTHO05D004660 4.0e-30 136.0 173 45.7
SMO119G0189 Selaginella moellendorffii HOM05D003513 ORTHO05D004660 1.2e-29 134.4 200 43.0
Carub.0007s0673 Capsella rubella HOM05D003513 ORTHO05D004660 5.8e-29 132.1 153 53.6
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 9.9e-29 131.3 195 46.7
Hund24144 Selenicereus undatus HOM05D003513 ORTHO05D004660 9.9e-29 131.3 157 51.6
Sc21g0000900 Simmondsia chinensis HOM05D003513 ORTHO05D004660 3.8e-28 129.4 169 47.3
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 1.4e-27 127.5 174 48.3
SEGI_38183 Sequoiadendron giganteum HOM05D003513 ORTHO05D004660 4.6e-26 122.5 226 40.3
Pp3c17_21630 Physcomitrium patens HOM05D003513 ORTHO05D004660 6.0e-26 122.1 231 38.1
AagrBONN_evm.TU.Sc2ySwM_289.2 Anthoceros agrestis HOM05D003513 ORTHO05D004660 1.3e-25 120.9 256 37.1
AagrBONN_evm.TU.Sc2ySwM_362.2667 Anthoceros agrestis HOM05D003513 ORTHO05D004660 1.3e-25 120.9 256 37.1
BcaB04g17698 Brassica carinata HOM05D003513 ORTHO05D004660 1.3e-23 114.4 202 42.6
Nitab4.5_0007763g0010 Nicotiana tabacum HOM05D003513 ORTHO05D004660 1.3e-23 114.4 171 45.6
A05p21550 Brassica napus HOM05D003513 ORTHO05D004660 6.2e-23 112.1 197 41.6
BraA05t21075Z Brassica rapa HOM05D003513 ORTHO05D004660 6.2e-23 112.1 197 41.6
Eucgr.L02047 Eucalyptus grandis HOM05D003513 ORTHO05D004660 1.4e-22 110.9 141 50.4
TAR629G2534 Trochodendron aralioides HOM05D003513 ORTHO05D004660 6.9e-22 108.6 116 56.9
CAN.G192.6 Capsicum annuum HOM05D003513 ORTHO05D004660 4.5e-21 105.9 183 43.7
Glyma.07G229300 Glycine max HOM05D003513 ORTHO05D004660 7.6e-21 105.1 73 71.2
A09p29610 Brassica napus HOM05D003513 ORTHO05D004660 2.2e-20 103.6 191 44.0
BcaB02g10961 Brassica carinata HOM05D003513 ORTHO05D004660 6.4e-20 102.1 86 62.8
A04p04130 Brassica napus HOM05D003513 ORTHO05D004660 8.4e-20 101.7 186 40.3
BcaC08g44431 Brassica carinata HOM05D003513 ORTHO05D013524 4.2e-19 99.4 195 39.5
TPR.G22787 Trifolium pratense HOM05D003513 ORTHO05D004660 1.2e-18 97.8 127 48.0
Migut.B00497 Erythranthe guttata HOM05D003513 ORTHO05D004660 6.0e-18 95.5 161 42.2
BraA03t15374Z Brassica rapa HOM05D003513 ORTHO05D004660 1.8e-17 94.0 186 38.2
CARHR105270 Cardamine hirsuta HOM05D003513 ORTHO05D004660 3.3e-16 89.7 171 42.1
A08p11320 Brassica napus HOM05D003513 ORTHO05D004660 9.6e-16 88.2 63 68.3
A10p16400 Brassica napus HOM05D003513 ORTHO05D004660 9.6e-16 88.2 63 68.3
C06p15560 Brassica napus HOM05D003513 ORTHO05D004660 9.6e-16 88.2 63 68.3
C08p23080 Brassica napus HOM05D003513 ORTHO05D004660 9.6e-16 88.2 63 68.3
Thhalv10021452m.g Eutrema salsugineum HOM05D003513 ORTHO05D004660 1.6e-15 87.4 156 37.8
Zm00001eb303370 Zea mays HOM05D003513 ORTHO05D004660 2.8e-15 86.7 161 40.4
A03p66860 Brassica napus HOM05D003513 ORTHO05D004660 3.6e-15 86.3 60 70.0
A09p33590 Brassica napus HOM05D003513 ORTHO05D004660 4.8e-15 85.9 56 75.0
C06p18710 Brassica napus HOM05D003513 ORTHO05D004660 4.8e-15 85.9 58 70.7
A03p61430 Brassica napus HOM05D003513 ORTHO05D004660 6.2e-15 85.5 56 75.0
BraA09t38150Z Brassica rapa HOM05D003513 ORTHO05D004660 1.4e-14 84.3 56 73.2
Phvul.006G197800 Phaseolus vulgaris HOM05D003513 ORTHO05D004660 2.4e-14 83.6 168 37.5
BolC8t52234H Brassica oleracea HOM05D003513 ORTHO05D004660 5.8e-13 79.0 187 36.9
TWI59G0638 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 2.2e-12 77.0 94 46.8
C01p31670 Brassica napus HOM05D003513 ORTHO05D015800 4.9e-12 75.9 54 68.5
C08p46960 Brassica napus HOM05D003513 ORTHO05D013524 6.4e-12 75.5 187 36.4
Gohir.A01G179633 Gossypium hirsutum HOM05D003513 ORTHO05D004660 1.9e-11 73.9 51 68.6
A05p23280 Brassica napus HOM05D003513 ORTHO05D004660 4.2e-11 72.8 46 76.1
BraA05t21192Z Brassica rapa HOM05D003513 ORTHO05D004660 4.2e-11 72.8 46 76.1
MCO09G316 Micromonas commoda HOM05D003513 ORTHO05D004660 2.7e-10 70.1 190 31.1
Gorai.002G212100 Gossypium raimondii HOM05D003513 ORTHO05D004660 4.6e-10 69.3 51 66.7
TAR636G1841 Trochodendron aralioides HOM05D003513 ORTHO05D004660 2.3e-09 67.0 88 50.0
BcaB05g23799 Brassica carinata HOM05D003513 ORTHO05D004660 1.9e-08 63.9 134 38.8
Gohir.A10G119000 Gossypium hirsutum HOM05D001046 ORTHO05D005883 1.3e-07 61.2 76 51.3
BolC1t03102H Brassica oleracea HOM05D003531 ORTHO05D015800 1.1e-06 58.2 36 77.8
CBR_g21766 Chara braunii HOM05D003513 ORTHO05D004660 1.4e-06 57.8 133 34.6
BcaC06g33105 Brassica carinata HOM05D005554 ORTHO05D021652 2.4e-06 57.0 63 50.8
C09p21920 Brassica napus HOM05D001670 ORTHO05D015800 3.1e-06 56.6 46 58.7


User provided reference genes

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